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Author SHA1 Message Date
hli
eb8da54170
gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene. 
* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene):
New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-04-12 18:25:40 +02:00
Ricardo Wurmus
a247f5c753
services: Support DELETE in MODIFY-SERVICES macro. 
* gnu/services.scm (%modify-service): Add clause for DELETE syntax.
(modify-services): Use FILTER-MAP; adjust docstring.
* doc/guix.texi (System Services): Mention alternative syntax.
(X Window): Use MODIFY-SERVICES syntax.
 2021-04-12 17:49:07 +02:00
Adam Kandur
c1ed3b048d
gnu: Add cl-bodge-queue. 
* gnu/packages/lisp-xyz.scm (sbcl-bodge-queue, cl-bodge-queue,
  ecl-bodge-queue): New variables.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-04-12 17:06:31 +02:00
Nicolas Goaziou
7b04bdaba8
gnu: hydrogen: Update to 1.0.2. 
* gnu/packages/music.scm (hydrogen): Update to 1.0.2.
 2021-04-12 16:06:51 +02:00
Ekaitz Zarraga
f53ec9d99b
gnu: Add openvdb. 
* gnu/packages/graphics.scm (openvdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-04-12 16:03:51 +02:00
Paul Garlick
e698843442
gnu: Add texlive-newtx. 
* gnu/packages/tex.scm: New variable.
 2021-04-12 14:21:23 +01:00
Julien Lepiller
ac3bf4e4da
gnu: java-eclipse-jetty-util: Update to 9.4.39 [security fixes]. 
Fixes CVE-2021-28165 - jetty server high CPU when client send data length >
17408, CVE-2021-28164 - Normalize ambiguous URIs and CVE-2021-28163 - Exclude
webapps directory from deployment scan.

* gnu/packages/java.scm (java-eclipse-jetty-util): Update to 9.4.39.
(java-eclipse-jetty-util-ajax): New variable.
(java-eclipse-jetty-util, java-eclipse-jetty-io, java-eclipse-jetty-http)
(java-eclipse-jetty-jmx, java-eclipse-jetty-server)
(java-eclipse-jetty-security, java-eclipse-jetty-servlet)
(java-eclipse-jetty-xml, java-eclipse-jetty-webapp): Disable tests.
[native-inputs]: Remove test dependencies.
 2021-04-12 15:12:09 +02:00
Efraim Flashner
29f205f7e0
gnu: hangups: Run test suite. 
* gnu/packages/messaging.scm (hangups)[arguments]: Use custom 'check
phase.
 2021-04-12 15:16:58 +03:00
Efraim Flashner
2323a38b01
gnu: hangups: Loosen version restrictions further. 
* gnu/packages/messaging.scm (hangups)[arguments]: Adjust custom
'relax-dependencies phase to allow more dependency versions.
 2021-04-12 15:16:58 +03:00
Ekaitz Zarraga
5414617120
gnu: python-mechanicalsoup: Update to 1.0.0. 
* gnu/packages/python-web.scm (python-mechanicalsoup): Update to
1.0.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pytest-flake8, python-pytest-httpbin,
python-pytest-cov, python-pytest-mock, python-pytest-runner,
python-requests-mock.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-12 15:16:57 +03:00
Mathieu Othacehe
e1a4652099
tests: docker: Increase VM building memory size to 1024MiB. 
This fixes the following error when running the "docker-system" test:

In ice-9/ftw.scm:
   553:30  1 (_ #<directory stream db6660>)
In unknown file:
           0 (readdir #<directory stream db6660>)

ERROR: In procedure readdir:
In procedure readdir: Cannot allocate memory

* gnu/tests/docker.scm (%test-docker-system): Bump image building VM memory
size to 1024 MiB.
 2021-04-12 14:12:49 +02:00
Mathieu Othacehe
98bf60bf4f
system: vm: Add a memory-size argument to system-docker-image. 
* gnu/system/vm.scm (system-docker-image): Add a memory-size argument and pass
it to expression->derivation-in-linux-vm.
 2021-04-12 14:12:49 +02:00
Leo Prikler
331666862c
gnu: renpy: Update to 7.4.4. 
* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.4.
(python2-pygame-sdl2)[renpy-version]: Likewise.
 2021-04-12 13:13:11 +02:00
methuselah-0
f890bf6392
gnu: nginx: Enable stream module. 
* gnu/packages/web.scm (nginx)[arguments]: Add --with-stream option in the 'configure phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-12 12:51:15 +02:00
methuselah-0
b9986cac3e
gnu: Add prips. 
gnu/packages/admin.scm (prips): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-12 12:51:11 +02:00
Ludovic Courtès
f67663d669
gnu: blis: Add deprecated aliases. 
Add deprecated aliases for packages removed in the parent commit.

* gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New
variables.
 2021-04-12 12:38:01 +02:00
Philip McGrath
969adb235e
gnu: blis: Update to 0.8.1. 
* gnu/packages/maths.scm (make-blis): Remove internal function.
Inline into ...
(bliss): ... this variable. Update to 0.8.1.
[native-inputs]: Add "python" and "perl".
[arguments]: Adjust 'configure' phase to take advantage of new support
for "configuration families" with runtime hardware detection. Select
configuration automatically based on target systems, and allow
"--blis-config=" in #:configure-flags to override the default.
When building for x86_64, include all supported microarchetecture
specializations. Add "--enable-verbose-make" configure flag for better
build logs. Stop ignoring other flags from #:configure-flags.
Remove explicit #:substitutable? argument: the package is now always
substitutable. Add (srfi srfi-1) to #:modules.
(blis/x86_64): Remove internal macro.
(blis-sandybridge): Remove package: included in 'blis'.
(blis-haswell): Remove package: included in 'blis'.
(blis-knl): Remove package: included in 'blis'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-12 12:38:01 +02:00
Mathieu Othacehe
fc37346ff4
ci: Fix system-tests subset. 
* gnu/ci.scm (system-test-jobs): Make sure that "all-system-tests" is also
covered by the "current-guix-package" parameter.
 2021-04-12 11:55:41 +02:00
Guillaume Le Vaillant
05aa5f9f39
gnu: monero-gui: Update to 0.17.2.0. 
* gnu/packages/finance.scm (monero-gui): Update to 0.17.2.0.
 2021-04-12 11:17:59 +02:00
Guillaume Le Vaillant
3c1cfd7d32
gnu: monero: Update to 0.17.2.0. 
* gnu/packages/finance.scm (monero): Update to 0.17.2.0.
 2021-04-12 11:17:59 +02:00
Morgan Smith
8799369983
gnu: newlib-nano: Fix nano lib and header paths. 
* gnu/packages/embedded.scm (newlib-nano-arm-none-eabi)[arguments]: Hard link
library files from *.a to *_nano.a. Hard link newlib.h to a common location.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-12 11:22:21 +03:00
Guillaume Le Vaillant
c901ec27d7
gnu: electron-cash: Add missing input. 
Fixes <https://bugs.gnu.org/47654>.

* gnu/packages/finance.scm (electron-cash)[inputs]: Add python-pathvalidate.
 2021-04-12 10:16:07 +02:00
Guillaume Le Vaillant
5c1f673554
gnu: Add python-pathvalidate. 
* gnu/packages/python-xyz.scm (python-pathvalidate): New variable.
 2021-04-12 10:12:09 +02:00
Guillaume Le Vaillant
bceca1ff58
gnu: Add python-allpairspy. 
* gnu/packages/python-check.scm (python-allpairspy): New variable.
 2021-04-12 09:50:54 +02:00
Mark H Weaver
e18e2e458f
scripts: system: Default to -v3 when building a system. 
This is a followup to 8f9052d543.

* guix/scripts/system.scm (verbosity-level): Change the default
from 2 to 3 when building a system.
 2021-04-11 22:13:17 -04:00
Leo Famulari
ed3ef756f5
gnu: Syncthing: Update to 1.15.1 [fixes CVE-2021-21404]. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.15.1.
[source]: Use bundled dependencies.
[inputs]: Remove field.
[arguments]: Adjust the custom 'build' and 'install' phases for 1.15.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-11 21:52:34 -04:00
Tobias Geerinckx-Rice
f5898781e2
gnu: python-cython: Update to 0.29.22. 
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.22.
 2021-04-12 01:24:46 +02:00
Tobias Geerinckx-Rice
9b34c9167b
gnu: python-fastimport: Update to 0.9.9. 
* gnu/packages/python-xyz.scm (python-fastimport): Update to 0.9.9.
 2021-04-12 00:51:49 +02:00
Tobias Geerinckx-Rice
e737e74ec0
gnu: minetest: Update to 5.4.1. 
* gnu/packages/games.scm (minetest, minetest-data): Update to 5.4.1.
 2021-04-12 00:24:02 +02:00
Tobias Geerinckx-Rice
1135b347db
gnu: ghq: Update to 1.1.7. 
* gnu/packages/version-control.scm (ghq): Update to 1.1.7.
 2021-04-12 00:03:15 +02:00
Tobias Geerinckx-Rice
5661cdce25
gnu: lagrange: Update to 1.3.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.3.2.
 2021-04-11 23:59:37 +02:00
Tobias Geerinckx-Rice
40707f2e0b
gnu: irssi: Update to 1.2.3. 
* gnu/packages/irc.scm (irssi): Update to 1.2.3.
 2021-04-11 23:55:17 +02:00
Tobias Geerinckx-Rice
9d7577d5d8
gnu: edgar: Update to 1.34. 
* gnu/packages/games.scm (edgar): Update to 1.34.
 2021-04-11 23:46:30 +02:00
Tobias Geerinckx-Rice
d286ea6d5b
gnu: libime: Update to 1.0.6. 
* gnu/packages/fcitx5.scm (libime): Update to 1.0.6.
 2021-04-11 23:39:17 +02:00
Tobias Geerinckx-Rice
4ebf6ccb3e
gnu: acpica: Update to 20210331. 
* gnu/packages/admin.scm (acpica): Update to 20210331.
 2021-04-11 18:07:40 +02:00
Tobias Geerinckx-Rice
50ad53c711
gnu: python-skyfield: Update to 1.38. 
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.38.
 2021-04-11 18:07:40 +02:00
Tobias Geerinckx-Rice
96feb7515e
gnu: librsync: Update to 2.3.2. 
* gnu/packages/rsync.scm (librsync): Update to 2.3.2.
 2021-04-11 18:07:39 +02:00
Tobias Geerinckx-Rice
2946a8c50c
.guix-authorizations: Add raghavgururajan. 
* .guix-authorizations: Add raghavgururajan to the committers.
 2021-04-11 18:07:39 +02:00
Hartmut Goebel
03e80cf422
gnu: Add python-pysctp. 
* gnu/packages/networking.scm(python-pysctp): New variable.
 2021-04-11 17:02:30 +02:00
Hartmut Goebel
3281ba6eae
gnu: lksctp-tools: Fix build of include file. 
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch:
  New file.
* gnu/local.mk[patches]: Add it.
* gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch.
 2021-04-11 17:02:30 +02:00
Pierre Langlois
fca8ef0d76
gnu: gpodder: Update to 3.10.18. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.18.
[native-inputs]: Add python-pytest, python-pytest-cov,
python-pytest-httpserver and which.
[inputs]: Add python-requests.
 2021-04-11 15:54:02 +01:00
Pierre Langlois
754a7608cc
gnu: Add python-pytest-httpserver. 
* gnu/packages/check.scm (python-pytest-httpserver): New variable.
 2021-04-11 15:53:57 +01:00
Nicolas Goaziou
9d92819dba
gnu: scintilla: Update to 5.0.1. 
* gnu/packages/text-editors.scm (scintilla): Update to 5.0.1.
 2021-04-11 14:42:25 +02:00
Nicolas Goaziou
098ae2f181
gnu: emacs-ivy-posframe: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-posframe): Update to 0.6.0.
 2021-04-11 14:20:48 +02:00
Nicolas Goaziou
832e0be618
gnu: emacs-posframe: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.0.
 2021-04-11 14:20:42 +02:00
Alexandru-Sergiu Marton
337011c567
gnu: Add abook. 
* gnu/packages/mail.scm (abook): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-11 12:14:11 +02:00
LibreMiami
2a624253bc
gnu: Add python-plumbum. 
* gnu/packages/python-xyz.scm (python-plumbum): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-11 11:45:47 +02:00
Alexander Krotov
8ec8fe0fcc
gnu: Add lagrange. 
* gnu/packages/web-browsers.scm (lagrange): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-11 11:37:06 +02:00
Joseph LaFreniere
432d801dde
gnu: Add emacs-ghq. 
* gnu/packages/emacs-xyz.scm (emacs-ghq): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-11 11:27:45 +02:00
nixo
2d0a546508
gnu: Add emacs-elfeed-protocol. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-protocol): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-11 11:23:30 +02:00