Commit graph

88357 commits

Author SHA1 Message Date
Marius Bakke
b507cc49ab
gnu: python-pyvcf: Fix bytecode compilation.
* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Add phase to
patch sample script.
2021-12-05 14:02:10 +01:00
Marius Bakke
a2584a08be
gnu: python-whisper: Update to 1.1.8.
* gnu/packages/monitoring.scm (python-whisper): Update to 1.1.8.
2021-12-05 14:02:10 +01:00
Marius Bakke
0d196ab9bd
gnu: python-mailman-hyperkitty: Update to 1.2.0.
* gnu/packages/mail.scm (python-mailman-hyperkitty): Update to 1.2.0.
[source](patches): Remove.
2021-12-05 14:02:10 +01:00
Marius Bakke
3f9d122dcb
gnu: python-hyperkitty: Update to 1.3.5.
* gnu/packages/mail.scm (python-hyperkitty): Update to 1.3.5.
[arguments]: Add pythonpath in test invokation.
[propagated-inputs]: Add PYTHON-MISTUNE-NEXT.  Change from PYTHON-DJANGO-2.2
to PYTHON-DJANGO.
[native-inputs]: Add PYTHON-LXML.
2021-12-05 14:02:10 +01:00
Marius Bakke
b0ce8bdb39
gnu: Add python-mistune-next.
* gnu/packages/python-xyz.scm (python-mistune-next): New variable.
2021-12-05 14:02:09 +01:00
Marius Bakke
f457fb19dd
gnu: python-django-haystack: Update to 3.1.1.
* gnu/packages/django.scm (python-django-haystack): Update to 3.1.1.
[arguments]: Adjust substitution.
2021-12-05 14:02:09 +01:00
Marius Bakke
eb8619a5a6
gnu: python-alembic: Update to 1.7.5.
* gnu/packages/databases.scm (python-alembic): Update to 1.7.5.
[propagated-inputs]: Remove PYTHON-IMPORTLIB-RESOURCES.
2021-12-05 14:02:09 +01:00
Marius Bakke
d801827b84
gnu: ganeti: Add the output directory on GUIX_PYTHONPATH.
This is a follow-up to commit 1ed567c872.

* gnu/packages/virtualization.scm (ganeti)[arguments]: Adjust wrap phase to
include Ganetis own site-packages on $GUIX_PYTHONPATH.
2021-12-05 14:02:09 +01:00
Marius Bakke
846bd3d083
gnu: python-webassets: Patch for Python 3.9.
* gnu/packages/python-web.scm (python-webassets)[arguments]: Add
substitution.
2021-12-05 14:02:09 +01:00
Marius Bakke
9f5b9d18d8
gnu: python-django-mailman3: Update to 1.3.7.
* gnu/packages/mail.scm (python-django-mailman3): Update to 1.3.7.
2021-12-05 14:02:09 +01:00
Marius Bakke
837688e505
gnu: python-mailmanclient: Update to 3.3.3.
* gnu/packages/mail.scm (python-mailmanclient): Update to 3.3.3.
2021-12-05 14:02:09 +01:00
Marius Bakke
97edcf2e63
gnu: python-django-url-filter: Adjust phase order.
* gnu/packages/django.scm (python-django-url-filter)[arguments]: Move
substitution to after the unpack phase, so that it does not end up in the egg
info.
2021-12-05 14:02:09 +01:00
Marius Bakke
458e972484
gnu: python-django-netfields: Propagate psycopg2.
* gnu/packages/django.scm (python-django-netfields)[propagated-inputs]: Add
PYTHON-PSYCOPG2.
2021-12-05 14:02:09 +01:00
Marius Bakke
63975ea51c
gnu: python-django-logging-json: Disable sanity check.
* gnu/packages/django.scm (python-django-logging-json)[arguments]: Add
 #:phases.
2021-12-05 14:02:09 +01:00
Marius Bakke
19520996f0
gnu: python-django-appconf: Fix tests.
* gnu/packages/django.scm (python-django-appconf): Invoke django-admin with
custom pythonpath.
2021-12-05 14:02:09 +01:00
Marius Bakke
88e9e9e697
gnu: python-django-pipeline: Fix tests.
* gnu/packages/django.scm (python-django-pipeline): Provide pythonpath to
django-admin.
2021-12-05 14:02:09 +01:00
Marius Bakke
e73f565445
gnu: python-django-sortedm2m: Fix tests.
This is a follow-up to commit 283d5ac97f.

* gnu/packages/django.scm (python-django-sortedm2m): Invoke django-admin with
pythonpath and test settings.
2021-12-05 14:02:08 +01:00
Marius Bakke
ddea9e32e7
gnu: python-django-contact-form: Update to 1.9.
* gnu/packages/django.scm (python-django-contact-form): Update to 1.9.
2021-12-05 14:02:08 +01:00
Marius Bakke
6b458747da
gnu: python-django-jinja: Update to 2.9.1.
* gnu/packages/django.scm (python-django-jinja): Update to 2.9.1.
2021-12-05 14:02:08 +01:00
Marius Bakke
de5a8b26f2
gnu: python-django-haystack: Disable sanity check.
* gnu/packages/django.scm (python-django-haystack)[arguments]: Delete one
phase.  While at it, remove trailing #t's.
2021-12-05 14:02:08 +01:00
Marius Bakke
acbc01940b
gnu: python-fakeredis: Update to 1.7.0.
* gnu/packages/databases.scm (python-fakeredis): Update to 1.7.0.
2021-12-05 14:02:08 +01:00
Marius Bakke
0b6f4be0fa
gnu: Django packages propagate Django, after all.
This reverts commit d7922f488b.  Mainly to
placate the new 'sanity-check' phase, and because --with-input and friends
makes it easy to override.

* gnu/packages/django.scm (python-django-extensions,
python-django-simple-math-captcha, python-django-taggit,
python-easy-thumbnails, python-django-haystack, python-django-allauth,
python-django-debug-toolbar, python-django-debug-toolbar-alchemy,
python-django-assets, python-django-jinja, python-django-picklefield,
python-django-bulk-update, python-django-contact-form,
python-django-contrib-comments, python-django-pipeline, python-django-redis,
python-django-rq, python-django-q, python-django-sortedm2m,
python-django-appconf, python-django-statici18n, python-djangorestframework,
python-django-sekizai, python-django-crispy-forms,
python-django-override-storage, python-django-auth-ldap,
python-django-logging-json, python-django-netfields,
python-django-url-filter)[propagated-inputs]: Add PYTHON-DJANGO.
[native-inputs]: Remove it.
2021-12-05 14:02:08 +01:00
Vivien Kraus
f8490817e7
gnu: evolution: Build with libsoup 2.
* gnu/packages/gnome.scm (evolution) [phase adjust-webkitgtk-version]: Remove
it.
[inputs]: Depend on webkitgtk-with-libsoup2 instead of webkitgtk.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-05 08:42:03 +01:00
Ricardo Wurmus
7e6ee16d49
gnu: tla2tools: Remove reference to %output.
* gnu/packages/java.scm (tla2tools)[arguments]: Bind OUTPUTS in build phase
'install to remove reference to %output.
2021-12-05 01:11:38 +01:00
Ricardo Wurmus
ad1dc0cad3
gnu: java-log4j-core: Remove reference to %outputs.
* gnu/packages/java.scm (java-log4j-core)[arguments]: Remove reference to
%outputs by using a gexp.
2021-12-05 01:04:29 +01:00
Ricardo Wurmus
87e7ed77da
gnu: java-log4j-api: Remove reference to %outputs.
* gnu/packages/java.scm (java-log4j-api)[arguments]: Remove reference to
%outputs by using a gexp.
2021-12-05 01:04:03 +01:00
Ricardo Wurmus
9485578570
gnu: java-native-access: Use older GCC.
* gnu/packages/java.scm (java-native-access)[native-inputs]: Add gcc-7 to fix
the build.
2021-12-05 01:03:31 +01:00
Ricardo Wurmus
48235c37db
gnu: java-commons-math3: Remove trailing #T.
* gnu/packages/java.scm (java-commons-math3)[arguments]: Remove trailing #T
from build phase.
2021-12-05 00:49:06 +01:00
Ricardo Wurmus
1e7bd5e679
gnu: salmon: Remove reference to %build-inputs.
* gnu/packages/bioinformatics.scm (salmon)[arguments]: Use a gexp to remove
reference to %build-inputs.
2021-12-05 00:49:06 +01:00
Ludovic Courtès
3ee142ebd6
gnu: libhandy: Skip test that requires librsvg on non-x86_64.
* gnu/packages/gnome.scm (libhandy)[arguments]: Add
'skip-test-that-requires-svg' phase on non-x86_64.
2021-12-04 22:39:47 +01:00
Ludovic Courtès
73f78d556b
gnu: gtranslator: Update to 40.0.
* gnu/packages/gnome.scm (gtranslator): Update to 40.0.
[inputs]: Add LIBHANDY.
2021-12-04 22:39:46 +01:00
Ludovic Courtès
d4c4348d83
gnu: gtranslator: Fix compilation.
* gnu/packages/gnome.scm (gtranslator)[inputs]: Replace LIBSOUP with
LIBSOUP-MINIMAL-2.
[arguments]: Pass #:meson.
2021-12-04 22:39:46 +01:00
Ludovic Courtès
3f03f502ee
gnu: libgda: Do not use the bundled sqlite.
* gnu/packages/gnome.scm (libgda)[source]: Add snippet.
[arguments]: Pass "--enable-system-sqlite".
[inputs]: Add SQLITE.
2021-12-04 22:39:46 +01:00
Julien Lepiller
634b46a469
gnu: java-commons-math3: Remove references to %build-inputs.
* gnu/packages/java.scm (java-commons-math3)[arguments]: Use a gexp
to remove references to %build-inputs.
2021-12-04 22:07:26 +01:00
Julien Lepiller
ba5cb6456d
gnu: java-commons-collections4: Remove references to %build-inputs.
* gnu/packages/java.scm (java-commons-collections4)[arguments]: Use a gexp
to remove references to %build-inputs.
2021-12-04 22:07:17 +01:00
Julien Lepiller
035fec27fc
gnu: java-commons-exec-1.1: Remove references to %build-inputs.
* gnu/packages/java.scm (java-commons-exec-1.1)[arguments]: Use a gexp
to remove references to %build-inputs.
2021-12-04 22:07:11 +01:00
Julien Lepiller
5a4ad372ef
gnu: java-commons-exec: Remove references to %build-inputs.
* gnu/packages/java.scm (java-commons-exec)[arguments]: Use a gexp to
remove references to %build-inputs.
2021-12-04 22:06:49 +01:00
Julien Lepiller
2aee138485
gnu: maven-components-parent-pom-22: Remove references to %build-inputs.
* gnu/packages/maven-parent-pom.scm (maven-components-parent-pom-22)
[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04 22:06:41 +01:00
Julien Lepiller
d29f14aca2
gnu: java-sonatype-oss-parent-pom-9: Remove references to %build-inputs.
* gnu/packages/maven-parent-pom.scm (java-sonatype-oss-parent-pom-9)
[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04 22:06:23 +01:00
Ricardo Wurmus
98d2abe523
gnu: sailfish: Remove references to %build-inputs.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use a gexp to remove
references to %build-inputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
39e2a84f52
gnu: sailfish: Simplify snippet.
* gnu/packages/bioinformatics.scm (sailfish)[source]: Remove trailing #T from
snippet.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
b0fd09f856
gnu: piranha: Remove references to %build-inputs.
* gnu/packages/bioinformatics.scm (piranha)[arguments]: Use gexp to remove
references to %build-inputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
01d2e2b334
gnu: piranha: Remove trailing #T.
* gnu/packages/bioinformatics.scm (piranha)[arguments]: Remove trailing #T
from build phases.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
502538c6e4
gnu: emboss: Remove reference to %build-inputs.
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use gexp to remove
reference to %build-inputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
2657bdc100
gnu: vcftools: Replace references to %outputs.
* gnu/packages/bioinformatics.scm (vcftools)[arguments]: Use gexp to remove
references to %outputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
eec1bdcd9e
gnu: seqan-1: Use gexp for builder.
* gnu/packages/bioinformatics.scm (seqan-1)[arguments]: Use a gexp to remove
references to %build-inputs and %outputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
2c1c75a56c
gnu: seqan-2: Use gexp for builder.
* gnu/packages/bioinformatics.scm (seqan-2)[arguments]: Use a gexp to remove
references to %build-inputs and %outputs.
2021-12-04 19:54:28 +01:00
Ricardo Wurmus
f41576c09f
gnu: sra-tools: Remove references to %build-inputs.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use a gexp instead
of referencing %build-inputs.
2021-12-04 19:54:27 +01:00
Ricardo Wurmus
f33e490334
gnu: preseq: Remove references to %outputs and %build-inputs.
* gnu/packages/bioinformatics.scm (preseq)[arguments]: Replace references to
%outputs and %build-inputs by using a gexp.
2021-12-04 19:54:27 +01:00
Ricardo Wurmus
8a446f5e41
gnu: preseq: Simplify snippet.
* gnu/packages/bioinformatics.scm (preseq)[source]: Simplify snippet.
2021-12-04 19:54:27 +01:00