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125177 commits

Author SHA1 Message Date
Sharlatan Hellseher
07a9f57a69
gnu: python-stdatamodels: Update to 1.8.0.
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.8.0.
[propagated-inputs]: Remove python-jsonschema.
[native-inputs]: Remove python-pytest-openfiles.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:08:01 +01:00
Sharlatan Hellseher
20e9fd2bcd
gnu: python-roman-datamodels: Remove all test constraints.
* gnu/packages/astronomy.scm (python-roman-datamodels): Remove all test
constraints. All of 1115 passed.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:38 +01:00
Sharlatan Hellseher
e211419e0a
gnu: python-roman-datamodels: Update to 0.17.1.
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to
0.17.1.
[arguments]{phases}: Add 'set-env phase to pass tests.
[native-inputs]: Remove python-pytest-openfiles. Add python-pytest-env.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:19 +01:00
Sharlatan Hellseher
9bf19a302b
gnu: python-rad: Update to 0.17.1.
* gnu/packages/astronomy.scm (python-rad): Update to 0.17.1.
[arguments]{tests?}: Disable them to break dependencies cycle.
[native-inputs]: Remove python-astropy, python-pytest,
python-pytest-doctestplus, python-pytest-openfiles.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:19 +01:00
Sharlatan Hellseher
56dae77d1c
gnu: python-pyvo: Update to 1.4.2.
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.4.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
1cd93c474e
gnu: python-photutils: Update to 1.9.0.
* gnu/packages/astronomy.scm (python-photutils): Update to 1.9.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
b38d893b90
gnu: python-jwst: Update to 1.11.4.
* gnu/packages/astronomy.scm (python-jwst): Update to 1.11.4.
[propagated-inputs]: Add python-asdf-transform-schemas, python-jplephem.
[native-inputs]: Remove python-codecov, python-flake8.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
815d0c00d5
gnu: python-fitsio: Update to 1.2.0.
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.2.0.
[arguments]{phases}: Swap 'unbundle-cfitsio to 'set-env as there is
support for system CFitsio library provided.
[inputs]: Add zlib.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
8b6d84a81c
gnu: python-crds: Update to 11.17.4.
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.4.
[propagated-inputs]: Remove python-lxml.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
85e1945e13
gnu: python-bayesicfitting: Update to 3.2.0.
* gnu/packages/astronomy.scm (python-bayesicfitting): Update to 3.2.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
0f44e4fe25
gnu: python-sunpy: Enable more tests.
* gnu/packages/astronomy.scm (python-sunpy): Enable tests detecting
python-cdflib metadata. Update annotation for still disabled tests.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
4cef9cb160
gnu: python-cdflib: Fix version detection.
* gnu/packages/astronomy.scm (python-cdflib): Fix version detection
during build Wheel package.
[arguments]: Add new phase 'set-env-version.
[native-inputs]: Add python-setuptools-scm.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
03c7b82cf6
gnu: python-cdflib: Update to 1.1.0.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.1.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
6e44f200a2
gnu: python-astropy-healpix: Update to 1.0.0.
* gnu/packages/astronomy.scm (python-astropy-healpix): Update to 1.0.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:18 +01:00
Sharlatan Hellseher
9afbbfc8ab
gnu: splash: Update to 3.8.4.
* gnu/packages/astronomy.scm (splash): Update to 3.8.4.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Sharlatan Hellseher
baa5222979
gnu: libxisf: Extend description.
* gnu/packages/astronomy.scm (libxisf)[description]: Explain acronym.
Add essential links to the mentioned standard and the service.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Sharlatan Hellseher
c8be9fb5aa
gnu: libxisf: Update to 0.2.9.
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
fanquake
22b4c8d719
gnu: python-coloful: Update to 0.5.5.
* gnu/packages/python-xyz.scm (python-colorful): Update to 0.5.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
fanquake
47fe9da5d3
gnu: python-pyotp: Update to 2.9.0.
* gnu/packages/python-crypto.scm (python-pyotp): Update to 2.9.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
8bc78fc86b
gnu: gajim: Clean up formatting.
* gnu/packages/messaging.scm (gajim): Clean up formatting.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
b0938affbb
gnu: python-nbxmpp: Clean up formatting.
* gnu/packages/messaging.scm (python-nbxmpp): Clean up formatting.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
79261203fd
gnu: gajim-openpgp: Update to 1.5.0.
* gnu/packages/messaging.scm (gajim-openpgp): Update to 1.5.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
d1412b1fb3
gnu: gajim-omemo: Update to 2.9.0.
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.9.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
e99e0e0816
gnu: gajim: Update to 1.7.3.
* gnu/packages/messaging.scm (gajim): Update to 1.7.3.
[arguments]: Switch to "python -m build".  To use pyproject-build-system,
support for backend-path is needed.  Add metadata build and install phase.
Switch to "python -m unittest" as test method, following upstream
recommendation.  Generate gdk-pixbuf cache and include result in wrapper.
Allows Gajim to run in pure environments.
[native-search-paths]: Update.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:17 +01:00
Parnikkapore
9d7daaf10f
gnu: python-nbxmpp: Update to 4.2.2.
Gajim will not build at this commit.

* gnu/packages/messaging.scm (python-nbxmpp): Update to 4.2.2.
[arguments]: Specify "python -m unittest" as test method.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-27 12:07:14 +01:00
Clément Lassieur
2c9009f9fe
gnu: transmission: Fix loading icons in pure environments.
* gnu/packages/bittorrent.scm (transmission)[arguments]: Add a 'wrap-program'
phase that sets GDK_PIXBUF_MODULE_FILE.
2023-09-27 13:03:45 +02:00
Tobias Geerinckx-Rice
15fdeaeb2d
gnu: alex4: Remove non-free package.
Its readme.txt goes out of its way to licence only ‘source code’ under
the GPL2+, a reading supposedly confirmed by the author:

https://libregamewiki.org/Talk:Alex_the_Allegator_4

However, we don't need to rely on the authenticity of that claim: the
game data is clearly not licenced, and is required to run the binary.
Without it, the game segfaults.

* gnu/packages/games.scm (alex4): Remove variable.

Fixes <https://issues.guix.gnu.org/65881>.
2023-09-24 02:00:00 +02:00
Maxim Cournoyer
06dc36ffb7
doc: Update bug-reference configuration snippet.
* doc/contributing.texi (The Perfect Setup)
<Viewing Bugs within Emacs>: Properly quote Elisp functions.  Add 'require'
directives.  Set BUG-REFERENCE-URL-FORMAT so the configuration is
self-contained.

Suggested-by: Mekeor Melire <mekeor@posteo.de>
2023-09-26 14:06:04 -04:00
Ludovic Courtès
ba21eeb565
tests: Assume ‘git’ is always available.
* tests/channels.scm (gpg+git-available?): Check for ‘gpg-command’
only.
Remove all ‘test-skip’ statements.
* tests/derivations.scm: Likewise.
* tests/git-authenticate.scm: Likewise.
* tests/git.scm: Likewise.
* tests/import-git.scm: Likewise.
2023-09-26 17:36:59 +02:00
Ludovic Courtès
13b0cf85eb
git-download: Use “builtin:git-download” when available.
Fixes <https://issues.guix.gnu.org/63331>.

Longer-term this will remove Git from the derivation graph when its sole
use is to perform a checkout for a fixed-output derivation, thereby
breaking dependency cycles that can arise in these situations.

* guix/git-download.scm (git-fetch): Rename to…
(git-fetch/in-band): … this.  Deal with GIT or GUILE being #f.
(git-fetch/built-in, built-in-builders*, git-fetch): New procedures.
* tests/builders.scm ("git-fetch, file URI"): New test.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
c4a1d69a69
perform-download: Use the ‘git’ command captured at configure time.
* guix/scripts/perform-download.scm (perform-git-download): Pass #:git-command
to ‘git-fetch-with-fallback’.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
f651a35969
build: Add dependency on Git.
* configure.ac: Check for ‘git’ and substitute ‘GIT’.
* guix/config.scm.in (%git): New variable.
* guix/self.scm (compiled-guix): Define ‘git’ and pass it to
‘make-config.scm’.
(make-config.scm): Add #:git; emit a ‘%git’ variable.
* doc/guix.texi (Requirements): Add it.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
95f2123135
daemon: Add “git-download” built-in builder.
The new builder makes it possible to break cycles that occurs when the
fixed-output derivation for the source of a dependency of ‘git’ would
itself depend on ‘git’.

* guix/scripts/perform-download.scm (perform-git-download): New
procedure.
(perform-download): Move fixed-output derivation check to…
(guix-perform-download): … here.  Invoke ‘perform-download’ or
‘perform-git-download’ depending on what ‘derivation-builder’ returns.
* nix/libstore/builtins.cc (builtins): Add “git-download”.
* tests/derivations.scm ("built-in-builders"): Update.
("'git-download' built-in builder")
("'git-download' built-in builder, invalid hash")
("'git-download' built-in builder, invalid commit")
("'git-download' built-in builder, not found"): New tests.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
9d0e2002a5
perform-download: Remove unused one-argument clause.
Code in ‘builtins.cc’ only ever invokes ‘guix perform-download’ with two
arguments.

* guix/scripts/perform-download.scm (guix-perform-download): Remove
unused one-argument clause.
(perform-download): Make ‘output’ parameter mandatory; remove ‘output*’
variable.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
c7ed1e0160
git-download: Honor the ‘GUIX_DOWNLOAD_FALLBACK_TEST’ environment variable.
* guix/git-download.scm (git-fetch): Honor ‘%download-fallback-test’.
2023-09-26 17:36:58 +02:00
Ludovic Courtès
811b249397
git-download: Move fallback code to (guix build git).
* guix/build/git.scm (git-fetch-with-fallback): New procedure, with code
taken from…
* guix/git-download.scm (git-fetch): … here.
[modules]: Remove modules that are no longer directly used in ‘build’.
[build]: Use ‘git-fetch-with-fallback’.
2023-09-26 17:36:57 +02:00
Ludovic Courtès
7f3ebd6dbc
tests: Adjust ‘guix graph --path’ test to latest Emacs changes.
This is a followup to 3349a50d70.

* tests/guix-graph.sh: Adjust ‘path’.
2023-09-26 17:36:57 +02:00
Maxim Cournoyer
4d904f2b16
gnu: imgui: Update to 1.89.9.
* gnu/packages/toolkits.scm (imgui): Update to 1.89.9.
2023-09-26 11:30:52 -04:00
dan
031784f9f9
gnu: Add tracy.
* gnu/packages/profiling.scm (tracy): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-09-26 11:30:52 -04:00
dan
bdce0646ae
gnu: Add tracy-wayland.
* gnu/packages/profiling.scm (tracy-wayland): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-09-26 11:30:52 -04:00
Maxim Cournoyer
e5f27fdfb3
gnu: glfw: Patch dlopen calls.
* gnu/packages/gl.scm (glfw) [arguments]: Add #:modules and #:phases argument.
[inputs]: New field.
2023-09-26 11:30:51 -04:00
Maxim Cournoyer
bf946ad591
gnu: imgui: Enable freetype support.
* gnu/packages/toolkits.scm (imgui) [arguments]: Add -DIMGUI_ENABLE_FREETYPE
to make flags.
[inputs]: Add freetype.
2023-09-26 11:30:51 -04:00
Maxim Cournoyer
219922a694
gnu: capstone: Update to 5.0.1.
* gnu/packages/engineering.scm (capstone): Update to 5.0.1.
2023-09-26 11:30:51 -04:00
Maxim Cournoyer
cd22a80e43
gnu: gtypist: Install the gtypist-mode Emacs major mode.
* gnu/packages/games.scm (gtypist) [source]: Delete trailing #t in snippet.
[native-inputs]: Add emacs-minimal.
2023-09-26 11:30:51 -04:00
Efraim Flashner
b2887da40c
multiqc: Don't propagate inputs.
* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Move all
packages ...
[inputs]: ... to here.
2023-09-26 13:36:02 +03:00
Clément Lassieur
27ec9eeceb
gnu: transmission: Restore HTML files in the default output.
This fixes transmission-daemon.

* gnu/packages/bittorrent.scm (transmission)[arguments]: remove "transmission"
directory from the 'move-gui' procedure.
2023-09-26 11:08:33 +02:00
Maxim Cournoyer
fafd3caef0
gnu: aalib: Really build the shared library on powerpc64le-linux.
Fixes <https://issues.guix.gnu.org/57134>.

The old build scripts were buggy and causing a static library to be produced
instead, which would fail to be linked by gst-plugins-good.

* gnu/packages/video.scm (aalib) [native-inputs]: Remove labels.
[arguments]: Use gexps.
<configure-flags>: New argument.
<phases>: Remove update-config-scripts and configure override.
Add force-autoreconf.

Reported-by: Marcel van der Boom <marcel@van-der-boom.nl>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-09-25 13:45:58 -04:00
Maxim Cournoyer
713f959d49
gnu: edk2-tools: Update to 202308.
* gnu/packages/firmware.scm (edk2-tools): Update to 202308.
[arguments] <make-flags>: Add CC.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-09-25 13:43:52 -04:00
Maxim Cournoyer
c428246bcd
doc: Add new 'Circular Module Dependencies' section.
* doc/contributing.texi (Circular Module Dependencies): New subsection.

Series-version: 2
Series-to: 65860@debbugs.gnu.org
Patch-cc: mhw@netris.org
Cover-letter:
Resolve a circular module dependencies in embedded modules
This series is the culmination of at least a day of effort tracking down the
source of a module dependency cycle (!).  The last commit adds some guidelines
in the hope to avoid a repeat (perhaps 'lint' could be taught to
automate these checks).
END
2023-09-25 10:33:04 -04:00
Maxim Cournoyer
35c1df5bd6
gnu: embedded: Turn packages using top-level variables into procedures.
Fixes <https://issues.guix.gnu.org/65716>.

Before this change, simply adding the following import:

  modified   gnu/packages/firmware.scm
  @@ -42,6 +42,7 @@ (define-module (gnu packages firmware)
     #:use-module (gnu packages admin)
     #:use-module (gnu packages autotools)
     #:use-module (gnu packages assembly)
  +  #:use-module (gnu packages avr)
     #:use-module (gnu packages backup)
     #:use-module (gnu packages base)
     #:use-module (gnu packages bash)

Would cause byte compilation and/or evaluation to fail due to a circular
module dependency.

* gnu/packages/embedded.scm: Add commentary.
(gcc-arm-none-eabi-4.9, gcc-arm-none-eabi-6, newlib-arm-none-eabi)
(newlib-nano-arm-none-eabi, gcc-arm-none-eabi-7-2018-q2-update)
(newlib-arm-none-eabi-7-2018-q2-update)
(newlib-nano-arm-none-eabi-7-2018-q2-update)
(arm-none-eabi-toolchain-4.9, arm-none-eabi-nano-toolchain-4.9)
(arm-none-eabi-toolchain-6, arm-none-eabi-nano-toolchain-6)
(arm-none-eabi-toolchain-7-2018-q2-update, gdb-arm-none-eabi)
(propeller-binutils, propeller-gcc-6, propeller-gcc-4)
(propeller-gcc, propeller-toolchain, propeller-development-suite)
(gcc-vc4): Turn into procedures, prefixing the procedure name with 'make-',
and adjust all users.
(make-libstdc++-arm-none-eabi) [arguments]: Avoid an unused warning.
(arm-none-eabi-toolchain):  Rename to...
(make-arm-none-eabi-toolchain): ... this.
* gnu/packages/raspberry-pi.scm (raspi-arm-chainloader) [native-inputs]:
Replace gcc-arm-none-eabi-6 with (make-arm-none-eabi-toolchain).
* gnu/packages/axoloti.scm (axoloti-runtime)
[inputs]: Replace arm-none-eabi-nano-toolchain-4.9
with (make-arm-none-eabi-nano-toolchain-4.9).
(axoloti-patcher): Likewise.
(axoloti-patcher-next) [inputs]: Replace
arm-none-eabi-nano-toolchain-7-2018-q2-update
with (make-arm-none-eabi-nano-toolchain-7-2018-q2-update).

Series-changes: 2
- Use mlambda for procedures
2023-09-25 10:33:04 -04:00