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126917 commits

Author SHA1 Message Date
Ricardo Wurmus
0c949e4684
gnu: r-sesame: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.20.0.

Change-Id: I9ab2fb2cf0a8e65308820b0e93ed6a9c74fd11e5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
8cc5dee008
gnu: r-seqpattern: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.34.0.

Change-Id: Iaca71f59f8399e2fe27ab545b128dbc16097ac72
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
08fcb9423d
gnu: r-seqlogo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.68.0.

Change-Id: Ie71132c07d393633dfc20b2dd43f29621627a615
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
61e1d2efca
gnu: r-seqarray: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.0.

Change-Id: I0efc86ef3f9c0a798ee7cb4434092bea8aa143c5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
5fd85a62e0
gnu: r-scry: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.14.0.

Change-Id: I3138f53e6133f96ecd1efb0ccbc002a53d04b6ab
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
f5e93e8bed
gnu: r-scmap: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.24.0.

Change-Id: I894d2be7b665d64a3278027b93d36910dcc59114
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bb24565a9f
gnu: r-scdblfinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.16.0.

Change-Id: I9978ed4ba4de89ac1a97a4606498eb0bffe4b47c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
96c6e377e6
gnu: r-scannotatr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.8.0.

Change-Id: Ic38511c26633c146aeab43e51420f8cb66d81557
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bf3e9b2287
gnu: r-saturn: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.10.0.

Change-Id: I2d79ca29c9fe303fef07d046fab802932f62ef6c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0f43f41994
gnu: r-rtracklayer: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.62.0.

Change-Id: Icc6a2074292ad9426cb9eb2a50c31b307a724202
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
d08d8fa8a7
gnu: r-rtcgatoolbox: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.32.1.
[propagated-inputs]: Remove r-rcircos.

Change-Id: I1676a7c25e97fa990e855c2d26ecd268b08c8d94
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
2531eac414
gnu: r-rtcga: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.32.0.

Change-Id: I34d49096aee9329730b009209d60471f0b97ce1a
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
1e454c32d7
gnu: r-rsamtools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.18.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: I5276250da7f390358cb62e3934aedf61b4a36d67
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
68bdc0a860
gnu: r-rhdf5filters: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.0.
[native-inputs]: Remove r-biocstyle and r-rmarkdown.

Change-Id: I14e7f0e2c5986c35b9c6ca36dcb3f4127cf348aa
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0e159537dd
gnu: r-rhdf5: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I6423f6b8a92b2053039c2af7f52cbfe047d9f75f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
31d236ad8e
gnu: r-regioner: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.34.0.

Change-Id: I1b8b0d031065a2462d9a812a2ceccf58bf31ff37
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
45b4cdb52e
gnu: r-rbgl: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
42504ecfc8
gnu: r-piano: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
409d6d340d
gnu: r-pcamethods: Update to 1.94.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.94.0.

Change-Id: I67ae7bd85bf7353b038f85842b930337878ea313
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
81172ff685
gnu: r-pcaexplorer: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.28.0.

Change-Id: If0d0369c364c5c665a9cdfe71fb6ce7c4b466b40
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fab197151b
gnu: r-oscope: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.32.0.

Change-Id: Ie2f593d31f51d6fd4954d6eaa633a60e02f8cbee
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d02feac2f1
gnu: r-organismdbi: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.44.0.

Change-Id: I8c018e323daab03e758e8690b31a75c06ae7d748
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
41f7fc3ef5
gnu: r-organism-dplyr: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.30.1.

Change-Id: Ib8c833cd10fa5cc845c954b97a587279cb29127f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
23379de4c9
gnu: r-mzr: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.36.0.

Change-Id: I72f45ac3dbfea48e1327ab6bf87d5ee3eebd5b3d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
376c30b09f
gnu: r-mzid: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.40.0.

Change-Id: Ie85887d844236cc8217f7ccabec284fc4040d3f7
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
24a57583ae
gnu: r-msnid: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.36.0.

Change-Id: I2461051259efcfa92694569689a374a60224e07c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
31291d7aa1
gnu: r-msnbase: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.0.

Change-Id: If193d2756124c63fb308c62c4803378641b5a5d1
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
baa4a2629e
gnu: r-msa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.34.0.

Change-Id: Ief67a7396f222a640a3c481cc1ac66c725204e00
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
a1e7f3f4c8
gnu: r-mutationalpatterns: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.12.0.

Change-Id: Ia0dd49b80c91865677cdba3f03f6acabfb5b155f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
db457fe95f
gnu: r-muscat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.16.0.

Change-Id: Idf30d38c285a0fddd2aab924ca3017dfd25b587a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
8288c11c51
gnu: r-mmuphin: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.16.0.

Change-Id: Ib8d6583456e76abea75d08dc21aaedffe5a46053
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4b48541f9
gnu: r-mfuzz: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.62.0.

Change-Id: If08902a17ecf2be089677634ee9d348e46295245
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
6faabe3a9f
gnu: r-methylkit: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.28.0.

Change-Id: I3040045d082d80a8e1f1e68691ad3c7bc561d3d3
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7b4893ddb8
gnu: r-metaneighbor: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.22.0.

Change-Id: I24a17f7af9ccfb6a942bd0f24b187948d16bc07a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4421f7099
gnu: r-metagenomeseq: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.43.0.

Change-Id: Ia7e010752cb480bec3270f79dca748e2ccf4c53b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9be6759f41
gnu: r-mdqc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.64.0.

Change-Id: If60e2e8f16e27362542298799dd30c70f91840fe
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d485c6e39a
gnu: r-maser: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.20.0.

Change-Id: I02074e2ef18c4e2b3414d1d1ac3b325b3a28ee8b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9f7a451e6b
gnu: r-manor: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.74.0.

Change-Id: I646db2726748aefdd8f6a437571cd5e9ad613862
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
30cecc4883
gnu: r-makecdfenv: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.78.0.

Change-Id: Ia37c4a66000d5c781baf2cce4e226aeba7e01d38
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
35d10e3429
gnu: r-made4: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.76.0.

Change-Id: I867a25181c61abbb9d65b0c53dc9cbad9d96a293
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7a12d712eb
gnu: r-maaslin2: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.16.0.

Change-Id: Ib2bcd9049ffccf548295a6f1100a0b1f636f2a31
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
3e7eeef0db
gnu: r-limma: Update to 3.58.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.58.1.
[propagated-inputs]: Add r-statmod.
[native-inputs]: Add r-knitr.

Change-Id: I6f0b489fa71dfa5b359fece946493091f828795e
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
01220bcd00
gnu: r-lfa: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.2.0.

Change-Id: I940fd19d4baf1ba2b5b1a5cb35b4adfc6679a273
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
277cfebf79
gnu: r-lea: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.14.0.

Change-Id: I4a04bc3ea1e348825d40a60e12de6dffc2b2b1ef
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
c08b34c0e8
gnu: r-keggrest: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.42.0.

Change-Id: Ia2b21e89ede37cb437e894440869d5b9226f4244
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4b85fc7175
gnu: r-interactivedisplaybase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.40.0.

Change-Id: Iac0d06e6e39b840ea35dbd0b219bc084bdb61c2d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
2d821734f0
gnu: r-interactivedisplay: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.40.0.
[propagated-inputs]: Remove r-biocmanager, r-dt, and r-zlibbioc.

Change-Id: Id99c933e595dc0291fb3570cd3c8e894e2b1ed26
2023-11-03 22:49:15 +01:00