See also 9e5496e0ae and
718dc7d4a5.
* gnu/packages/idris.scm (idris)[arguments]: Add a phase that sets
'LD_LIBRARY_PATH', and one that restores the 'libidris_rts.a'
library back to the default output.
* gnu/packages/emacs.scm (emacs): Update to 27.1.
[source]: In snippet, use 'find-files' to find 'eshell/esh-groups.el'
if it exists, but gracefully handle its absence.
[arguments]: Add "--with-cairo" to configure-flags. Add 'restore-emacs-pdmp'
and 'make-compressed-files-writable' phases. Explicitly return #t from
'install-site-start' phase.
[inputs]: Add cairo, pango, harfbuzz, jansson, and gmp. Remove imagemagick.
(emacs-next): Remove variable.
(emacs-minimal, emacs-xwidgets): Use 'package/inherit'.
[arguments]: Remove 'restore-emacs-pdmp' phase.
(emacs-no-x): Use 'package/inherit'.
[arguments]: Remove "--with-cairo" from configure-flags. Remove
'restore-emacs-pdmp' phase.
[inputs]: Remove cairo, pango, and harfbuzz.
(emacs-no-x-toolkit): Use 'package/inherit'.
[arguments]: Remove 'restore-emacs-pdmp' phase. Remove superfluous
quasiquote+unquote-splicing pair.
(emacs-wide-int): Use 'package/inherit'.
(guile-emacs): Use 'package/inherit'.
[arguments]: Remove "--with-cairo" from configure-flags. Remove
'restore-emacs-pdmp' phase.
* gnu/packages/patches/emacs-ignore-empty-xim-styles.patch,
gnu/packages/patches/emacs-source-date-epoch.patch: Adapt to
apply cleanly to emacs-27.1.
* gnu/packages/patches/emacs-exec-path.patch: Replace with the previous
contents of 'emacs27-exec-path.patch', but remove the superfluous comment
about it being "like emacs-exec-path.patch, but for Emacs 27".
* gnu/packages/patches/emacs27-exec-path.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove 'emacs27-exec-path.patch'.
Note: This actually updates to 0.31~rc1, but here we instead use the version
number 0.30-0.31rc1 so that Guix will consider it older than version 0.31.
The rationale for updating to a release candidate is that earlier versions do
not work with Emacs 27.
* gnu/packages/mail.scm (notmuch): Update to 0.30-0.31rc1.
[source]: In the 'uri' field, avoid using the 'version' variable,
which doesn't match the upstream file name. Add a 'file-name' field
to work around the fact that Guix does not allow tildes ("~").
[arguments]: Add 'disable-failing-tests' phase.
* gnu/packages/gnupg.scm (gpgme): Update to 1.14.0.
[arguments]: Remove field, which included only a 'disable-failing-test' phase
that is no longer needed.
* gnu/packages/version-control.scm (git-lfs)[arguments]: Add phase
'man-gen to make usage text available for embedding for the 'build
phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Until now, when using the "fakechroot" engine, $LD_LIBRARY_PATH would
always be ignored. However, it's useful in some cases to allow users to
specify LD_LIBRARY_PATH, so honor it.
* gnu/packages/aux-files/run-in-namespace.c (concat_paths): New function.
(exec_with_loader): Concatenante $LD_LIBRARY_PATH to the relocated
AUDIT_LIBRARY_PATH.
This ensures notably that libnss_sss looks for the mmap cache files in
the right place, /var/lib/sss/mc, rather than in the store.
* gnu/packages/patches/sssd-system-directories.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/sssd.scm (sssd)[source]: Use it.
[arguments]: Pass "--localstatedir" and "--sysconfdir".
* gnu/packages/bioinformatics.scm (vcflib)[source]: Add patch. Add
snippet to adjust files for new locations.
[inputs]: Add fastahack, smithwaterman, tabixpp, xz.
[native-inputs]: Add pkg-config. Remove the package-source of fastahack,
fsom, smithwaterman, tabixpp.
[arguments]: Remove make-flags. Add custom phase to add the output lib
directory to the rpath. Adjust custom 'unpack-submodule-sources for the
change in native-inputs. Adjust custom 'install phase to also install
libraries and headers.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
