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Author SHA1 Message Date
Ricardo Wurmus
bd94b6f850
gnu: java-htsjdk: Update to 2.3.0. 
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus
9e325e8c05
gnu: Add java-commons-jexl-2. 
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus
6688c41e16
gnu: Add javacc-4. 
* gnu/packages/java.scm (javacc-4): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus
fc8d100b24
gnu: Add javacc. 
* gnu/packages/java.scm (javacc): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus
933ad809f1
gnu: Add java-snappy-1. 
* gnu/packages/compression.scm (java-snappy-1): New variable.
 2017-11-27 12:12:39 +01:00
Ricardo Wurmus
9cc51d16cb
gnu: librecad: Ensure that icons are found at runtime. 
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"wrap-executable".
 2017-11-27 12:11:58 +01:00
Ricardo Wurmus
35e78aaa25
gnu: r-rhdf5: Fix build phase. 
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
 2017-11-27 12:11:52 +01:00
Leo Famulari
9071581bf5
gnu: shotwell: Update to 0.27.1. 
* gnu/packages/gnome.scm (shotwell): Update to 0.27.1.
 2017-11-26 19:34:43 -05:00
ng0
9221979e36
Update e-mail for ng0. 
* .mailmap: Update entries for ng0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-26 18:21:19 -05:00
ng0
f953aa56cc
gnu: fish-guix: Use new URL. 
* gnu/packages/shells.scm (fish-guix)[source]: Use new URL.
(home-page): Use new URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-26 18:21:19 -05:00
ng0
66e47916d4
gnu: python-pycanberra: Switch to new download URL. 
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-26 18:21:19 -05:00
nee
6438a4682d
gnu: crawl: Update to 0.20.1. 
* gnu/packages/games.scm (crawl): Update to 0.20.1.
(crawl-tiles): Update to 0.20.1.
[native-inputs]: Add pngcrush.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-26 17:52:24 -05:00
Efraim Flashner
6dbad376a2
gnu: openntpd: Update to 6.2p3. 
* gnu/packages/ntp.scm (openntpd): Update to 6.2p3.
 2017-11-26 22:33:18 +02:00
Leo Famulari
5b327a2d61
gnu: exim: Fix CVE-2017-16943. 
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
 2017-11-26 15:31:46 -05:00
nee
1ee13e01c8
gnu: image: Rename pngcrunch to pngcrush and update it. 
* gnu/packages/image.scm (pngcrush): Renamed from pngcrunch.
[version]: update to 1.8.13.
[arguments]: Use the nolib Makefile.
[origin]: Use the no-lib tar.
[home-page]: update to the new website.
(pngcrunch): New deprecation variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-26 17:36:26 +01:00
Ludovic Courtès
9b07130129
list-runtime-roots: Ignore ESRCH while reading from /proc. 
Fixes <https://bugs.gnu.org/29368>.
Reported by Martin Castillo <castilma@uni-bremen.de>.

* nix/scripts/list-runtime-roots.in (referenced-files): Ignore ESRCH.
 2017-11-26 15:58:33 +01:00
Clément Lassieur
5c22f3726e
tests: messaging: Enable Prosody DIGEST-MD5 auth mechanism. 
GNU Freetalk doesn't support SCRAM-SHA-1.

* gnu/tests/messaging.scm (%test-prosody): Override default
disable-sasl-mechanisms value.
 2017-11-26 15:32:16 +01:00
Clément Lassieur
e30038dae1
services: prosody: Add support for disable-sasl-mechanisms. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[disable-sasl-mechanisms]:
New field.
 2017-11-26 15:30:57 +01:00
Clément Lassieur
274b9500d1
services: prosody: Allow to add raw content to the config file. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[raw-content]: New field.
(raw-content?, serialize-raw-content): New procedures.
 2017-11-26 15:30:57 +01:00
Clément Lassieur
1f6f1a07c8
services: prosody: Add support for http-max-content-size. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[http-max-content-size]:
New field.
 2017-11-26 15:30:57 +01:00
Clément Lassieur
f59de6bea9
services: prosody: Add support for http-external-url. 
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[http-external-url]: New
field.
 2017-11-26 15:30:56 +01:00
Clément Lassieur
5cc6dcd734
services: prosody: Adapt to Prosody 0.10.0. 
* doc/guix.texi (Messaging Services): Add "mam" as a module example.  Document
'prosodyctl check'.  Replace 'prosodyctl cert request' with 'prosodyctl cert
import'.  Regenerate it.
* gnu/services/messaging.scm (serialize-module-list): Remove "posix" from the
default modules list because it is now automatically loaded.
(ssl-configuration)[key, certificate]: Remove them because they are now
automatically located.  Fix their docstrings.
(%default-modules-enabled): Add "carbons" and "blocklist".
(prosody-configuration)[certificates]: Set default directory from which
certificates/keys will be automatically located.
 2017-11-26 15:30:56 +01:00
Clément Lassieur
3ba501083d
gnu: prosody: Add lua5.1-bitop to inputs. 
It is required for mod_websocket on Lua 5.1 since Prosody 0.10.

* gnu/packages/messaging.scm (prosody)[inputs]: Add lua5.1-bitop.
 2017-11-26 15:30:56 +01:00
Clément Lassieur
cb31a52407
gnu: Add lua5.1-bitop. 
* gnu/packages/lua.scm (make-lua-bitop): New procedure.
(lua5.2-bitop): Call make-lua-bitop.
(lua5.1-bitop): New variable.
 2017-11-26 15:30:56 +01:00
Rutger Helling
93bfc9693a
gnu: prosody: Update to 0.10.0. 
* gnu/packages/messaging.scm (prosody): Update to 0.10.0.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2017-11-26 15:30:56 +01:00
Mathieu Othacehe
b8e7781122
vm: Use os-defined initrd intead of base-initrd. 
* gnu/system/vm.scm (system-disk-image, system-qemu-image,
  virtualized-operating-system): Replace base-initrd by
  (operating-system-initrd os).

The system produced were always using base-initrd even if the user had
defined a custom initrd based on raw-initrd in the os declaration.
 2017-11-26 13:50:37 +01:00
Rutger Helling
64047c850f
gnu: qtox: Update to 1.13.0. 
* gnu/packages/messaging.scm (qtox): Update to 1.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-11-26 20:25:17 +08:00
Rutger Helling
a0bd6fff42
gnu: tidy-html: Update to 5.6.0. 
* gnu/packages/web.scm (tidy-html): Update to 5.6.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-11-26 20:17:55 +08:00
Efraim Flashner
51b0f09e05
gnu: mongodb: Remove some bundled sources. 
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove
some of the bundled sources.
[input]: Remove unused boost input.
 2017-11-26 14:16:08 +02:00
Efraim Flashner
319b52c382
gnu: mongodb: Use system wiredtiger when available. 
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on
64-bit systems.
[arguments]: When using wiredtiger, use system wiredtiger.
 2017-11-26 14:16:08 +02:00
Efraim Flashner
29cfbfca43
gnu: mongodb: Build without wiredtiger on 32-bit systems. 
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag
to build without wiredtiger support on 32-bit systems.
 2017-11-26 14:16:04 +02:00
Leo Famulari
f1c49e75f4
gnu: mongodb: Update to 3.4.10. 
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
 2017-11-25 20:28:11 -05:00
Kei Kebreau
2af6be91d5
gnu: diffoscope: Fix error messages related to comparison tools. 
* gnu/packages/package-management.scm (diffoscope)[arguments]: Replace readelf
substitution and add stat and getfacl substitutions.
[inputs]: Add acl.

Errors fixed include the following:
  "FileNotFoundError: [Errno 2] No such file or directory: 'readelf'"
  "diffoscope.comparators.directory: Unable to find 'getfacl', some directory
   metadata differences might not be noticed."
  "diffoscope.comparators.directory: Unable to find 'stat'"
 2017-11-25 16:13:37 -05:00
Efraim Flashner
5ea35b42e4
gnu: qtsensors: Disable parallel tests. 
* gnu/packages/qt.scm (qtsensors)[arguments]: Disable parallel tests.
 2017-11-25 22:16:34 +02:00
Jan Nieuwenhuizen
68cb962a8d
gnu: guile-emacs: Resurrect, fixes #29186. 
* gnu/packages/patches/guile-emacs-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (guile-emacs): Use it.  Add workaround for src/deps
dir creation.  Fixes #29186.
 2017-11-25 20:05:26 +01:00
Efraim Flashner
7989ba2af2
gnu: enlightenment: Update to 0.22.1. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.1.
 2017-11-25 20:08:34 +02:00
Efraim Flashner
33b02e07fa
gnu: efl: Update to 1.20.6. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.6.
 2017-11-25 20:08:31 +02:00
Ludovic Courtès
4aac8d059a
syscalls: Adjust utmpx test. 
Fixes <https://bugs.gnu.org/29426>.
Reported by Adonay Felipe Nogueira <adfeno@hyperbola.info>.

* tests/syscalls.scm ("utmpx-entries"): Check the value
of (utmpx-entries entry) only for INIT_PROCESS, LOGIN_PROCESS, and
USER_PROCESS entries.
 2017-11-25 18:12:33 +01:00
Leo Famulari
1e0ea1d8df
gnu: utox: Make CHECK a native-input. 
This is a followup to commit 907ab9e8cb.

* gnu/packages/messaging.scm (utox)[inputs]: Move CHECK ...
[native-inputs]: ... here.
 2017-11-25 10:48:06 -05:00
Mark H Weaver
a93ac4cbdf
gnu: linux-libre: Update to 4.14.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.2.
(%linux-libre-hash): Update hash.
 2017-11-25 02:46:04 -05:00
Mark H Weaver
b2785c54f7
gnu: linux-libre@4.9: Update to 4.9.65. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.65.
 2017-11-25 02:45:12 -05:00
Mark H Weaver
749164cb71
gnu: linux-libre@4.4: Update to 4.4.102. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.102.
 2017-11-25 02:44:17 -05:00
Alex Sassmannshausen
e9291eaa42
gnu: Add guile-dsv. 
* gnu/packages/guile.scm (guile-dsv): New variable.
 2017-11-25 00:26:20 +01:00
Christopher Baines
ea3b9f7b73
gnu: mail: Remove python-django-mailman3. 
This package fails to build, as django-mailman3 currently only works with
Python 2.

* gnu/packages/mail.scm (python-django-mailman3): Removed variable.
  (python2-django-mailman3): Inline the use of python-django-mailman3, and
  remove the use of package-with-python2.
 2017-11-24 22:16:39 +00:00
Christopher Baines
17dc2a0997
gnu: django: Fix building python-django-allauth. 
* gnu/packages/django.scm (python-django-allauth)[arguments]: Modify the
  standard phases to skip a test, and run the tests using django-admin with
  the settings configured.
 2017-11-24 22:16:33 +00:00
Oleg Pykhalov
7a45268935
gnu: Add emacs-highlight-stages. 
* gnu/packages/emacs.scm (emacs-highlight-stages): New variable.
* gnu/packages/patches/emacs-highlight-stages-add-gexp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
 2017-11-25 00:18:45 +03:00
Alex Vong
8cc1fce1ba
gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.2. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2017-11-24 21:12:23 +01:00
Alex Vong
abe5347dd6
gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.2. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2017-11-24 21:12:20 +01:00
Alex Vong
7cee3cb2c4
gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.2. 
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2017-11-24 21:12:17 +01:00
Alex Vong
37cf0712da
gnu: java-fasterxml-jackson-databind: Update to 2.9.2. 
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2017-11-24 21:12:14 +01:00