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53 commits

Author SHA1 Message Date
Ludovic Courtès
01497dfe6c
Merge branch 'master' into core-updates 2016-06-27 09:30:01 +02:00
Ricardo Wurmus
2d15f60126
gnu: java-swt: Use 64-bit archive on x86_64. 
* gnu/packages/java.scm (java-swt)[source]: Use separate source archive
for x86_64.
 2016-06-07 12:35:51 +02:00
Leo Famulari
1c6303fae0
gnu: icedtea: Update to 1.13.11. 
Fixes CVE-2016-{0686, 0687, 0695, 3425, 3427}.

* gnu/packages/patches/icedtea-remove-overrides.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (icedtea): Update to 1.13.11.
[source]: Use the patch.
[inputs]: Add libxcomposite.
 2016-06-01 02:29:01 -04:00
Ricardo Wurmus
8226c2717c gnu:: java-swt: Use ant-build-system. 
* gnu/packages/java.scm (java-swt): Use ant-build-system.
[native-inputs]: Remove JDK.
 2016-05-16 16:17:18 +02:00
Ludovic Courtès
b13cf17fcf
gnu: java-qdox: Escape "@" in description. 
* gnu/packages/java.scm (java-qdox-1.12)[description]: Use "@@tag", not
"@tag".
 2016-05-04 23:35:55 +02:00
Ricardo Wurmus
d0184f44d3 gnu: Add java-junit. 
* gnu/packages/java.scm (java-junit): New variable.
 2016-05-02 17:35:51 +02:00
Ricardo Wurmus
87c31a21a5 gnu: Add java-hamcrest-core. 
* gnu/packages/java.scm (java-hamcrest-core): New variable.
 2016-05-02 17:35:51 +02:00
Ricardo Wurmus
e7e28510bb gnu: Add java-jarjar. 
* gnu/packages/java.scm (java-jarjar): New variable.
 2016-05-02 17:35:50 +02:00
Ricardo Wurmus
04100c3bbb gnu: Add java-qdox-1.12. 
* gnu/packages/java.scm (java-qdox-1.12): New variable.
 2016-05-02 17:35:50 +02:00
Roel Janssen
068e476f68 gnu: Add java-xz. 
* gnu/packages/java.scm (java-xz): New variable.
 2016-04-27 10:52:34 +02:00
Leo Famulari
8e740bca65
gnu: icedtea-8: Update to 3.0.1. 
Fixes CVE-2016-0686, CVE-2016-0687, CVE-2016-0695, CVE-2016-3425,
CVE-2016-3426, CVE-2016-3427.

* gnu/packages/java.scm (icedtea-8): Update to 3.0.1.
 2016-04-27 01:43:08 -04:00
Leo Famulari
0a0b5ebed2
gnu: icedtea-7: Update to 2.6.6. 
Fixes CVE-2016-0686, CVE-2016-0687, CVE-2016-0695, CVE-2016-3425, CVE-2016-3427.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.6.
 2016-04-27 00:15:33 -04:00
Ricardo Wurmus
2729509003 gnu: java-swt: Update to 4.5. 
* gnu/packages/java.scm (java-swt): Update to 4.5.
 2016-04-26 21:27:15 +02:00
Hartmut Goebel
1ad15c1669 gnu: Rename Java packages to match new naming specification. 
* gnu/packages/bioinformatics.scm (htsjdk): Rename to...
(java-htsjdk): ...this.
(ngs-java): Rename to...
(java-ngs): ...this.
(ncbi-vdb)[arguments,inputs]: Use new name.
* gnu/packages/java.scm (swt): Rename to...
(java-swt): ...this.
* gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use
new name of package "swt".
 2016-04-19 16:55:03 +02:00
Ricardo Wurmus
349a314765 gnu: Add icedtea-8. 
* gnu/packages/java.scm (icedtea-8): New variable.
 2016-04-19 14:44:29 +02:00
Ricardo Wurmus
b711df02fd gnu: icedtea-7: Update to 2.6.5. 
* gnu/packages/java.scm (icedtea-7): Update to 2.6.5.
[inputs]: Add libxcomposite.
 2016-04-17 11:15:53 +02:00
Ricardo Wurmus
535e2a2fee gnu: ant: Update source URL. 
* gnu/packages/java.scm (ant)[source]: Use Apache mirror instead of
  plain URL.
 2016-03-14 12:36:49 +01:00
Leo Famulari
03675cad53 gnu: icedtea-7: Update to 2.6.4. 
Fixes CVE-2015-{7575, 8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483,
0494}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.4.
 2016-01-28 08:48:35 -05:00
Leo Famulari
559239af7a gnu: icedtea-6: Update to 1.13.10. 
Fixes CVE-2015-{8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483, 0494}.

* gnu/packages/java.scm (icedtea-6): Update to 1.13.10.
 2016-01-28 08:48:35 -05:00
Ricardo Wurmus
9f40b1171b gnu: icedtea-6: Fix directory name in "unpack" phase. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
  prefix in the "unpack" phase to "icedtea6-".
 2016-01-12 11:39:21 +01:00
Ricardo Wurmus
a243e12aba gnu: icedtea7: Rename to icedtea-7. 
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus
d028740622 gnu: icedtea6: Rename to icedtea-6. 
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus
5452588c1a gnu: icedtea6, icedtea7: Rename package to "icedtea". 
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus
d2540f80c2 gnu: Add and use default IcedTea. 
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus
d91488908b gnu: icedtea6, icedtea7: Unpack to "openjdk.src". 
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus
4de7aede50 gnu: icedtea7: Update to 2.6.3. 
* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
 2015-12-23 14:57:58 +01:00
Ricardo Wurmus
e7173df87a gnu: icedtea6: Update to 1.13.9. 
* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
 2015-12-23 14:57:58 +01:00
Ricardo Wurmus
dffdef0f0f gnu: ant: Update to 1.9.6. 
* gnu/packages/java.scm (ant): Update to 1.9.6.
 2015-11-20 11:32:32 +01:00
Ricardo Wurmus
8a3a9e84cb gnu: icedtea7: Update to 2.6.2. 
* gnu/packages/java.scm (icedtea7): Update to 2.6.2.
 2015-10-29 14:53:19 +01:00
Ricardo Wurmus
331a1cd727 gnu: icedtea6: Update to 1.13.8. 
* gnu/packages/java.scm (icedtea6): Update to 1.13.8.
 2015-10-13 13:45:51 +02:00
Ricardo Wurmus
d4bf4c8f3e gnu: icedtea6: Replace "ant-bootstrap" with "ant". 
* gnu/packages/java.scm (icedtea6)[native-inputs]: Replace
  "ant-bootstrap" with "ant".
  [arguments]: Remove steps to unpack and use "ant-bootstrap".
  (icedtea7)[native-inputs]: Remove explicit references to
  "ant-bootstrap" and "ant".
 2015-10-13 13:45:51 +02:00
Ricardo Wurmus
60eb5614d1 gnu: ant: Build with GCJ. 
* gnu/packages/java.scm (ant)[native-inputs]: Replace "icedtea6" with
  "gcj".
 2015-10-13 13:45:51 +02:00
Ricardo Wurmus
397dbde8ff gnu: gcj-4.8, gcj: Update to default GCC version. 
* gnu/packages/gcc.scm (gcj-4.8): Inherit from "gcc" package and rename
  variable to...
  (gcj): ...this new variable.
  (ecj-bootstrap-4.8): Rename variable to...
  (ecj-bootstrap): ...this, updating to version 4.9.
* gnu/packages/java.scm (icedtea6)[native-inputs]: Replace "gcj-4.8"
  with "gcj".
* gnu/packages/music.scm (tuxguitar)[native-inputs]: Likewise.
 2015-10-13 13:45:51 +02:00
Ludovic Courtès
96c4621056 gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases. 
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
  plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
  Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
 2015-08-29 01:25:08 +02:00
Ricardo Wurmus
6d7a0eeded gnu: icedtea7: Update to 2.6.1. 
* gnu/packages/java.scm (icedtea7): Update to 2.6.1.
 2015-07-27 10:29:43 +02:00
Ricardo Wurmus
47da6268c4 gnu: icedtea7: Bootstrap with GCJ. 
* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
  with IcedTea6.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
4cbaf2ab65 gnu: icedtea6: Add target-dependent include directory to CPATH. 
* gnu/packages/java.scm (gcj-4.8)[arguments]: Add target-dependent GCJ include
  directory to CPATH environment variable.
 2015-05-12 13:59:17 +02:00
Ricardo Wurmus
f67890477a gnu: Add icedtea7. 
* gnu/packages/java.scm (icedtea7): New variable.
 2015-04-28 12:08:08 +02:00
Ricardo Wurmus
47c8ba5a51 gnu: icedtea6: Split test fixing phases. 
* gnu/packages/java.scm (icedtea6)[arguments]: Split phase 'fix-tests into
  three phases 'fix-test-framework, 'fix-hotspot-tests, and 'fix-jdk-tests.
 2015-04-27 15:13:35 +02:00
Ricardo Wurmus
8581c81307 gnu: Add SWT. 
* gnu/packages/java.scm (swt): New variable.
 2015-04-21 21:51:38 +02:00
Mark H Weaver
933204e5b1 Merge branch 'master' into core-updates 
Conflicts:
	gnu-system.am
	gnu/packages/gstreamer.scm
 2015-04-17 09:54:11 -04:00
Ricardo Wurmus
e46d517f6d gnu: icedtea6: Update to 1.13.7. 
* gnu/packages/java.scm (icedtea6): Update to version 1.13.7.
 2015-04-15 17:38:09 +02:00
Ludovic Courtès
fb799cb72e gnu: Disable RUNPATH validation for packages that use $ORIGIN. 
* gnu/packages/haskell.scm (ghc)[arguments]: Add #:validate-runpath?.
* gnu/packages/julia.scm (julia)[arguments]: Likewise.
* gnu/packages/java.scm (icedtea6)[arguments]: Likewise.
 2015-04-14 10:03:24 +02:00
Ricardo Wurmus
6b2bad40fc gnu: icedtea6: remove commented substitution. 
* gnu/packages/java.scm (icedtea6): Remove commented substitution.
 2015-03-23 10:17:36 +01:00
Ricardo Wurmus
18f3c3209d gnu: icedtea6: Do not set CC and LD_LIBRARY_PATH. 
* gnu/packages/java.scm (icedtea6)[arguments]: Do not set CC and
  LD_LIBRARY_PATH variables.
 2015-03-23 10:17:36 +01:00
Ricardo Wurmus
3893c80a88 gnu: icedtea6: Rename ‘set-paths’ phase to ‘set-additional-paths’ 
* gnu/packages/java.scm (icedtea6)[arguments]: Rename ‘set-paths’ phase to
  ‘set-additional-paths’.
 2015-03-23 10:17:36 +01:00
Ricardo Wurmus
4d80586aa5 gnu: icedtea6: patch patches in separate build phase. 
* gnu/packages/java.scm (icedtea6)[arguments]: Move patching of patches from
  ‘patch-paths’ to new ‘patch-patches’ phase.
 2015-03-23 10:17:36 +01:00
Ricardo Wurmus
6f27f3775e gnu: icedtea6: patch hardcoded objcopy path. 
* gnu/packages/java.scm (icedtea6)[arguments]: patch Makefile to override
  DEF_OBJCOPY variable definition.
 2015-03-23 10:17:35 +01:00
Ricardo Wurmus
f9e62ad221 gnu: icedtea6: patch ant shebang in unpack phase 
* gnu/packages/java.scm (icedtea6)[arguments]: patch bootstrap ant in the
  `unpack' phase instead of `patch-paths'.
 2015-03-23 10:17:35 +01:00
Ludovic Courtès
ce0614ddb0 gnu: Move 'which' to (gnu packages base). 
* gnu/packages/which.scm: Remove.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/base.scm (which): New variable.
* gnu/packages/aspell.scm, gnu/packages/audio.scm,
  gnu/packages/autogen.scm, gnu/packages/cdrom.scm,
  gnu/packages/compression.scm, gnu/packages/datamash.scm,
  gnu/packages/games.scm, gnu/packages/glib.scm,
  gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm,
  gnu/packages/gps.scm, gnu/packages/guile.scm,
  gnu/packages/java.scm, gnu/packages/libevent.scm,
  gnu/packages/linux.scm, gnu/packages/lisp.scm,
  gnu/packages/node.scm, gnu/packages/ntp.scm,
  gnu/packages/orpheus.scm, gnu/packages/pciutils.scm,
  gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/sawfish.scm,
  gnu/packages/scheme.scm, gnu/packages/ssh.scm,
  gnu/packages/statistics.scm, gnu/packages/texlive.scm,
  gnu/packages/wdiff.scm: Adjust accordingly.
 2015-03-04 17:23:27 +01:00