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Author SHA1 Message Date
Ricardo Wurmus
20a3758c5c
gnu: r-vctrs: Update to 0.6.4. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.4.

Change-Id: I01055367458c0afbe1d4ff18874d869236cfe769
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
928edcfdb5
gnu: r-utf8: Update to 1.2.4. 
* gnu/packages/cran.scm (r-utf8): Update to 1.2.4.

Change-Id: If9c4a7b7b71f664dcda63fb8753c8acfec84a582
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
cedf4c882d
gnu: r-aricode: Update to 1.0.3. 
* gnu/packages/cran.scm (r-aricode): Update to 1.0.3.

Change-Id: Ib6336872d309cac951830df94b080ee4dce9ff2e
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
3f740ae9b9
gnu: r-useful: Update to 1.2.6.1. 
* gnu/packages/cran.scm (r-useful): Update to 1.2.6.1.

Change-Id: I9de94d8f9ed7027dd900e8f6bab5cecc0e6a913e
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
9444c2301e
gnu: r-ggrepel: Update to 0.9.4. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.4.

Change-Id: I190c25ddfe11230daa827052f49caf07a591ad58
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
bf939c5f96
gnu: r-rpostgres: Update to 1.4.6. 
* gnu/packages/cran.scm (r-rpostgres): Update to 1.4.6.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.

Change-Id: I9bfa32947e3bcb3f0ce094f2313f68b8939bec0a
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
6b35095a23
gnu: r-drat: Update to 0.2.4. 
* gnu/packages/cran.scm (r-drat): Update to 0.2.4.

Change-Id: I743e4b2399773f0ab56c15a40eaf5f52ebf6cb79
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
666bf3eb3a
gnu: r-sp: Update to 2.1-1. 
* gnu/packages/cran.scm (r-sp): Update to 2.1-1.

Change-Id: Ib1c37ccf1ac44649c563f5bcb071eff1e743a0a6
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
a56ae72724
gnu: r-rcppthread: Update to 2.1.6. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.6.

Change-Id: I242d8099bdfaf039a3913cf8afc71ebf6335df5f
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
0e36a85463
gnu: r-jqr: Update to 1.3.1. 
* gnu/packages/cran.scm (r-jqr): Update to 1.3.1.

Change-Id: I948fd0707069baf38724faa487a69e8d4cbf15e2
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
90806b5b8e
gnu: r-v8: Update to 4.4.0. 
* gnu/packages/cran.scm (r-v8): Update to 4.4.0.

Change-Id: Ib839b34969c5b3d441121f3b65a2013cabf4be79
 2023-10-25 16:58:41 +02:00
Ricardo Wurmus
b6d07b7475
gnu: r-bwstest: Update to 0.2.3. 
* gnu/packages/cran.scm (r-bwstest): Update to 0.2.3.

Change-Id: I4ecafaa0fb68e36df5419276781ac2690337a383
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
04cef141c4
gnu: r-metap: Update to 1.9. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.9.

Change-Id: I60ad521bf4a02505f5bafd3c3b0641395a15c308
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
5326f0c76e
gnu: r-biomartr: Update to 1.0.6. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.6.

Change-Id: Ifdbc61ef9b34aee441524ea15f0b5a7dfdd76052
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
d371eeea1a
gnu: r-covr: Update to 3.6.3. 
* gnu/packages/cran.scm (r-covr): Update to 3.6.3.

Change-Id: I1cbfa9c4bb1bc6eff8fef6e3096969593acbe1de
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
8027b0a269
gnu: Add python-funsor. 
* gnu/packages/machine-learning.scm (python-funsor): New variable.

Change-Id: Ibd4b993e4d55a6fdda70fe2b6cf4f665730b6739
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
136700181b
gnu: Add python-assertpy. 
* gnu/packages/python-check.scm (python-assertpy): New variable.

Change-Id: Ia17d256361eebe977a7d663b473e6c907ffe4ec2
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
0618aaba01
gnu: python-sphinx-gallery: Update to 0.14.0. 
* gnu/packages/sphinx.scm (python-sphinx-gallery): Update to 0.14.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom phases; add custom build phase
'delete-webp-example; move test flags to #:test-flags.
[propagated-inputs]: Add python-jupyterlite-sphinx.

Change-Id: I58f4b952fe5a2bf942d77813a8a2eeef2e4750b6
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
617bca2ab0
gnu: Add python-jupyterlite-sphinx. 
* gnu/packages/jupyter.scm (python-jupyterlite-sphinx): New variable.

Change-Id: I182c98e0c47d28012882994824232c3473ba3dcd
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
1b9a0135fb
gnu: Add python-jupyterlite-core. 
* gnu/packages/jupyter.scm (python-jupyterlite-core): New variable.

Change-Id: I3b015f7bbb45d9575280a5b8c01d67459d6f143e
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
f1499ff35a
gnu: Add r-deming. 
* gnu/packages/cran.scm (r-deming): New variable.

Change-Id: I9374a69603f88dd8c78a3c5bd2bdf2b992de2101
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
565c643b74
gnu: r-httpuv: Update to 1.6.12. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.12.
[arguments]: Remove.
[native-inputs]: Add pkg-config.

Change-Id: I1ae9378ce65a689869edd921f3f64a99aa714788
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
bf3ec59b29
gnu: r-ggplot2: Update to 3.4.4. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.4.

Change-Id: Ia21a38da8fdbcefaa6521a6843c4431b0d1ff47d
 2023-10-25 16:58:40 +02:00
Ricardo Wurmus
fda8b9e8de
gnu: r-gdata: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-gdata): Update to 3.0.0.
[inputs]: Remove perl.

Change-Id: If9a66e4c8a8030214d53d7b2934c79cd098a278c
 2023-10-25 16:58:40 +02:00
Tobias Geerinckx-Rice
d461dd81cd
gnu: Remove left-over python-pycrypto patches. 
This follows up on commit a55e18f17c.

Change-Id: If61e46da1dc4f352b362ad3db42859322846984b
 2023-10-22 02:00:00 +02:00
Ricardo Wurmus
aabfddbe8b
gnu: Add r-ggdist. 
* gnu/packages/cran.scm (r-ggdist): New variable.

Change-Id: Ia9f57e1efcbb9df08a79d9e51bc438fa64fe61e2
 2023-10-25 13:33:12 +02:00
Paul A. Patience
c6d2bb9d0a
gnu: gnuplot: Update to 5.4.9. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.9.
[arguments]<#:configure-flags>: Add --with-qt=no.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:59 +02:00
André Batista
efe9e0ce0c
gnu: lighttpd: Update to 1.4.72. 
* gnu/packages/web.scm (lighttpd): Update to 1.4.72.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:59 +02:00
Paul A. Patience
eb194aba18
gnu: python-versioneer: Update to 0.29. 
* gnu/packages/python-xyz.scm (python-versioneer): Update to 0.29.
[build-system]: Switch to pyproject-build-system.
[arguments, native-inputs, propagated-inputs]: New fields.
[license]: Set to Unlicense.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:59 +02:00
Hilton Chain
50fa8bd0a3
gnu: picard: Update to 2.10. 
* gnu/packages/music.scm (picard): Update to 2.10.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Cayetano Santos
4b72bd264a
gnu: emacs-doom-modeline: Update to 4.0.1. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 4.0.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Cayetano Santos
6fa7ed0411
gnu: emacs-exwm: Update to 0.28. 
* gnu/packages/emacs-xyz.scm (emacs-exwm): Update to 0.28.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Bruno Victal
1e5ec9d853
gnu: hplip: Fix USB timeouts. 
* gnu/packages/patches/hplip-usb-timeout.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/cups.scm (hplip): Use it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Imran Iqbal
a0060934a5
gnu: curlie: Update to 1.7.2. 
* gnu/packages/curl.scm (curlie): Update to 1.7.2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: Ic54bb5c1975fe8b954b4ab4b72ca5748c0924b7a
 2023-10-25 11:59:58 +02:00
Vagrant Cascadian
137ff33daf
gnu: diffoscope: Update to 251. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 251.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Bruno Victal
0ab3b59149
gnu: mympd: Update to 12.1.1. 
* gnu/packages/mpd.scm (mympd): Update to 12.1.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Artyom V. Poptsov
62d2155cc2
gnu: guile-dsv: Update to 0.7.1. 
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.7.1.
  [arguments]: Remove "strip" phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-25 11:59:58 +02:00
Guillaume Le Vaillant
e0b94a4d27
gnu: gqrx: Update to 2.17.3. 
* gnu/packages/radio.scm (gqrx): Update to 2.17.3.

Change-Id: Ie5722c0f693e41bb1eadb3e2397ce3f4404b8664
 2023-10-25 11:26:59 +02:00
Guillaume Le Vaillant
9b42568da6
gnu: eisl: Update to 3.50. 
* gnu/packages/lisp.scm (eisl): Update to 3.50.

Change-Id: Iecefae965ab5a4f8a6d7e5cff2c9d2c2a02668ac
 2023-10-25 11:05:59 +02:00
Artyom Bologov
1da091366a
gnu: abcl: Update to 1.9.2. 
* gnu/packages/java.scm (abcl): Update to 1.9.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-10-25 10:42:22 +02:00
Mark H Weaver
00747316ee
gnu: icecat: Update to 115.4.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2023-5721, CVE-2023-5724, CVE-2023-5725,
CVE-2023-5726, CVE-2023-5727, CVE-2023-5728, CVE-2023-5730, and
CVE-2023-5732.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2023-10-24 15:56:39 -04:00
Simon Tournier
7e4324575c
services: admin: Export rottlog-configuration accessors. 
* gnu/services/admin.scm (<rottlog-configuration>): Rename accessors
rottlog-rottlog to rottlog-configuration-rottlog, rottlog-rc-file to
rottlog-configuration-rc-file, rottlog-rotations to
rottlog-configuration-rotations, rottlog-jobs to rottlog-configuration-jobs.
(rottlog-etc, rottlog-jobs-or-default, rottlog-service-type): Adjust
accordingly.
 2023-10-24 18:51:39 +02:00
Cayetano Santos
f3714b3d5f
gnu: Add emacs-pacfiles-mode. 
* gnu/packages/emacs-xyz.scm (emacs-pacfiles-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I3ddb9ba2beff5466dc235915da18365f1fd389c2
 2023-10-24 18:06:21 +02:00
Artyom V. Poptsov
6fd589898c
gnu: go-ipfs: Update to 0.15.0. 
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.15.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-24 18:06:21 +02:00
Artyom V. Poptsov
2919b5ae31
gnu: Deprecate the "go-ipfs" variable. 
* gnu/packages/ipfs.scm (go-ipfs): Rename to "kubo".
  (go-ipfs): Define as deprecated by "kubo".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-24 18:06:21 +02:00
André Batista
1f6babf0c4
gnu: tor: Update to 0.4.8.7. 
* gnu/packages/tor.scm (tor): Update to 0.4.8.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-24 18:06:21 +02:00
Ludovic Courtès
04215779ba
gnu: guile-simple-zmq: Update to d25d186. 
Includes a fix for a use-after-free bug:
<https://github.com/jerry40/guile-simple-zmq/pull/20>

* gnu/packages/guile-xyz.scm (guile-simple-zmq): Update to d25d186.

Change-Id: I1dfb7b1c0e97bb92425ade676ab29be33b8ae20d
 2023-10-24 18:06:21 +02:00
Ludovic Courtès
216f8ffff4
doc: cookbook: Add cross references to the manual regarding manifests. 
* doc/guix-cookbook.texi (The benefits of manifests)
(Reproducible profiles): Add cross-references.
 2023-10-24 18:06:21 +02:00
Ludovic Courtès
37b0ddbcb7
doc: cookbook: Suggest ‘guix shell’ as an alternative to multiple profiles. 
Multiple profiles are relatively hard to set up and maintain, especially
for newcomers.  Thus, suggest ‘guix shell’ as an alternative.

* doc/guix-cookbook.texi (Guix Profiles in Practice): Add note
linking to ‘guix shell’.
(The benefits of manifests): Remove outdated info about ‘guix
environment’ and profiles that may be GC’d.  Update.
 2023-10-24 18:06:21 +02:00
Ludovic Courtès
569c085927
doc: Mention Guix Home in “Getting Started”. 
* doc/guix.texi (Getting Started): Mention Guix Home.
(Home Configuration): Remove “still under development” note.
 2023-10-24 18:06:20 +02:00