Commit graph

109300 commits

Author SHA1 Message Date
Simon Tournier
9202c56e84
gnu: r-oligo: Update to 1.62.2.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.2.
2023-02-24 08:02:21 +01:00
Simon Tournier
144c07fd4a
gnu: r-variantannotation: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.44.1.
2023-02-24 08:02:21 +01:00
Simon Tournier
962278a621
gnu: r-stringdb: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.10.1.
2023-02-24 08:02:21 +01:00
Simon Tournier
9682fd19bf
gnu: r-limma: Update to 3.54.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.1.
2023-02-24 08:02:21 +01:00
Simon Tournier
8fb4758b12
gnu: r-impute: Update to 1.72.3.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.3.
2023-02-24 08:01:02 +01:00
Simon Tournier
705d024b14
gnu: r-genomicfeatures: Update to 1.50.4.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.4.
2023-02-24 08:01:02 +01:00
Simon Tournier
5b0984393c
gnu: r-genomeinfodb: Update to 1.34.9.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.9.
2023-02-24 08:01:02 +01:00
Simon Tournier
4fd6ea684a
gnu: r-genefilter: Update to 1.80.3.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.3.
2023-02-24 08:01:02 +01:00
Simon Tournier
b38475bef4
gnu: r-edger: Update to 3.40.2.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.2.
2023-02-24 08:01:02 +01:00
Simon Tournier
3ffaed5044
gnu: r-deseq2: Update to 1.38.3.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.3.
2023-02-24 08:01:02 +01:00
Simon Tournier
d2598f57fb
gnu: r-bsgenome: Update to 1.66.3.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.3.
2023-02-24 08:01:02 +01:00
Simon Tournier
3f2a917993
gnu: r-annotationforge: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.1.
2023-02-24 08:01:02 +01:00
Simon Tournier
dd2c4cafdf
gnu: r-cytolib: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.10.1.
[propagated-inputs]: Remove r-rcpp, r-rcpparmadillo and r-rcppparallel.
2023-02-24 08:00:58 +01:00
Tobias Geerinckx-Rice
5d10644371
git: Make better use of the better progress bar.
Commit 189525412e introduced
‘high-resolution’ Unicode progress bars, but these require more granular
calls to reach their full potential.

* guix/git.scm (show-progress): Derive the number of PROGRESS-BAR
updates from its maximum resolution, rather than hard-coding 100.
2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice
98e2a15b1e
git: Factor out INDEXER-PROGRESS-TOTAL-OBJECTS access.
* guix/git.scm (show-progress): Reuse the result of the first call.
2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice
9aa750776a
ssh: Factor out progress % calculation.
* guix/ssh.scm (notify-transfer-progress): Trust its % argument.
2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice
af80906345
gnu: bees: Drop ‘dedupe’ slang.
* gnu/packages/file-systems.scm (bees)[synopsis, description]: Write out
‘deduplication’ in full.  Expand @acronym in description rather than
synopsis.  Drop filler words.
2023-02-19 01:00:06 +01:00
Morgan Smith
4f08551a83
gnu: bees: Update to 0.9.2.
* gnu/packages/file-systems.scm (bees): Update to 0.9.2.
[license]: Add two individual licences.
* gnu/packages/patches/bees-beesd-honor-destdir-on-installation.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice
1eea158ee5
gnu: homebank: Update to 5.6.2.
* gnu/packages/finance.scm (homebank): Update to 5.6.2.
2023-02-19 01:00:02 +01:00
Tobias Geerinckx-Rice
c32f9912e6
gnu: xvfb-run: Update to 21.1.7-1.
* gnu/packages/xorg.scm (xvfb-run): Update to 21.1.7-1.
2023-02-19 01:00:01 +01:00
Tobias Geerinckx-Rice
e701f67246
gnu: linux-libre: Consistently provide the drop_monitor module.
This is needed by, e.g., <https://github.com/nhorman/dropwatch>.
Build it as a module everywhere for consistency.

* gnu/packages/aux-files/linux-libre/4.14-i686.conf:
Set CONFIG_NET_DROP_MONITOR=m.
* gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Likewise.
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.10-arm.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.10-arm64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.10-i686.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.10-x86_64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.15-arm.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.15-arm64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.15-i686.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.15-x86_64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.4-arm.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.4-arm64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.4-i686.conf: Likewise.
* gnu/packages/aux-files/linux-libre/5.4-x86_64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/6.1-arm.conf: Likewise.
* gnu/packages/aux-files/linux-libre/6.1-arm64.conf: Likewise.
* gnu/packages/aux-files/linux-libre/6.1-i686.conf: Likewise.
* gnu/packages/aux-files/linux-libre/6.1-x86_64.conf: Likewise.

Reported by mirai in #guix.
2023-02-19 01:00:01 +01:00
Tobias Geerinckx-Rice
00d855ae3a
gnu: epson-inkjet-printer-escpr: Update to 1.7.24.
* gnu/packages/cups.scm (epson-inkjet-printer-escpr): Update to 1.7.24.
2023-02-19 01:00:01 +01:00
Tobias Geerinckx-Rice
1e6ddceb83
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-19 01:00:01 +01:00
André Batista
c756c62cfd
doc: Explain how to use local guix repositories.
* doc/guix.texi (Using a Custom Guix Channel): Add note and example
on how to exempt a local guix repository from git ownership checks.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-02-23 16:35:15 -05:00
Vivien Kraus
3809aa01a1
gnu: gnulib: Allow only one directory name in GNULIB_SRCDIR.
* gnu/packages/build-tools.scm (gnulib-checkout) [search-path-specification
GNULIB_SRCDIR]: Set separator to #f.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:37 +01:00
Yovan Naumovski
84c9a94b45
gnu: Add aspell-dict-bg.
* gnu/packages/aspell.scm (aspell-dict-bg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:37 +01:00
Andy Tai
437e858e6c
gnu: lightning: Update to 2.2.1
* gnu/packages/assembly.scm (lightning): Update to 2.2.1

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:37 +01:00
Ludovic Courtès
810788b550
doc: Further clarify documentation of 'host' and 'hosts-service-type'.
* doc/guix.texi (Base Services): Use docstring of 'host' to document
it and remove @deftp.  Introduce example.  Fix typos in file name.
2023-02-23 16:31:36 +01:00
Ludovic Courtès
35e64a8793
services: hosts: Do not export '%host'.
This was not meant to be exported.

* gnu/services/base.scm (%host): Do not export.
* doc/guix.texi (Base Services): Remove mention.
2023-02-23 16:31:36 +01:00
Bruno Victal
4372abfb0f
doc: hosts-service-type: Improve documentation.
* doc/guix.texi (Base Services): Improve hosts-service-type documentation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:36 +01:00
Bruno Victal
c742615b76
system: Do not export local-host-entries.
Unlike the deprecated 'local-host-aliases', there's no use for
local-host-entries since it's used to set the default value for
hosts-service-type. Given that this service-type is expected to be
extended, one presumes that when they explicitly override the service
default value they do not have much interest in the 'local-host-entries'
procedure.

* gnu/system.scm: Do not export local-host-entries.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:36 +01:00
Bruno Victal
ce02b23bb9
doc: hosts-service-type: Relocate to Base Services.
hosts-service-type is under (gnu services base)

* doc/guix.texi: Merge duplicated copyright lines.
(Service Reference): Move hosts-service-type to ...
(Base Services): ... here.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-02-23 16:31:36 +01:00
Ludovic Courtès
f45fc72c28
gnu: openmpi: Use gexps.
* gnu/packages/mpi.scm (openmpi)[arguments]: Use gexps.
2023-02-23 16:31:36 +01:00
Ludovic Courtès
b8d3b9d14b
gnu: psm2: Use gexps.
* gnu/packages/linux.scm (psm2)[arguments]: Use gexps.
2023-02-23 16:31:36 +01:00
Ludovic Courtès
96c335574d
gnu: ibutils: Fix compilation.
* gnu/packages/fabric-management.scm (ibutils)[arguments]: Add CFLAGS
to #:configure-flags.
2023-02-23 16:31:35 +01:00
Ludovic Courtès
f30946ce13
gnu: ibutils: Use gexps.
* gnu/packages/fabric-management.scm (ibutils)[arguments]: Use gexps.
2023-02-23 16:31:35 +01:00
Ludovic Courtès
73c738bc9e
gnu: infiniband-diags: Use gexps.
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Use
gexps.  Replace reference to '%outputs' with references to #:outputs.
2023-02-23 16:31:35 +01:00
Ludovic Courtès
9b3cc02acb
gnu: ucx: Use gexps.
* gnu/packages/fabric-management.scm (ucx): Use gexps.
2023-02-23 16:31:35 +01:00
Ludovic Courtès
b126eae021
gnu: ucx: Mark POWER9 as supported.
* gnu/packages/fabric-management.scm (ucx)[supported-systems]: Add
"powerpc64le-linux".
2023-02-23 16:31:35 +01:00
Nicolas Goaziou
92984eb93f
Revert "gnu: texlive-latex-fancyvrb: Add needed propagated-inputs."
This reverts commit 7a01586afe, which causes too
many rebuilds.
2023-02-23 16:20:12 +01:00
Vagrant Cascadian
8b654bf159
gnu: Add staticsite.
* gnu/packages/python-xyz.scm (staticsite): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:43 +01:00
Simon Streit
be1d2fb2f7
gnu: Add x11-ssh-askpass.
* gnu/packages/ssh.scm (x11-ssh-askpass): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:43 +01:00
Simon Streit
a694ef4802
gnu: mpdris2: Remove input labels and add inputs.
* gnu/packages/mpd.scm (mpdris2)[arguments]: Use G-expressions.  Remove
trailing #T from phase.
[inputs]: Remove labels.  Add BASH-MINIMAL and
PYTHON-MUTAGEN.
[native-inputs]: Remove labels.
[description]: Use complete sentence.
2023-02-23 15:25:43 +01:00
conses
415db66877
gnu: Add emacs-ob-go.
* gnu/packages/emacs-xyz.scm (emacs-ob-go): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:42 +01:00
conses
0dd6b56da5
gnu: Add emacs-org-recur.
* gnu/packages/emacs-xyz.scm (emacs-org-recur): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:42 +01:00
conses
f629053a84
gnu: Add emacs-calc-currency.
* gnu/packages/emacs-xyz.scm (emacs-calc-currency): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:42 +01:00
Demis Balbach
8596f4d3b4
gnu: Add emacs-jsdoc.
* gnu/packages/emacs-xyz.scm (emacs-jsdoc): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:41 +01:00
Morgan Smith
adc0e3b485
gnu: Add texlive-minted.
* gnu/packages/tex.scm (texlive-minted): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:41 +01:00
Morgan Smith
08e46c3001
gnu: Add texlive-fvextra.
* gnu/packages/tex.scm (texlive-fvextra): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:40 +01:00
Morgan Smith
7a01586afe
gnu: texlive-latex-fancyvrb: Add needed propagated-inputs.
* gnu/packages/tex.scm (texlive-latex-fancyvrb)[propagated-inputs]: Add
TEXLIVE-LATEX-UPQUOTE.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-23 15:25:40 +01:00