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Author SHA1 Message Date
Christopher Baines
afdb437c82
gnu: Add ruby-bond. 
* gnu/packages/ruby.scm (ruby-bond): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
a8d2bf3cab
gnu: Add ruby-bacon-bits. 
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
 2018-03-03 12:51:26 +00:00
Christopher Baines
cf646acf96
gnu: Add ruby-mocha-on-bacon. 
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
 2018-03-03 12:51:25 +00:00
Christopher Baines
433dc74611
gnu: networking: Add czmq. 
* gnu/packages/networking.scm (czmq): New variable.
 2018-03-03 12:51:23 +00:00
Tobias Geerinckx-Rice
add928d35f
gnu: ghc-refact: Fix typo in description. 
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice
75377c6c48
gnu: quagga: Update to 1.2.4. 
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
 2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice
e6d30cf755
gnu: conky: Remove redundant MKDIR-P. 
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
 2018-03-03 13:27:17 +01:00
Tobias Geerinckx-Rice
9d13f82da8
gnu: sslh: Update to 1.19c. 
* gnu/packages/networking.scm (sslh): Update to 1.19c.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
dbefd3ff72
gnu: wv: Edit description. 
Wv is still unmaintained – this just makes it more obvious.

* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones.  Align more closely with the
upstream description.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
83a9003c5d
gnu: libseccomp: Update to 2.3.3. 
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
74a2f8ff1f
gnu: hdparm: Update to 9.54. 
* gnu/packages/linux.scm (hdparm): Update to 9.54.
 2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice
f4009ade25
gnu: sdl2: Update to 2.0.8. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
 2018-03-03 13:27:15 +01:00
Ricardo Wurmus
ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus
fac40f38fe
gnu: r-dbi: Update to 0.8. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus
081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
 2018-03-03 10:46:35 +01:00
Ludovic Courtès
eac026e5c8
linux-initrd: Add virtio modules to '%base-initrd-modules'. 
Fixes a regression in installation tests, whereby 'guix system init'
would report that virtio modules are missing for the target devices.
In practice virtio modules were always available since 'base-initrd' was
always called with #:virtio? #t.  This commit simply moves them to
'%base-initrd-modules' so that 'guix system' knows they're available.

Reported by Danny Milosavljevic <dannym@scratchpost.org> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>.

* gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio
modules.
(base-initrd): Remove #:virtio? and 'virtio-modules'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
(system-qemu-image, virtualized-operating-system): Remove uses of
 #:virtio?.
* doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès
f850e0da8e
system: beaglebone-black: Use 'initrd-modules'. 
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules'
instead of 'initrd'.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès
5a3716aebf
vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd. 
Fixes a regression introduced in
bc499b113a, whereby the default initrd
used by 'expression->derivation-in-linux-vm' would lack all the usual
modules: virtio, nls_iso8859-1, etc.

* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass
 #:linux-modules to 'base-initrd'.
 2018-03-03 09:41:21 +01:00
Ludovic Courtès
3cb3a4e6e5
linux-initrd: 'file-system-modules' returns the right module list. 
Fixes a bug whereby, for an "iso9660" file system, it would return
'("iso9660" "isofs"), i.e., both the key and the value.

Reported by Danny Milosavljevic <dannym@scratchpost.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>.

* gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns
a key/value pair; match it.
 2018-03-03 09:41:21 +01:00
Ricardo Wurmus
3ede1550e8
gnu: cutadapt: Update to 1.16. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
 2018-03-02 23:44:16 +01:00
Ricardo Wurmus
62a4b952c0
gnu: python-xopen: Update to 0.3.2. 
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
 2018-03-02 23:43:55 +01:00
Ricardo Wurmus
fa5965990d
gnu: Add r-hpar. 
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-02 23:24:57 +01:00
Ricardo Wurmus
2a112be09a
gnu: Add r-powerplus. 
* gnu/packages/cran.scm (r-powerplus): New variable.
 2018-03-02 23:07:26 +01:00
Ricardo Wurmus
d976454c6b
gnu: Add r-np. 
* gnu/packages/cran.scm (r-np): New variable.
 2018-03-02 23:07:20 +01:00
Ricardo Wurmus
7b81a7eabf
gnu: Add r-phontools. 
* gnu/packages/cran.scm (r-phontools): New variable.
 2018-03-02 23:07:12 +01:00
Ricardo Wurmus
68b6a67e94
gnu: Add r-complexplus. 
* gnu/packages/cran.scm (r-complexplus): New variable.
 2018-03-02 23:07:04 +01:00
Ricardo Wurmus
f96eda90d5
gnu: Add r-expm. 
* gnu/packages/cran.scm (r-expm): New variable.
 2018-03-02 23:06:57 +01:00
Ricardo Wurmus
7531ee842c
gnu: Add r-trend. 
* gnu/packages/cran.scm (r-trend): New variable.
 2018-03-02 23:06:50 +01:00
Ricardo Wurmus
d32e572489
gnu: Add r-cubature. 
* gnu/packages/cran.scm (r-cubature): New variable.
 2018-03-02 23:06:41 +01:00
Ricardo Wurmus
6615a36421
gnu: Add r-urca. 
* gnu/packages/cran.scm (r-urca): New variable.
 2018-03-02 23:06:33 +01:00
Ricardo Wurmus
5b25bc55dc
gnu: Add r-fractal. 
* gnu/packages/cran.scm (r-fractal): New variable.
 2018-03-02 23:06:26 +01:00
Ricardo Wurmus
19da7fe314
gnu: Add r-extradistr. 
* gnu/packages/cran.scm (r-extradistr): New variable.
 2018-03-02 23:06:17 +01:00
Ricardo Wurmus
4993a02ad7
gnu: Add r-tsa. 
* gnu/packages/cran.scm (r-tsa): New variable.
 2018-03-02 23:06:10 +01:00
Ricardo Wurmus
a2c079a780
gnu: Add r-wmtsa. 
* gnu/packages/cran.scm (r-wmtsa): New variable.
 2018-03-02 23:06:00 +01:00
Ricardo Wurmus
b6dc325538
gnu: Add r-tseries. 
* gnu/packages/cran.scm (r-tseries): New variable.
 2018-03-02 23:05:52 +01:00
Ricardo Wurmus
dceb159206
gnu: Add r-quantmod. 
* gnu/packages/cran.scm (r-quantmod): New variable.
 2018-03-02 23:05:43 +01:00
Ricardo Wurmus
0be7effefa
gnu: Add r-sapa. 
* gnu/packages/cran.scm (r-sapa): New variable.
 2018-03-02 23:05:35 +01:00
Ricardo Wurmus
034ac9d67a
gnu: Add r-ifultools. 
* gnu/packages/cran.scm (r-ifultools): New variable.
 2018-03-02 23:05:14 +01:00
Ricardo Wurmus
d3cb62e58d
gnu: Add r-splus2r. 
* gnu/packages/cran.scm (r-splus2r): New variable.
 2018-03-02 23:05:02 +01:00
Ricardo Wurmus
0b64332c74
gnu: Add r-leaps. 
* gnu/packages/cran.scm (r-leaps): New variable.
 2018-03-02 23:03:10 +01:00
Ricardo Wurmus
93c21ddc86
gnu: Add r-ttr. 
* gnu/packages/cran.scm (r-ttr): New variable.
 2018-03-02 22:55:10 +01:00
Ricardo Wurmus
4e35c4290e
gnu: Add r-rbiofabric. 
* gnu/packages/graph.scm (r-rbiofabric): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus
1088744d87
gnu: Add r-sna. 
* gnu/packages/cran.scm (r-sna): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus
07a2f34d5c
gnu: Add r-statnet-common. 
* gnu/packages/cran.scm (r-statnet-common): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus
5f4565b18f
gnu: Add r-network. 
* gnu/packages/cran.scm (r-network): New variable.
 2018-03-02 22:23:18 +01:00
Tobias Geerinckx-Rice
b01a1b34f2
gnu: nghttp2: Update to 1.31.0. 
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice
6fda93e6c8
gnu: libpsl: Update to 0.20.1. 
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice
5658b4ce69
gnu: zerofree: Update to 1.1.1. 
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice
a40f732bb6
gnu: python-webencodings: Fix typo in description. 
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
 2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice
139ecdee8e
gnu: delta: Remove redundant code. 
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
 2018-03-02 15:52:56 +01:00