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Author SHA1 Message Date
Mark H Weaver
6a703976f4
gnu: libotf: Fix source URI. 
* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI.
 2016-10-02 10:49:22 -04:00
Ben Woodcroft
4bdc3df92d
gnu: vsearch: Update to 2.1.2. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2.
 2016-10-02 22:25:39 +10:00
Efraim Flashner
10bc741619
gnu: ffmpeg: Update to 3.1.4. 
* gnu/packages/video.scm (ffmpeg): Update to 3.1.4.
 2016-10-02 11:38:32 +03:00
Mark H Weaver
79992a3e6f
gnu: linux-libre: Update to 4.7.6. 
* gnu/packages/linux.scm (linux-libre): Update to 4.7.6.
 2016-10-01 18:22:43 -04:00
Mark H Weaver
2bfa61c034
gnu: linux-libre@4.4: Update to 4.4.23. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.
 2016-10-01 18:20:28 -04:00
Ricardo Wurmus
09a86196e9
gnu: guitarix: Update to 0.35.1. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.1.
 2016-10-01 22:31:10 +02:00
Ricardo Wurmus
89fa2219a7
gnu: eigen: Update to 3.2.9. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.9.
 2016-10-01 21:36:36 +02:00
Ricardo Wurmus
d70f5139da
gnu: julia: Update to 0.5.0. 
* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".
 2016-10-01 21:36:36 +02:00
Ricardo Wurmus
9b72ce60fb
gnu: utf8proc: Update to 2.0.2. 
* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.
 2016-10-01 21:36:35 +02:00
Leo Famulari
917de2511b
gnu: gd: Fix CVE-2016-7568. 
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-10-01 12:27:37 -04:00
John Darrington
43f7af428e
gnu: rpcbind-configuration: Rename pkg to nfs-utils 
* gnu/services/nfs.scm (<rpcbind-configuration>): "pkg" --> "nfs-utils"
 2016-10-01 09:26:07 +02:00
Ivan Vilata i Balaguer
37356e0bf8
gnu: Add quickswitch-i3. 
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-01 10:56:11 +08:00
Ivan Vilata i Balaguer
c165591d47
gnu: Add python-i3-py. 
* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-01 10:44:44 +08:00
ng0
f1b61e26ae
gnu: Add emacs-rudel. 
* gnu/packages/emacs.scm (emacs-rudel): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-01 10:22:31 +08:00
宋文武
df0e8a239b
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'. 
* gnu/packages/password-utils.scm (shroud)[arguments]: New field.
 2016-10-01 08:50:48 +08:00
Leo Famulari
ebb9b9a60c
gnu: tmux: Update to 2.3. 
* gnu/packages/tmux.scm (tmux): Update to 2.3.
 2016-09-30 19:49:08 -04:00
Leo Famulari
bddf22b99e
gnu: libreoffice: Update to 5.1.5.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
 2016-09-30 01:17:24 -04:00
Danny Milosavljevic
cfb7e269e9
gnu: xonsh: Remove bundled PLY. 
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-29 17:13:05 -04:00
Julien Lepiller
86d8f6d3ef
services: Add 'openssh-service'. 
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-29 23:11:48 +02:00
Arun Isaac
01c5c21a67
gnu: emacs: Build with m17n support. 
* gnu/packages/emacs.scm (emacs): Build with m17n support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-29 17:54:33 +02:00
Arun Isaac
a80b60f484
gnu: Add m17n-lib. 
* gnu/packages/emacs.scm (m17n-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-29 17:54:33 +02:00
Arun Isaac
154c71e003
gnu: Add m17n-db. 
* gnu/packages/emacs.scm (m17n-db): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-29 17:54:32 +02:00
Leo Famulari
0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180]. 
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
 2016-09-29 11:18:52 -04:00
David Craven
b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options." 
Options aren't redundant and are required for building the initrd.

This reverts commit 50dbc03647.
 2016-09-29 12:59:37 +02:00
Ludovic Courtès
d06ce0466f
gnu: dbus-c++: License has "or later" clause. 
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
 2016-09-29 09:01:22 +02:00
Ricardo Wurmus
2320e76b82
gnu: sra-tools: Fix build on i686. 
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
 2016-09-28 22:30:41 +02:00
Efraim Flashner
37042a0fb4
gnu: tilda: Update to 1.3.3. 
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
 2016-09-28 21:38:38 +03:00
Stefan Reichoer
1d51585573
gnu: Add xonsh. 
* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-28 13:42:06 -04:00
Leo Famulari
b2fe918302
gnu: attic: Superseded by borg. 
* gnu/packages/backup.scm (attic)[properties]: New field.
 2016-09-28 13:07:06 -04:00
Taylan Ulrich Bayırlı/Kammer
415ee287fa
gnu: nestopia-ue: Update to version 1.47. 2016-09-28 17:00:35 +02:00
Taylan Ulrich Bayırlı/Kammer
dac65f90b6
gnu: higan: Update to version 101. 
* gnu/packages/games.scm (higan): Update to version 101.
 2016-09-28 17:00:12 +02:00
Thomas Danckaert
b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'. 
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-09-28 21:23:47 +08:00
David Craven
7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant. 
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
 2016-09-28 12:40:12 +02:00
David Craven
e4e9c0a083
gnu: make-linux-libre: Install device tree files. 
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
 2016-09-28 12:40:12 +02:00
David Craven
50dbc03647
gnu: %default-extra-linux-options: Remove redundant options. 
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
  redundant options.
 2016-09-28 12:40:12 +02:00
David Craven
33619c3ae0
gnu: Add sdcc. 
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-09-28 12:40:12 +02:00
David Craven
a3af70aca8
gnu: Add picocom. 
* gnu/packages/terminals.scm (picocom): New variable.
 2016-09-28 12:40:12 +02:00
Lukas Gradl
615c999055
gnu: opendht: Propagate msgpack. 
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:45:02 +02:00
Lukas Gradl
974aaf71e5
gnu: telephony: Add 'license:' prefix. 
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:25:34 +02:00
Lukas Gradl
9a4c032cc4
gnu: Add gsm. 
* gnu/packages/audio.scm (gsm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:14:42 +02:00
Lukas Gradl
89eb7581a4
gnu: Add dbus-c++. 
* gnu/packages/glib.scm (dbus-c++): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:08:33 +02:00
Leo Famulari
a7c9b062ad
gnu: libressl: Update to 2.5.0. 
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
 2016-09-27 20:40:39 -04:00
Tobias Geerinckx-Rice
ffabdc185c
gnu: encfs: Update to 1.9.1. 
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
 2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice
9da3c49837
gnu: btrfs-progs: Update to 4.7.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
 2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice
8c120e4f3b
gnu: zip: Use 'modify-phases'. 
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
 2016-09-28 00:20:30 +02:00
Leo Famulari
8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776]. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
 2016-09-27 15:19:14 -04:00
Leo Famulari
cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776]. 
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
 2016-09-27 15:19:14 -04:00
Stefan Reichoer
e8c9b01090
gnu: Add python-q. 
* gnu/packages/python.scm (python-q, python2-q): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 14:54:58 -04:00
Leo Famulari
b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718. 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:49:49 -04:00
Thomas Danckaert
32f70e1f86
gnu: Add gctp. 
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:37:46 -04:00
ng0
3973e137f0
gnu: Add gloox. 
* gnu/packages/messaging.scm (gloox): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:31:18 -04:00
ng0
419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf. 
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 12:29:35 -04:00
Andy Wingo
e9070933bf
gnu: Add gobby. 
* gnu/packages/gobby.scm (gobby): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
22a3cff3c8
gnu: Add obby. 
* gnu/packages/gobby.scm (obby): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
c8105e811b
gnu: Add libnet6. 
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
 2016-09-27 14:46:10 +02:00
Andy Wingo
b61d962723
gnu: Add libxml++-2. 
* gnu/packages/gnome.scm (libxml++-2): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
66329c23a1
gnu: New default Dovecot service postmaster_address 
* gnu/services/mail.scm (dovecot-configuration): Change default for
  postmaster-address, as dovecot is now requiring a non-empty value and
  will fail to start up otherwise.
* doc/guix.texi (Mail Services): Update.
 2016-09-27 14:45:07 +02:00
Efraim Flashner
a777535cd7
gnu: aria2: Update to 1.27.1. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
 2016-09-27 14:52:48 +03:00
Ben J Woodcroft
99caa6f75f
gnu: python-plastid: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
 2016-09-27 20:07:12 +10:00
Ben J Woodcroft
67f66812f5
gnu: Add python-termcolor. 
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
 2016-09-27 20:07:02 +10:00
Marius Bakke
f536dce522
gnu: python-pysam: Enable tests. 
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
 2016-09-27 20:06:00 +10:00
Marius Bakke
dff26b2363
gnu: python-pysam: Delete bundled htslib. 
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
 2016-09-27 20:06:00 +10:00
Marius Bakke
397d463a12
gnu: python-pysam: Use 'modify-phases'. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
 2016-09-27 20:06:00 +10:00
Marius Bakke
bdc7be59eb
gnu: Add bcftools. 
* gnu/packages/bioinformatics.scm (bcftools): New variable.
 2016-09-27 20:06:00 +10:00
Marius Bakke
e301bfc886
gnu: python2-pbcore: Update to 1.2.10. 
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
 2016-09-27 20:06:00 +10:00
Marius Bakke
c2efe1aea8
gnu: Add python-pyxb. 
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
 2016-09-27 20:06:00 +10:00
Marius Bakke
fd49eb213f
gnu: python-pysam: Update to 0.9.1.4. 
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
 2016-09-27 20:05:57 +10:00
Ludovic Courtès
3c185b24f5
Add missing exports. 
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.

* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
 2016-09-27 11:22:56 +02:00
Leo Famulari
9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
 2016-09-26 17:09:08 -04:00
Leo Famulari
8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052]. 
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
 2016-09-26 17:09:05 -04:00
Danny Milosavljevic
58478cc1cb
gnu: libftdi: Propagate the libusb input. 
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-26 14:30:37 -04:00
Ricardo Wurmus
675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
 2016-09-26 14:30:59 +02:00
Ricardo Wurmus
bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2. 
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
 2016-09-26 14:30:59 +02:00
Ricardo Wurmus
5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5. 
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1. 
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3. 
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1. 
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
1da48e4302
gnu: ghc-tagsoup: Update to 0.14. 
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
1a545a1e7c
gnu: tbb: Fail on test errors. 
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
ba4529c4f7
gnu: ghc-tls: Update to 1.3.8. 
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
 2016-09-26 14:30:57 +02:00
Ricardo Wurmus
7f5ca399bf
gnu: tbb: Use modify-phases syntax. 
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
 2016-09-26 14:30:57 +02:00
Ben Woodcroft
af8de20386
gnu: vsearch: Update to 2.1.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
 2016-09-26 20:35:32 +10:00
Ricardo Wurmus
204adc3017
gnu: azr3: Fix libsigc++ build errors. 
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-26 10:47:58 +02:00
Ricardo Wurmus
3ef08dceb3
gnu: qtractor: Update to 0.7.9. 
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
 2016-09-26 08:16:13 +02:00
Ricardo Wurmus
f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene. 
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
 2016-09-26 07:47:55 +02:00
Ricardo Wurmus
684f29bd2e
gnu: Add r-grohmm. 
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
 2016-09-26 07:47:55 +02:00
Ricardo Wurmus
7f903d7300
gnu: Add r-systempiper. 
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
 2016-09-26 07:47:55 +02:00
Ricardo Wurmus
cb99d457f0
gnu: Add r-shortread. 
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
 2016-09-26 07:47:54 +02:00
Ricardo Wurmus
89f40c5e4e
gnu: Add r-gostats. 
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
 2016-09-26 07:47:54 +02:00
Ricardo Wurmus
1a1931f7e0
gnu: Add r-category. 
* gnu/packages/bioinformatics.scm (r-category): New variable.
 2016-09-26 07:47:54 +02:00
Ricardo Wurmus
ad740ff818
gnu: Add r-gseabase. 
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
 2016-09-26 07:47:53 +02:00
Ricardo Wurmus
cd9e7dc7ff
gnu: Add r-rbgl. 
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
 2016-09-26 03:25:23 +02:00
Ricardo Wurmus
e816377374
gnu: Add r-annotationforge. 
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
 2016-09-26 03:25:17 +02:00
Ricardo Wurmus
9e330278ee
gnu: Add r-batchjobs. 
* gnu/packages/statistics.scm (r-batchjobs): New variable.
 2016-09-26 03:25:11 +02:00
Ricardo Wurmus
dc4fb16d25
gnu: Add r-fail. 
* gnu/packages/statistics.scm (r-fail): New variable.
 2016-09-26 03:25:06 +02:00
Ricardo Wurmus
cd26ec3bbf
gnu: Add r-bbmisc. 
* gnu/packages/statistics.scm (r-bbmisc): New variable.
 2016-09-26 03:25:02 +02:00
Ricardo Wurmus
929d4aaea1
gnu: Add r-checkmate. 
* gnu/packages/statistics.scm (r-checkmate): New variable.
 2016-09-26 03:24:59 +02:00
Ricardo Wurmus
0d90462fa3
gnu: Add r-backports. 
* gnu/packages/statistics.scm (r-backports): New variable.
 2016-09-26 03:24:55 +02:00
Ricardo Wurmus
8e1bfc7e8c
gnu: Add r-sendmailr. 
* gnu/packages/statistics.scm (r-sendmailr): New variable.
 2016-09-26 03:24:50 +02:00
Ricardo Wurmus
0c77fd50f8
gnu: Add r-pheatmap. 
* gnu/packages/statistics.scm (r-pheatmap): New variable.
 2016-09-26 03:24:44 +02:00
Ricardo Wurmus
092197a548
gnu: Add r-matrix. 
* gnu/packages/statistics.scm (r-matrix): New variable.
 2016-09-26 03:21:32 +02:00
Ricardo Wurmus
ad34f0ac96
gnu: Add r-deseq2. 
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
 2016-09-26 03:21:27 +02:00
Ricardo Wurmus
2301fd3e4d
gnu: Add r-genefilter. 
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
 2016-09-26 03:21:19 +02:00
Ricardo Wurmus
2d21d44dbd
gnu: Add r-hmisc. 
* gnu/packages/statistics.scm (r-hmisc): New variable.
 2016-09-26 03:21:13 +02:00
Ricardo Wurmus
07a664cde0
gnu: Add r-geneplotter. 
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
 2016-09-26 03:21:07 +02:00
Ricardo Wurmus
8c6de58849
gnu: Add r-annotate. 
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
 2016-09-26 03:20:59 +02:00
Ricardo Wurmus
2213730c5b
gnu: Add r-rpart. 
* gnu/packages/statistics.scm (r-rpart): New variable.
 2016-09-26 03:20:52 +02:00
Ricardo Wurmus
356c6d61a6
gnu: Add r-rjson. 
* gnu/packages/web.scm (r-rjson): New variable.
 2016-09-26 03:20:44 +02:00
Ricardo Wurmus
bbed0ab6b4
gnu: Add r-hwriter. 
* gnu/packages/web.scm (r-hwriter): New variable.
 2016-09-26 03:20:19 +02:00
Ricardo Wurmus
57a31efb4b
gnu: tcc: Disable build on MIPS. 
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
 2016-09-26 03:01:06 +02:00
Arun Isaac
9311722703
gnu: Add optipng. 
* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-09-25 16:53:00 -04:00
Ludovic Courtès
5babe521c8
system: Don't emit a GRUB 'search' command when passed a GRUB file name. 
Reported by Tomáš Čech <tcech@suse.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>.

* gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE
is a string that does not denote an absolute file name.
 2016-09-26 00:18:39 +09:00
Ricardo Wurmus
7acd71d13d
gnu: epiphany: Drop NSS and libwnck. 
These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
 2016-09-25 13:04:00 +02:00
Ricardo Wurmus
9f58932ecc
gnu: epiphany: Update to 3.22.0. 
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
 2016-09-25 13:04:00 +02:00
Ricardo Wurmus
58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3. 
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
 2016-09-25 13:04:00 +02:00
Mark H Weaver
1535c0a6b6
gnu: linux-libre: Update to 4.7.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
 2016-09-25 03:57:57 -04:00
Mark H Weaver
dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
 2016-09-25 03:55:37 -04:00
John Darrington
94c5dc8c03
gnu: Add pam-krb5 
* gnu/packages/admin.scm (pam-krb5): New variable.
 2016-09-25 06:40:29 +02:00
Efraim Flashner
a8f3d49280
gnu: privoxy: Update to 3.0.26. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
 2016-09-24 23:09:14 +03:00
Efraim Flashner
0ab57b0d04
gnu: tor: Update to 0.2.8.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
 2016-09-24 22:27:16 +03:00
Carlos Sánchez de La Lama
0f65f54ebd
system: grub.cfg uses correct file names when store is not in root partition. 
Fixes <http://bugs.gnu.org/24346>.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).

* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-24 17:48:13 +09:00
Ludovic Courtès
d7b342d815
system: 'read-boot-parameters' reads the 'initrd' parameter. 
* gnu/system.scm (<boot-parameters>)[initrd]: New field.
(read-boot-parameters): Read the 'initrd' element and fill in the
'initrd' field of the result.
 2016-09-24 17:48:12 +09:00
ng0
6fc48c2ee2
gnu: Add gforth. 
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-09-24 14:07:12 +08:00
Rene Saavedra
54021cd8c6
gnu: Add gnome-calculator. 
* gnu/packages/gnome.scm (gnome-calculator): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-09-24 00:51:52 -04:00
Erik Edrosa
8058880017
gnu: Add cmark. 
* gnu/packages/markdown.scm (cmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 20:56:51 -04:00
ng0
93666cf783
gnu: Add enet. 
* gnu/packages/networking.scm (enet): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 19:18:10 -04:00
Danny Milosavljevic
03ddad84ba
gnu: flashrom: Update to 0.9.9 
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 19:03:19 -04:00
ng0
0f5de84e98
gnu: Add nickle. 
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 18:54:24 -04:00
Efraim Flashner
047cd01d11
gnu: orpheus: Use 'modify-phases'. 
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
 2016-09-23 17:38:25 +03:00
Efraim Flashner
5bd6270211
gnu: orpheus: Fix build on mips64el. 
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
 2016-09-23 17:38:24 +03:00
Nicolas Goaziou
236d522b80
gnu: giac-xcas: Update to 1.2.2-81. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 09:57:20 -04:00
Ricardo Wurmus
8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable. 
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
 2016-09-23 13:13:41 +02:00
Ricardo Wurmus
646a84338d
gnu: sra-tools: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
 2016-09-23 11:46:53 +02:00
Ricardo Wurmus
40974c933e
gnu: ncbi-vdb: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
 2016-09-23 11:46:26 +02:00
Ricardo Wurmus
48b419ebd6
gnu: ngs-sdk: Update to 1.2.5. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
 2016-09-23 11:45:24 +02:00
Ricardo Wurmus
4781820147
gnu: randomjungle: Only build on x86_64 and i686. 
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
 2016-09-23 08:23:51 +02:00
Efraim Flashner
fc3b2cbb04
gnu: retroarch: Update to 1.3.6. 
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
 2016-09-23 09:02:03 +03:00
Ricardo Wurmus
5989d4eaac
gnu: synfig: Fix isnan error. 
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
 2016-09-23 07:45:16 +02:00
Eric Bavier
56f33f3fd5
gnu: ccache: Upgrade to 3.3.1. 
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
 2016-09-22 23:56:17 -05:00
Eric Bavier
bd368c7174
gnu: ccache: Use modify-phases. 
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
 2016-09-22 23:43:20 -05:00
Eric Bavier
1a0ae573c7
gnu: boost: Add -j for build. 
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
 2016-09-22 22:34:04 -05:00
Eric Bavier
6941965526
gnu: boost: Upgrade to 1.61.0. 
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
 2016-09-22 22:33:37 -05:00
ng0
71b611bc34
gnu: Add ghc-transformers-0.4.2.0. 
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:01 -04:00
ng0
10a03d6665
gnu: Add ghc-system-fileio. 
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
23feb6e4fb
gnu: Add ghc-system-filepath. 
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
58c85b1f82
gnu: Add ghc-options. 
* gnu/packages/haskell.scm (ghc-options): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
c92d944c1e
gnu: Add ghc-chell-quickcheck. 
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:10:00 -04:00
ng0
475d366866
gnu: Add ghc-chell-quickcheck-bootstrap. 
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
8ea94489fd
gnu: Add ghc-chell. 
* gnu/packages/haskell.scm (ghc-chell): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
7e06c4aa98
gnu: Add ghc-options-bootstrap. 
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
25b3bdb5ff
gnu: Add ghc-shelly. 
* gnu/packages/haskell.scm (ghc-shelly): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:59 -04:00
ng0
3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap. 
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap. 
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
2b41f4afc1
gnu: Add ghc-lifted-async. 
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:58 -04:00
ng0
6aab9ba6d4
gnu: Add ghc-constraints. 
* gnu/packages/haskell.scm (ghc-constraints): New variable.
 2016-09-22 20:09:58 -04:00
ng0
e7e2f03c8f
gnu: Add ghc-array. 
* gnu/packages/haskell.scm (ghc-array): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
3db882776b
gnu: Add ghc-graphviz. 
* gnu/packages/haskell.scm (ghc-graphviz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
d4cca6b0ae
gnu: Add ghc-fgl-arbitrary. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0. 
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:57 -04:00
ng0
6e0741f739
gnu: Add ghc-wl-pprint-text. 
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
3b281f5b8d
gnu: Add ghc-process. 
* gnu/packages/haskell.scm (ghc-process): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
4fec5cdbf4
gnu: Add ghc-directory. 
* gnu/packages/haskell.scm (ghc-directory): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:56 -04:00
ng0
e1a56bb258
gnu: Add ghc-colour. 
* gnu/packages/haskell.scm (ghc-colour): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
1d9db656c9
gnu: Add ghc-bytestring. 
* gnu/packages/haskell.scm (ghc-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
41167bd255
gnu: Add ghc-monads-tf. 
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
d52ca22ac3
gnu: Add ghc-patience. 
* gnu/packages/haskell.scm (ghc-patience): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:55 -04:00
ng0
027b79762a
gnu: Add ghc-findbin. 
* gnu/packages/haskell.scm (ghc-findbin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
54c37341d1
gnu: Add ghc-transformers. 
* gnu/packages/haskell.scm (ghc-transformers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
f827033102
gnu: Add ghc-tar. 
* gnu/packages/haskell.scm (ghc-tar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
a71f861752
gnu: Add ghc-bytestring-handle. 
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:54 -04:00
ng0
e9e519be76
gnu: Add ghc-sandi. 
* gnu/packages/haskell.scm (ghc-sandi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
ab12bd3a04
gnu: Add ghc-tasty-th. 
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa. 
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
7e444dba6e
gnu: Add ghc-regex-tdfa. 
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:53 -04:00
ng0
d58dc851f9
gnu: Add ghc-regex-applicative. 
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
1a0dbf0ded
gnu: Add ghc-haskeline. 
* gnu/packages/haskell.scm (ghc-haskeline): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
7c14128dd0
gnu: Add ghc-data-ordlist. 
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
c763b8ae89
gnu: Add ghc-cryptohash. 
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:52 -04:00
ng0
eddc69241b
gnu: ghc-cryptonite: Update to 0.19. 
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
ng0
301e762ad1
gnu: Add ghc-binary. 
* gnu/packages/haskell.scm (ghc-binary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
ng0
cc5e16a764
gnu: Add ghc-base16-bytestring. 
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 20:09:51 -04:00
Leo Famulari
67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
 2016-09-22 20:09:51 -04:00
Efraim Flashner
5895f193c9
gnu: reptyr: Remove mips64el support. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
 2016-09-22 22:42:47 +03:00
Efraim Flashner
cda5e76f51
gnu: python2-django: Fix typo in native-inputs. 
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
 2016-09-22 22:42:47 +03:00
Efraim Flashner
7adc698f69
gnu: python-fake-factory: Update to 0.7.2. 
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
 2016-09-22 22:42:46 +03:00
Efraim Flashner
0dbb7ac2df
gnu: plink: Set endian-ness on more architectures. 
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-09-22 22:42:37 +03:00
John Darrington
c788c5feb1
gnu: Add ytalk 
* gnu/packages/messaging.scm (ytalk): New variable.
 2016-09-22 21:07:33 +02:00
Leo Famulari
163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes]. 
Fixes CVE-2016-{6304,6305,6307,6308}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
 2016-09-22 13:45:54 -04:00
Leo Famulari
50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes]. 
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
 2016-09-22 13:45:54 -04:00
Efraim Flashner
62d00095c2
gnu: prank: Allow building on 32-bit machines. 
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
 2016-09-22 19:21:16 +03:00
Mark H Weaver
a143e1b877
gnu: webkitgtk: Update to 2.14.0. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
 2016-09-22 11:59:58 -04:00
Efraim Flashner
b8367c0090
gnu: offlineimap: Update to 7.0.7. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.7.
 2016-09-22 11:19:11 +03:00
Ben Woodcroft
951da521a9
gnu: diamond: Update to 0.8.22. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.22.
 2016-09-22 16:36:00 +10:00
ng0
c5776c87bb
gnu: perl-io-socket-ssl: Update to 2.038. 
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.038.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-22 01:44:50 -04:00
Leo Famulari
1df00601b2
gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}]. 
* gnu/packages/irc.scm (irssi): Update to 0.8.20.
 2016-09-22 00:38:13 -04:00
Ricardo Wurmus
39162ee49b
gnu: extempore: Only build on x86_64. 
* gnu/packages/algebra.scm (kiss-fft-for-extempore)[supported-systems]:
Only build on x86_64.
* gnu/packages/gl.scm (nanovg-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/image.scm (stb-image-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/llvm.scm (llvm-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/music.scm (portmidi-for-extempore)[supported-systems]:
Likewise.
(extempore)[supported-systems]: Likewise.
 2016-09-21 21:47:56 +02:00
Ricardo Wurmus
b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted. 
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
 2016-09-21 21:38:39 +02:00
Ricardo Wurmus
3f1c722ec7
gnu: r-htmltools: Ensure temporary files can be deleted. 
* gnu/packages/web.scm (r-htmltools)[arguments]: Add phase
"copy-files-without-mode".
 2016-09-21 21:38:39 +02:00
Efraim Flashner
538c0e3b69
gnu: openlibm: Remove support for mips. 
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
 2016-09-21 22:36:52 +03:00
Efraim Flashner
6e8faf7794
gnu: jellyfish: Limit to x86_64. 
* gnu/packages/bioinformatics.scm (jellyfish)[supported-systems}: New
field, limit support to x86_64.
 2016-09-21 22:36:52 +03:00