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Author SHA1 Message Date
Andreas Enge
2ae22cafe7
gnu: pari-gp: Update to 2.15.0. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.0. Modernize syntax.
 2022-09-21 13:29:13 +02:00
Hunter Jozwiak
e883ea89c6
gnu: Add espeakup. 
* gnu/packages/accessibility.scm (espeakup): New variable.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 13:20:56 +02:00
Ricardo Wurmus
d871080a41
gnu: Add r-chromunity. 
* gnu/packages/bioinformatics.scm (r-chromunity): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus
a7f6392caa
gnu: Add r-skitools. 
* gnu/packages/bioinformatics.scm (r-skitools): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus
af663c9e48
gnu: Add r-gchain. 
* gnu/packages/bioinformatics.scm (r-gchain): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus
6ad4d74aca
gnu: Add r-gtrack. 
* gnu/packages/bioinformatics.scm (r-gtrack): New variable.
 2022-09-21 11:09:46 +02:00
Ricardo Wurmus
29634a4ce3
gnu: Add r-bamutils. 
* gnu/packages/bioinformatics.scm (r-bamutils): New variable.
 2022-09-21 11:09:45 +02:00
Ricardo Wurmus
4bd64dde2b
gnu: Add r-gutils. 
* gnu/packages/bioinformatics.scm (r-gutils): New variable.
 2022-09-21 11:09:41 +02:00
Artyom V. Poptsov
d4090c3027
gnu: maven-slf4j-provider: Fix style. 
* gnu/packages/maven.scm (maven-slf4j-provider): Fix style.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:59 +02:00
Artyom V. Poptsov
79897a3701
gnu: maven-slf4j-provider: Bugfix. 
* gnu/packages/maven.scm (maven-slf4j-provider): Bugfix: Don't use "tar" to
  extract "java-slf4j-simple-source" as it is already unpacked; recursively copy
  the source instead.

Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 2022-09-21 09:07:54 +02:00
Hilton Chain
344405475a
gnu: telegram-desktop: Use API ID from Snap builds. 
* gnu/packages/telegram.scm (telegram-desktop)[#:configure-flags]: Use API ID
from Telegram's official Snap builds.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain
a7164abcd0
gnu: telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (%telegram-version)
(cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop)
(lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop)
(lib-lottie-for-telegram-desktop, lib-qr-for-telegram-desktop)
(lib-rlottie-for-telegram-desktop,lib-rpl-for-telegram-desktop)
(lib-spellcheck-for-telegram-desktop, lib-storage-for-telegram-desktop)
(lib-tl-for-telegram-desktop, lib-ui-for-telegram-desktop)
(lib-waylandshells-for-telegram-desktop, lib-webrtc-for-telegram-desktop)
(lib-webview-for-telegram-desktop, tgcalls-for-telegram-desktop): New variables.
(telegram-desktop)[arguments]: Convert to list of G-Expressions.
<#:phases>: Inline cmake-helpers-for-telegram-desktop,
codegen-for-telegram-desktop, lib-base-for-telegram-desktop,
lib-crl-for-telegram-desktop, lib-lottie-for-telegram-desktop,
lib-qr-for-telegram-desktop, lib-rlottie-for-telegram-desktop,
lib-rpl-for-telegram-desktop, lib-spellcheck-for-telegram-desktop,
lib-storage-for-telegram-desktop, lib-tl-for-telegram-desktop,
lib-ui-for-telegram-desktop, lib-waylandshells-for-telegram-desktop,
lib-webrtc-for-telegram-desktop, lib-webview-for-telegram-desktop,
and tgcalls-for-telegram-desktop.
[native-inputs]: Remove cmake-helpers.  Drop labels.
[inputs]: Remove codegen-source, lib-base-source, lib-crl-source,
lib-lottie-source, lib-qr-source, lib-rlottie-source, lib-rpl-source,
lib-spellcheck-source, lib-storage-source, lib-tl-source, lib-ui-source,
lib-waylandshells-source, lib-webrtc-source, lib-webview-source and
tgcalls-source.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain
e76c93a56b
gnu: webrtc-for-telegram-desktop: Use modern package style. 
* gnu/packages/telegram.scm (libvpx-for-telegram-desktop)
(libyuv-for-telegram-desktop): New variables.
(webrtc-for-telegram-desktop)[arguments]: Convert to list of G-Expressions.
Inline libvpx-for-telegram-desktop and libyuv-for-telegram-desktop.
[inputs]: Remove libvpx and libyuv.  Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:27:23 +02:00
Hilton Chain
425e4f6fcd
gnu: telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Hilton Chain
5ca7ec92f5
gnu: webrtc-for-telegram-desktop: Delete trailing #t. 
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop)[source]: Delete
trailing #t.
[arguments]<#:phases>: Likewise.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:57 +02:00
Sughosha
cb2d5063a0
gnu: Add gnome-console. 
* gnu/packages/gnome.scm (gnome-console): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Sughosha
d6a16a1dc4
gnu: Add gnome-text-editor. 
* gnu/packages/gnome.scm (gnome-text-editor): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-09-21 06:26:56 +02:00
Ricardo Wurmus
f256614891
gnu: guile-aiscm-next: Deprecate in favor of guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): Define as a deprecated
name for guile-aiscm.
 2022-09-20 23:57:18 +02:00
Ricardo Wurmus
0d7f2469b5
gnu: guile-aiscm: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (guile-aiscm): Update to 0.24.2.
[arguments]: Add configure flags for OpenCV modules; add build phase
'find-clearsilver; adjust phase 'use-llvm-config; add phase
'disable-broken-test.
[inputs]: Add clearsilver, libgc, opencv, and tensorflow; replace ffmpeg with
ffmpeg-4.
[native-inputs]: Add protobuf-c; replace clang-13 and llvm-13 with clang-11
and llvm-11, respectively.
 2022-09-20 23:57:18 +02:00
Nicolas Goaziou
97bbb9d603
gnu: emacs-rustic: Update to 3.4. 
* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 3.4.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou
81cda4134a
gnu: emacs-repl-toggle: Update to 0.7.2. 
* gnu/packages/emacs-xyz.scm (emacs-repl-toggle): Update to 0.7.2.
 2022-09-20 21:22:07 +02:00
Nicolas Goaziou
62911821a1
gnu: emacs-boxquote: Update to 2.3. 
* gnu/packages/emacs-xyz.scm (emacs-boxquote): Update to 2.3.
 2022-09-20 21:22:06 +02:00
Morgan Smith
90a73f6569
gnu: emacs-osm: Update to 0.8. 
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.8.
[arguments]<#:phases>: Add MAKEINFO phase.
[native-inputs]: Add TEXINFO.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
pinoaffe
7c9d8b2e96
gnu: Add emacs-pdfgrep. 
* gnu/packages/emacs-xyz.scm (emacs-pdfgrep): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-09-20 21:22:06 +02:00
Nicolas Goaziou
84dae49340
gnu: emacs-setup: Update to 1.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-setup): Update to 1.3.2.
 2022-09-20 21:22:05 +02:00
Nicolas Goaziou
830405eb48
gnu: emacs-taxy: Update to 0.10.1. 
* gnu/packages/emacs-xyz.scm (emacs-taxy): Update to 0.10.1.
 2022-09-20 21:22:05 +02:00
Ludovic Courtès
6abdcef4a6
linux-container: 'container-excursion*' marks its FDs as FD_CLOEXEC. 
Fixes <https://issues.guix.gnu.org/57827>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

Fixes a regression introduced with the Shepherd 0.9.2 upgrade in
1ba0e38267, whereby IN and OUT would no
longer be closed when 'fork+exec-command/container' would call
'exec-command*' as part of the THUNK passed to 'container-excursion*'.

This is because the Shepherd 0.9.2 assumes file descriptors are properly
marked as O_CLOEXEC and, consequently, 'exec-command' no longer run the
close(2) loop prior to 'exec'.

* gnu/build/linux-container.scm (container-excursion*): Add calls to
'fcntl'.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès
76c58ed59c
home: import: Use (guix read-print) to render the config file. 
* guix/scripts/home/import.scm (manifest+configuration-files->code):
Insert calls to 'comment' and 'vertical-space'.
(import-manifest): Use 'pretty-print-with-comments/splice' instead of a
loop on 'pretty-print'.
* tests/home-import.scm (remove-recursively): New procedure.
(eval-test-with-home-environment): Use it.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès
d0a1e48944
read-print: Add rule for 'home-bash-configuration'. 
* guix/read-print.scm (%newline-forms): Add 'home-bash-configuration'.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès
7a698da0d0
read-print: Correctly support multiple same-named newline forms. 
Previously (home-environment (services ...)) would not be considered a
"newline form".  This fixes it.

* guix/read-print.scm (newline-form?): Use 'vhash-foldq*' instead of
'vhash-assq' and iterate over candidates.
* tests/read-print.scm: Add test.
 2022-09-20 19:24:31 +02:00
Ludovic Courtès
818220f1cc
weather: Actually show the weather. 
* guix/scripts/weather.scm (report-server-coverage): Show a weather icon.
 2022-09-20 19:24:31 +02:00
Ricardo Wurmus
8084e3bdb3
gnu: python-pyvcf: Update to 0.6.8-0.476169c. 
* gnu/packages/bioinformatics.scm (python-pyvcf): Update to 0.6.8-0.476169c.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus
9ed635cd9a
gnu: python-pyvcf: Use older setuptools. 
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Replace
python-setuptools with python-setuptools-for-tensorflow.
 2022-09-20 17:02:34 +02:00
Ricardo Wurmus
87a9f03b32
gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3. 
* gnu/packages/cran.scm (r-mlr3ordinal): Update to 0.1.0-9000-1.736e3a3.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
ec92bcaadd
import/cran: description->package: Use COND and computed booleans. 
* guix/import/cran.scm (description->package): Use COND with previously
computed booleans instead of using CASE on REPOSITORY.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
8c620a6036
import/cran: download: Accept optional REF argument. 
* guix/import/cran.scm (download): Accept REF argument for git downloads.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
f8f3cffedc
gnu: r-desctools: Update to 0.99.46. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.46.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
659efed5c1
gnu: r-clubsandwich: Update to 0.5.8. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.8.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
18df77f876
gnu: r-forcats: Update to 0.5.2. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.2.
[propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-withr.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
16c2f27750
gnu: r-sn: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-sn): Update to 2.1.0.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
48e46212c5
gnu: r-matrixmodels: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-1.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
3c35d95b32
gnu: r-rrcov: Update to 1.7-1. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-1.
 2022-09-20 17:02:33 +02:00
Ricardo Wurmus
04511fa0de
gnu: r-statmod: Update to 1.4.37. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.37.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
8313464be6
gnu: r-hmisc: Update to 4.7-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.7-1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
2d34ff8133
gnu: r-base64: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-base64): Update to 2.0.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
b02b5544f2
gnu: r-tidyr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.2.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
5667e371fa
gnu: r-viridislite: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.1.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
aa0865e8cc
gnu: r-rsqlite: Update to 2.2.17. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.17.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
734f64aa17
gnu: r-gtable: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.1.
[native-inputs]: Add r-knitr.
 2022-09-20 17:02:32 +02:00
Ricardo Wurmus
855bd834c3
gnu: r-rmarkdown: Update to 2.16. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.16.
 2022-09-20 17:02:32 +02:00