Commit graph

136252 commits

Author SHA1 Message Date
Ricardo Wurmus
a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
863e4f3fad
gnu: r-mlinterfaces: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.84.0.

Change-Id: I92ed0cc7b971ac04eac715d47031ce2dcee1fd65
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
38a5a2ee34
gnu: r-clusterexperiment: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.24.0.
[propagated-inputs]: Remove r-howmany.

Change-Id: Ibd0ea9c9ea87c3eddc86b6d7e13198575cc10418
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
d4eec5ad55
gnu: r-clusterprofiler: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.0.

Change-Id: If7fcff996d1c7341bb9e9faa0499dd259e894afc
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
de0f76d329
gnu: r-enrichplot: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.0.

Change-Id: Ide2c42c7df2f76742242df9191b51e56b4bcfc20
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
a1f70d410a
gnu: r-enrichedheatmap: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.34.0.

Change-Id: I08fa610c96dd70460daf90f1a55adfe14119c12a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
0806704ab3
gnu: r-dose: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.0.

Change-Id: I28254605db5026df5624ff6495dbeb294624a210
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
233ed5688e
gnu: r-fgsea: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.30.0.

Change-Id: Ib82a7b868f39594f0b2211a892596d638a5805d0
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
9c78531a2a
gnu: r-fcscan: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.18.0.

Change-Id: Iaa8325f526e06c25775421023d9f05ede76a54a3
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
e82b89a306
gnu: r-anota2seq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.26.0.

Change-Id: I9cfa5e25e1b0d7c1b0ae86b3d3d99c836579f3dc
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
3187bbde7b
gnu: r-anota: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.52.0.

Change-Id: I31b0c1073f1b00b3b5d37cf7660edfd0660e4510
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
0e31943e5e
gnu: r-gosemsim: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.0.

Change-Id: I68681741553872d7928d8ef6388d9cecfb67c98f
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
f8ac2124cb
gnu: r-heatplus: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.12.0.

Change-Id: Ib77fe8736bcd1a2e893de81afe77b66fd9a6d730
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
db03970daf
gnu: r-varianttools: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.46.0.

Change-Id: Icd4ad4878d0bcd47f14fae911adae373dbcabe90
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
5fee991a00
gnu: r-tradeseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.18.0.

Change-Id: Ifb79112bed8aed760a3c100894f42554ed363e42
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
61bcb44396
gnu: r-ioniser: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.28.0.

Change-Id: Iae0b93ca195793240e5e5e9202685207868636f9
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
5180609ccf
gnu: r-linnorm: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.28.0.

Change-Id: Iaead2fd1bb4044ceccb9192f4fefb014f9a6c08b
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
7c84c1d56b
gnu: r-lumi: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.56.0.

Change-Id: I99c34bf0c24123b0be4580b3d2211c55690fa248
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
2181f4cfb6
gnu: r-lefser: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.

Change-Id: Ife3994b119fe09ae9c1cf7b6604fd20aea59332a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
8ae01e0e56
gnu: r-methylumi: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.50.0.

Change-Id: I05ada9bb2d21c34f0d89b45efd3aca05c7e4bd55
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
16704ec29d
gnu: r-missmethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.38.0.

Change-Id: I525d9a3697b621b6f9e9eb09830950653ff571a4
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
f71b4cc8c4
gnu: r-minfi: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.50.0.

Change-Id: I998622a5e1e7591819c18615c69784178710b168
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
339681b5c7
gnu: r-milor: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.0.0.
[propagated-inputs]: Add r-matrixgenerics, r-numderiv, r-rcpp, and r-rcpparmadillo.

Change-Id: I5d228959211ba4cdfbd6e8786f5fa801fdb38795
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
37ec72581f
gnu: r-microbiome: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.26.0.

Change-Id: I8ff4db42954af3dbf118f58838cae12c54998fa5
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
6040bcf1d5
gnu: r-mia: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.12.0.

Change-Id: I916224f840fe4f64b3307d09ca2bc00d18b2dcbf
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
32854c58f9
gnu: r-bumpymatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.12.0.

Change-Id: I87baf5a3ad2909cb927d363dd3a379487cc596fd
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
c990a72c67
gnu: r-bumphunter: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.46.0.

Change-Id: I171983cd2e64539fcd2d8f9a07421ff2418382f2
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
f24b16fa41
gnu: r-siggenes: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.78.0.

Change-Id: I3b25af173de02555d4be229fb5f10ec03ee81298
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
cb38250d1d
gnu: r-illuminaio: Update to 0.46.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.46.0.

Change-Id: I5c7a518114f64ae05daec56467a30076313b1bb2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
f439044038
gnu: r-geoquery: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.72.0.

Change-Id: I8042f082559a8215013f18ebfbb44b019b40c8d6
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
9ec23ccb00
gnu: r-scone: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.28.0.

Change-Id: I94c44dd6323d6ae93e91ef6fadd12de66af4c3b0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
8fc95f20db
gnu: r-scdd: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.28.0.

Change-Id: I42916e2eb192bbb1f24d039eb07d20f066887c3e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
b0499b5e7f
gnu: r-noiseq: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.48.0.

Change-Id: I2e8160ba86fadcbe804b2690977e993e6ebdb433
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
986711225a
gnu: r-sangerseqr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I8b140d95d6de99a334372116e81c13b28816a5cb
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
617d87d764
gnu: r-monocle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.32.0.

Change-Id: I44260b60dc8faea338177ffbd190efa619be4bf0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
6f44c3769a
gnu: r-mast: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.30.0.

Change-Id: Ifed0788bf9e12d4b658493a345b66d66642cb508
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
bd79bfd298
gnu: r-batchelor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.20.0.

Change-Id: I2b481fbf2d0f519782afb1338ff62b793f48b02b
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
851bebc7bd
gnu: r-residualmatrix: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.0.

Change-Id: I868b4a1c8543baf517eb7bdef1be52d854213749
2024-05-08 12:53:30 +02:00