Vagrant Cascadian
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bf70490223
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gnu: umi-tools: Fix typo "containing".
* gnu/packages/bioinformatics (umi-tools)[description]: Fix typo.
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2019-05-22 18:09:35 -07:00 |
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Vagrant Cascadian
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df5fb3ca28
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gnu: r-gage: Fix typo "functions".
* gnu/packages/bioinformatics (r-gage)[description]: Fix typo.
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2019-05-22 18:09:32 -07:00 |
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Ricardo Wurmus
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a8a465e816
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gnu: r-limma: Update to 3.40.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.2.
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2019-05-20 15:06:07 +02:00 |
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Ricardo Wurmus
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9c714b9ba9
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gnu: r-edger: Update to 3.26.3.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.3.
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2019-05-20 15:06:01 +02:00 |
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Ricardo Wurmus
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7a94438130
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gnu: r-scater: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.1.
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2019-05-20 12:00:38 +02:00 |
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Ricardo Wurmus
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461fb28ac5
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gnu: r-seurat: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.1.
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2019-05-20 12:00:37 +02:00 |
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Ricardo Wurmus
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d94c698a13
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gnu: r-maldiquant: Update to 1.19.3.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.3.
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2019-05-20 12:00:37 +02:00 |
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Ricardo Wurmus
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7c97f45700
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gnu: r-edger: Update to 3.26.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.1.
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2019-05-20 12:00:37 +02:00 |
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Ricardo Wurmus
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a4ff3255d4
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gnu: star: Update to 2.7.1a.
* gnu/packages/bioinformatics.scm (star): Update to 2.7.1a.
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2019-05-16 13:45:23 +02:00 |
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Ricardo Wurmus
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44323e63a3
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gnu: Add ataqv.
* gnu/packages/bioinformatics.scm (ataqv): New variable.
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2019-05-14 16:15:19 +02:00 |
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Ricardo Wurmus
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21ec924868
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gnu: r-hdf5array: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.1.
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2019-05-11 12:05:35 +02:00 |
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Ricardo Wurmus
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3addf736d5
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gnu: r-systempiper: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
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2019-05-06 00:14:44 +02:00 |
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Ricardo Wurmus
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9bcbca135b
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gnu: r-rsamtools: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
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2019-05-06 00:14:44 +02:00 |
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Ricardo Wurmus
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82d9340b0c
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gnu: r-impute: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
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2019-05-06 00:14:44 +02:00 |
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Ricardo Wurmus
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2b4ac1d77e
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gnu: r-rcas: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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8322c860f9
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gnu: r-methylkit: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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b173dbe617
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gnu: r-annotationhub: Update to 2.16.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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a8abc8dd3a
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gnu: r-fastseg: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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e699e8e599
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gnu: r-keggrest: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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c798455d87
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gnu: r-gage: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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d4ef1d59cc
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gnu: r-genomicfiles: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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70a3e4499d
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gnu: r-complexheatmap: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0.
[propagated-inputs]: Add r-clue and r-png.
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2019-05-06 00:14:43 +02:00 |
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Ricardo Wurmus
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e2cb23404c
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gnu: r-dirichletmultinomial: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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0af6efa3c5
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gnu: r-ensembldb: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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96f98c5b72
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gnu: r-organismdbi: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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a98c3b4ae4
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gnu: r-biovizbase: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.32.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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d38fbacad1
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gnu: r-ggbio: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.32.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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623be1a443
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gnu: r-gqtlbase: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.16.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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ed7de45655
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gnu: r-snpstats: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.34.0.
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2019-05-06 00:14:42 +02:00 |
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Ricardo Wurmus
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3c5f5b4154
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gnu: r-erma: Update to 1.0.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.0.0.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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89ba9a7226
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gnu: r-ldblock: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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a349d57a46
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gnu: r-gqtlstats: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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105d9e2cb4
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gnu: r-gviz: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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1b454f9f69
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gnu: r-gwascat: Update to 2.16.0.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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256609eb46
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gnu: r-sushi: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
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2019-05-06 00:14:41 +02:00 |
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Ricardo Wurmus
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7705165882
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gnu: r-fithic: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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e998a26e1d
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gnu: r-hitc: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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65925573be
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gnu: r-hdf5array: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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d5625b3a9e
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gnu: r-rhdf5lib: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.0.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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583b4fd6e3
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gnu: r-beachmat: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.0.0.
[inputs]: Remove hdf5 and zlib.
[propagated-inputs]: Rmeove r-hdf5array, r-rcpp, r-rhdf5, and r-rhdf5lib.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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029cefdd90
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gnu: r-singlecellexperiment: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.6.0.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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70d04dc183
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gnu: r-scater: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.0.
[propagated-inputs]: Add r-biocneighbors and r-biocsingular; remove r-plyr,
r-reshape2, and r-rhdf5lib.
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2019-05-06 00:14:40 +02:00 |
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Ricardo Wurmus
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4540727a21
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gnu: r-scran: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.0.
[propagated-inputs]: Add r-bh, r-biocsingular, and r-dqrng; remove r-rhdf5lib.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
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f2a63d1588
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gnu: r-delayedmatrixstats: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.0.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
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fab5f7c8d9
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gnu: r-interactivedisplaybase: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.22.0.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
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975b72fa10
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gnu: r-edaseq: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.18.0.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
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b765fc4a4c
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gnu: r-deseq: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.36.0.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
|
95f3a46630
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gnu: r-aroma-light: Update to 3.14.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.14.0.
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2019-05-06 00:14:39 +02:00 |
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Ricardo Wurmus
|
dd03589939
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gnu: r-msnid: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.0.
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2019-05-06 00:14:38 +02:00 |
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Ricardo Wurmus
|
b65c264907
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gnu: r-msnbase: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.0.
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2019-05-06 00:14:38 +02:00 |
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