Commit graph

79551 commits

Author SHA1 Message Date
Ricardo Wurmus
473371dfc1
gnu: r-zlibbioc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
092d2a8d85
gnu: r-xvector: Update to 0.32.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
e4a34df239
gnu: r-vsn: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
2817a8f292
gnu: r-tximport: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
ad6ba3de65
gnu: r-topgo: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
7728c5909f
gnu: r-systempiper: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
81c55df9a8
gnu: r-sva: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
8e0dac09c4
gnu: r-slingshot: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
15f371cc89
gnu: r-shortread: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
76edc5ae98
gnu: r-seqpattern: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
58ae27d46c
gnu: r-seqlogo: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
5ce21e7153
gnu: r-rtracklayer: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
e22d743aa6
gnu: r-rsamtools: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
f2f4ca7456
gnu: r-rhdf5filters: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
51bee5c40f
gnu: r-reportingtools: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
2da4ee4c77
gnu: r-regioner: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
38fa99c1d0
gnu: r-rcas: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
7c45bc9391
gnu: r-rbgl: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
dc67525ae6
gnu: r-protgenerics: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
00b2174930
gnu: r-mzid: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
d647eb090b
gnu: r-msnbase: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0.
[propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
c966cef2b4
gnu: r-mutationalpatterns: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
0b3fd7e89a
gnu: r-methylkit: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
595b75e05c
gnu: r-limma: Update to 3.48.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
60b598ee16
gnu: r-keggrest: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
2cbb8e19af
gnu: r-interactivedisplaybase: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
94b4e64fd0
gnu: r-impute: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
76fc8a53b2
gnu: r-rhtslib: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
78eb1fdf3e
gnu: r-hpar: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
330a7fe3b1
gnu: r-gseabase: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.54.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
214e784b57
gnu: r-gostats: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
1b44202e20
gnu: r-genomicranges: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
d491b7eb1a
gnu: r-genomicfiles: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
62889b9915
gnu: r-genomicfeatures: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0.
[propagated-inputs]: Add r-biocio.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
570e80d62f
gnu: r-genomicalignments: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
f88ab81fc7
gnu: r-genomeinfodb: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
ef7bbc40de
gnu: r-genomation: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0.
[propagated-inputs]: Remove r-runit.
2021-06-05 09:12:43 +02:00
Ricardo Wurmus
3c024e9e96
gnu: r-geneoverlap: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
389ce4e42b
gnu: r-genefilter: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
f22f4caa69
gnu: r-gage: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
ff59b34dc3
gnu: r-fastseg: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.38.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
6abbb53c3e
gnu: r-ensembldb: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
bdc1b908d3
gnu: r-edger: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
f998c95d60
gnu: r-edaseq: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.0.
2021-06-05 09:12:42 +02:00
Ricardo Wurmus
30ce1f9b66
gnu: r-dirichletmultinomial: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.34.0.
2021-06-05 09:12:42 +02:00