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Author SHA1 Message Date
Ricardo Wurmus
33dc54b08c
gnu: Move date/time packages from python.scm to time.scm. 
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
 2017-11-18 12:45:19 +01:00
Ricardo Wurmus
9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics). 
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
 2017-11-18 11:18:39 +01:00
Ricardo Wurmus
ac257f127a
gnu: Move testing packages from python.scm to check.scm. 
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
 2017-11-17 22:36:26 +01:00
Kyle Meyer
e99f045cc8
gnu: Add r-directlabels. 
* gnu/packages/statistics.scm (r-directlabels): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-09 23:54:48 +01:00
Ricardo Wurmus
2e648d2bc4
gnu: r-prabclus: Update description. 
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus
14e5f6b20a
gnu: r-fdrtool: Update description. 
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
 2017-11-07 08:15:44 +01:00
Ricardo Wurmus
65a8cd6676
gnu: r-lubridate: Update to 1.7.1. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus
689edf1153
gnu: r-preprocesscore: Update to 1.40.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus
e7f680f071
gnu: r-r-utils: Update to 2.6.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus
ecfe98a17a
gnu: r-openssl: Update to 0.9.8. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
 2017-11-07 08:15:40 +01:00
Ricardo Wurmus
aced057fbc
gnu: r-rlang: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
 2017-11-07 08:15:40 +01:00
Ricardo Wurmus
a6ec5b7043
gnu: r-withr: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
fd9afcf4ea
gnu: r-quantreg: Update to 5.34. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
1fe75660c0
gnu: r-robustbase: Update to 0.92-8. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
1fb415cb50
gnu: r-purrr: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
c8818f5577
gnu: r-irlba: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
116e9837b5
gnu: r-checkmate: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
fde66e3018
gnu: r-multitaper: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
0a123e0609
gnu: r-data-table: Update to 1.10.4-3. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
b5a2f37157
gnu: r-pryr: Update to 0.1.3 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
1f6f4c40c1
gnu: Add r-tgconfig. 
* gnu/packages/statistics.scm (r-tgconfig): New variable.
 2017-10-30 12:07:53 +01:00
Ricardo Wurmus
7941d1ed5d
gnu: Add r-tgstat. 
* gnu/packages/statistics.scm (r-tgstat): New variable.
 2017-10-30 12:07:51 +01:00
Efraim Flashner
8ba3f751b6
gnu: r-nloptr: Update package hash. 
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.

* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
 2017-10-26 10:46:02 +03:00
Kyle Meyer
4c77abc4da
gnu: Add r-forcats. 
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 16:24:03 +02:00
Tobias Geerinckx-Rice
5713bbf157
Use HTTPS for bioconductor.org. 
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
 2017-10-21 17:43:40 +02:00
Ricardo Wurmus
e059bdc9a7
gnu: r-tidyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
d8455fe146
gnu: r-tidyselect: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus
767ad2f7ad
gnu: r-chron: Update to 2.3-51. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus
dc6cb56dec
gnu: r-dplyr: Update to 0.7.4. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
 2017-10-17 20:58:23 +02:00
Roel Janssen
6de897ac5a
gnu: Add r-ggdendro. 
* gnu/packages/statistics.scm (r-ggdendro): New variable.
 2017-10-11 10:02:08 +02:00
Ricardo Wurmus
6048986c89
gnu: r-lme4: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus
26cd4194ef
gnu: r-doparallel: Update to 1.0.11. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus
7147d8f7ad
gnu: r-checkmate: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus
2c49184e2c
gnu: r-backports: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
 2017-09-28 22:00:43 +02:00
Ricardo Wurmus
1344deb937
gnu: r-minimal: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
 2017-09-28 20:21:18 +02:00
Ricardo Wurmus
91316f31d4
gnu: r-glmnet: Update to 2.0-13. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus
d9400ee46a
gnu: r-segmented: Update to 0.5-2.2. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus
29457c43bf
gnu: r-mgcv: Update to 1.8-22. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus
2c67f96b1b
gnu: r-glmnet: Update to 2.0-12. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus
0b2fc9836b
gnu: r-lambda-r: Update to 1.2. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus
9f14fffea6
gnu: r-gridextra: Update to 2.3. 
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus
37c6a738f3
gnu: r-dplyr: Update to 0.7.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus
b0c8cba485
gnu: r-crayon: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus
ea008095c3
gnu: r-svglite: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus
7904531e5b
gnu: r-mgcv: Update to 1.8-21. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus
d9c65e5a9c
gnu: r-caret: Update to 6.0-77. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
 2017-09-18 11:33:26 +02:00