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Author SHA1 Message Date
Ludovic Courtès
72a5cc5358
gnu: automake: Add version 1.16.2. 
* gnu/packages/autotools.scm (automake-1.16.2): New variable.
 2020-03-24 18:03:18 +01:00
Ludovic Courtès
53c594cb3f
pack: Do not store extended attributes in squashfs images. 
* guix/scripts/pack.scm (squashfs-image)[build](mksquashfs): Pass "-no-xattrs".
 2020-03-24 16:56:19 +01:00
Ludovic Courtès
8465f1f680
ui: 'show-manifest-transaction' tabulates package lists for install/remove. 
It also removes the store file name from the output.

* guix/ui.scm (show-manifest-transaction)[package-strings]: Rewrite to
use 'tabulate'.  Remove 'item' parameter and adjust callers.
 2020-03-24 15:44:45 +01:00
Ludovic Courtès
3e5ab0a7a9
ui: 'show-manifest-transaction' tabulates upgraded package lists. 
This also changes "1.0.0 → 1.0.0" to "(dependencies changed)", which is
probably less confusing.

* guix/ui.scm (tabulate): New procedure.
(show-manifest-transaction)[upgrade-string]: Rewrite to take lists of
names, versions, and outputs instead of single elements.  Use
'tabulate'.  Adjust callers accordingly.
 2020-03-24 15:44:45 +01:00
Martin Becze
cf2b91aad0
import: crate: Deduplicate dependencies. 
* guix/import/crate.scm (crate-version-dependencies): Deduplicate crate dependencies.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-24 15:44:45 +01:00
Martin Becze
b488b64a3e
gnu: Add guile3.0-semver. 
* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-24 15:44:45 +01:00
Efraim Flashner
08d5341b1f
gnu: nano: Update to 4.9. 
* gnu/packages/nano.scm (nano): Update to 4.9.
 2020-03-24 15:47:58 +02:00
Naga Malleswari
54a9fe3429
doc: Fix typo in example. 
* doc/guix.texi (Base Services)[file->udev-rule]: Correct misspelt
"user-account".

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-03-24 13:10:43 +01:00
Naga Malleswari
022767d7c1
doc: Fix typo. 
* doc/guix.texi (Invoking guix time-machine): Fix typo.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-03-24 13:07:17 +01:00
Guillaume Le Vaillant
151f3d416c
gnu: Add qgis. 
* gnu/packages/geo.scm (qgis): New variable.

Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-03-24 11:42:41 +01:00
Arun Isaac
d13d28265f
licenses: Add QWT 1.0 license. 
* guix/licenses.scm (qwt1.0): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2020-03-24 11:42:41 +01:00
Arun Isaac
5d33e789c2
licenses: Add Open Government Licence for Public Sector Information. 
* guix/licenses.scm (ogl-psi1.0): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant
f7ac2fe1ce
gnu: Add saga. 
* gnu/packages/geo.scm (saga): New variable.
 2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant
9fce591479
gnu: Add grass. 
* gnu/packages/geo.scm (grass): New variable.
 2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant
efcb05083f
gnu: Add python-owslib. 
* gnu/packages/python-xyz.scm (python-owslib): New variable.
 2020-03-24 11:42:40 +01:00
Ricardo Wurmus
b0d1da986b
gnu: r-harmony: Update to 0.1. 
* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
8ff6386491
gnu: r-shiny: Update to 1.4.0.2. 
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
1f2f01aed5
gnu: r-bigpint: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
4bcb38c801
gnu: r-biosigner: Update to 1.14.4. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
d5951dc43a
gnu: r-gosemsim: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:01 +01:00
Ricardo Wurmus
c649d31957
gnu: r-tximport: Update to 1.14.2. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
c10bef9bd3
gnu: r-caret: Update to 6.0-86. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
1e40a27465
gnu: r-batchtools: Update to 0.9.13. 
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
6005efa40f
gnu: r-mcmc: Update to 0.9-7. 
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d3836473de
gnu: r-proc: Update to 1.16.2. 
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
2f445f0da3
gnu: r-radiant-data: Update to 1.3.4. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
ff248f41cb
gnu: r-patchwork: Update to 1.0.0. 
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
f7a21df523
gnu: r-robustbase: Update to 0.93-6. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
7e349066e6
gnu: r-hmisc: Update to 4.4-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
 2020-03-24 11:06:00 +01:00
Ricardo Wurmus
d16a4d1f96
gnu: r-dt: Update to 0.13. 
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
 2020-03-24 11:05:59 +01:00
Ricardo Wurmus
f871696911
gnu: r-locfit: Update to 1.5-9.2. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
 2020-03-24 11:05:59 +01:00
Ricardo Wurmus
e0d6a7da74
gnu: Add r-randomizr. 
* gnu/packages/cran.scm (r-randomizr): New variable.
 2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant
47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb. 
* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
  option in the build phase.
 2020-03-24 09:31:43 +01:00
Michael Rohleder
0f96fd6454
gnu: dialog: Update to 1.3-20200228. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-23 21:17:55 -04:00
Leo Famulari
aae5f89db0
gnu: Git: Update to 2.26.0. 
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
 2020-03-23 21:17:46 -04:00
Mathieu Othacehe
acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input." 
This reverts commit 4233e74b39.
 2020-03-23 21:51:25 +01:00
Leo Famulari
a11237e40a
gnu: Mutt: Update to 1.13.4. 
* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
 2020-03-23 15:53:11 -04:00
Alexandros Theodotou
0a6f68982b
gnu: sord: Add pcre to inputs. 
* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
 2020-03-23 20:48:49 +01:00
Brice Waegeneire
7884fc434f
gnu: youtube-dl: Add zsh completion. 
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
install-completion.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 19:02:46 +01:00
Brice Waegeneire
4233e74b39
gnu: youtube-dl: Add 'ffmpeg' as input. 
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
wrap-executable.
[inputs]: Add ffmpeg.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 19:02:44 +01:00
Brice Waegeneire
1a5443e86b
doc: Fix typo in example. 
* doc/guix.texi (Invoking guix deploy): Fix example to use '%user'
variable defined above.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 18:57:01 +01:00
Brice Waegeneire
a9f2c210f3
system: Export 'operating-system-kernel-loadable-modules'. 
* gnu/system.scm: Export 'operating-system-kernel-loadable-modules'.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-03-23 18:52:31 +01:00
Maxim Cournoyer
f2c698bd3e
gnu: emacs-lua-mode: Update to 20191204. 
* (emacs-lua-mode): Update to 20191204.
 2020-03-23 13:49:39 -04:00
Maxim Cournoyer
09c09c4c7c
gnu: emacs-ert-runner: Update to 0.8.0. 
* (emacs-ert-runner): Update to 0.8.0.
 2020-03-23 13:49:38 -04:00
Maxim Cournoyer
80168c4b5b
gnu: emacs-dash: Update to 2.17.0. 
* (emacs-dash): Update to 2.17.0.
 2020-03-23 13:49:38 -04:00
Mathieu Othacehe
f9b6f75d1c
installer: Fix cow-store umount issue. 
* gnu/installer/final.scm (kill-cow-users): Ignore exception that could be
raised if a process disappears between reading its pid and its maps file.
 2020-03-23 18:46:40 +01:00