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Author SHA1 Message Date
Andreas Enge
194c7f95f1 gnu: Add FLANN. 
* gnu/packages/maths.scm (flann): New variable.
 2015-09-06 19:34:09 +02:00
Ludovic Courtès
96c4621056 gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases. 
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
  plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
  Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
 2015-08-29 01:25:08 +02:00
Ludovic Courtès
c01876b1af gnu: pspp: Update to 0.8.5. 
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
  [native-inputs]: Add TEXINFO.
 2015-07-21 01:12:34 +02:00
Alex Kost
e881752c39 gnu packages: Clean up synopses and descriptions. 
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
  gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
  gnu/packages/code.scm, gnu/packages/compression.scm,
  gnu/packages/databases.scm, gnu/packages/enchant.scm,
  gnu/packages/firmware.scm, gnu/packages/fonts.scm,
  gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
  gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
  gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
  gnu/packages/haskell.scm, gnu/packages/language.scm,
  gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
  gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
  gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
  gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
  gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
  gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
  gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
  gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
  gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
  gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
  Fix typos.  Trim long lines.  Add missing periods in the end of sentences.
  Use double spaces between sentences.  Remove trailing whitespaces.
 2015-07-18 13:05:01 +03:00
Alex Kost
7c125ce023 gnu packages: Avoid description lines with leading "(". 
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
  beginning with "(" because such lines break font-lock highlighting
  in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
 2015-07-18 13:05:01 +03:00
Eric Bavier
a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier
8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier
aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier
e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier
cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier
d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier
6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Mark H Weaver
180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Ludovic Courtès
0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver
9aafbc0c13 gnu: Add wxmaxima. 
* gnu/packages/maths.scm (wxmaxima): New variable.
 2015-05-26 10:24:11 -04:00
Mark H Weaver
77af7b2407 gnu: maxima: Update to 5.36.1. 
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
 2015-05-26 10:23:38 -04:00
Andreas Enge
7f18257bea gnu: Add lpsolve. 
* gnu/packages/maths.scm (lpsolve): New variable.
 2015-05-20 23:21:50 +02:00
Ricardo Wurmus
5b5ea159ac gnu: openblas: Disable DYNAMIC_ARCH on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
  building for MIPS.  Also make non-substitutable for MIPS.
 2015-05-20 13:30:24 +02:00
Ricardo Wurmus
ecf28847b2 gnu: openblas: Update to 0.2.14. 
* gnu/packages/maths.scm (openblas): Update to 0.2.14.
 2015-05-15 13:53:30 +02:00
Eric Bavier
1ec78e9d71 gnu: octave: Add fftw, arpack, and glu inputs. 
* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
  and glu.
  [description]: Wrap to 80 columns.
 2015-05-11 10:10:00 -05:00
Ricardo Wurmus
af5b817ea9 gnu: openblas: build for all supported CPUs. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
  make flags.  Remove "#:substitutable? #f".
 2015-03-26 07:54:55 +01:00
Mark H Weaver
87db65507e Remove unused patchelf inputs. 
* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
  unused patchelf from native-inputs.
 2015-03-23 13:30:06 -04:00
Ricardo Wurmus
61a529b421 gnu: Add double-conversion. 
* gnu/packages/maths.scm (double-conversion): New variable.
 2015-03-23 10:38:06 +01:00
Ricardo Wurmus
2742f87e17 gnu: Add SuiteSparse. 
* gnu/packages/maths.scm (suitesparse): New variable.
 2015-03-23 10:19:45 +01:00
Ricardo Wurmus
e73b49fbd6 gnu: Add openblas. 
* gnu/packages/maths.scm (openblas): New variable.
 2015-03-23 10:08:28 +01:00
Ludovic Courtès
166191b377 gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'. 
* gnu/packages/avr.scm, gnu/packages/compression.scm,
  gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
  gnu/packages/databases.scm, gnu/packages/firmware.scm,
  gnu/packages/flex.scm, gnu/packages/fontutils.scm,
  gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
  gnu/packages/hugs.scm, gnu/packages/image.scm,
  gnu/packages/linux.scm, gnu/packages/mail.scm,
  gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
  gnu/packages/python.scm, gnu/packages/rdf.scm,
  gnu/packages/ssh.scm, gnu/packages/tcl.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
  instead of 'bsd-style'.
 2015-03-14 19:27:14 +01:00
Andreas Enge
c12efc72cf gnu: Add glm. 
* gnu/packages/maths.scm (glm): New variable.

Co-authored-by: John Darrington <john@darrington.wattle.id.au>
 2015-03-14 17:39:58 +01:00
Andreas Enge
12ed1216de gnu: hdf5: Add input zlib. 
* gnu/packages/maths.scm (hdf5): Add input zlib.
 2015-03-13 00:15:47 +01:00
Andreas Enge
40029cbe30 gnu: hdf5: Combine all outputs into one. 
* gnu/packages/maths.scm (hdf5): Combine the outputs "out", "bin", "lib" and
  "include" into "out".
  (gmsh, octave): Adapt list of inputs.
 2015-03-12 23:59:49 +01:00
Ricardo Wurmus
e62be58fc3 gnu: Add openspecfun. 
* gnu/packages/maths.scm (openspecfun): New variable.
 2015-03-10 23:39:12 +01:00
Ricardo Wurmus
e1605e36a8 gnu: Add openlibm. 
* gnu/packages/maths.scm (openlibm): New variable.
 2015-03-10 23:38:55 +01:00
Ricardo Wurmus
279663efa5 gnu: Add muparser. 
* gnu/packages/maths.scm (muparser): New variable.
 2015-03-05 08:01:15 +01:00
Ludovic Courtès
1289062522 Merge branch 'core-updates'. 2015-03-04 14:07:23 +01:00
宋文武
32158110b0 gnu: octave: Update to 3.8.2. 
* gnu/packages/maths.scm (octave): Update to 3.8.2.
 2015-03-04 16:45:23 +08:00
Mark H Weaver
f586c87705 gnu: Add 'file-name' fields for github source tarballs without a name. 
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
 2015-02-28 09:49:01 -05:00
Ricardo Wurmus
865a69ddc8 gnu: Add arpack-ng. 
* gnu/packages/maths.scm (arpack-ng): New variable.
 2015-02-20 14:26:48 +01:00
Mark H Weaver
85f4190221 gnu: gmsh: Add glu to inputs. 
* gnu/packages/maths.scm (gmsh): Add glu to inputs.
 2014-12-27 11:18:29 -05:00
Federico Beffa
01480b9e1c gnu: atlas: Remove MIPS from 'supported-systems'. 
* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
 2014-12-08 09:54:34 +01:00
Federico Beffa
af89a66735 gnu: atlas: Try to fix build on MIPS. 
* gnu/packages/maths.scm (atlas): Add MIPS specific configure flags.
 2014-11-23 15:37:29 +01:00
Ludovic Courtès
f15615b119 gnu: atlas: Make it non-substitutable. 
Suggested by Federico Beffa <beffa@ieee.org>.

* gnu/packages/maths.scm (atlas)[arguments]: Pass #:substitutable? #f.
  [description]: Adjust accordingly.
 2014-10-28 10:17:55 +01:00
Eric Bavier
35b9e4232c gnu: Some cleanup based on lint checkers. 
* gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm,
  gnu/packages/apr.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm,
  gnu/packages/base.scm, gnu/packages/calcurse.scm, gnu/packages/cdrom.scm,
  gnu/packages/check.scm, gnu/packages/compression.scm, gnu/packages/cook.scm,
  gnu/packages/crypto.scm, gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm,
  gnu/packages/doxygen.scm, gnu/packages/dwm.scm, gnu/packages/elf.scm,
  gnu/packages/emacs.scm, gnu/packages/feh.scm, gnu/packages/file.scm,
  gnu/packages/fish.scm, gnu/packages/flex.scm, gnu/packages/fltk.scm,
  gnu/packages/fontutils.scm, gnu/packages/games.scm, gnu/packages/gcal.scm,
  gnu/packages/gcc.scm, gnu/packages/geeqie.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gperf.scm, gnu/packages/grub.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm,
  gnu/packages/hurd.scm, gnu/packages/icu4c.scm, gnu/packages/image.scm,
  gnu/packages/imagemagick.scm, gnu/packages/irssi.scm, gnu/packages/kde.scm,
  gnu/packages/libdaemon.scm, gnu/packages/libevent.scm,
  gnu/packages/libidn.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm,
  gnu/packages/lout.scm, gnu/packages/lsh.scm, gnu/packages/lsof.scm,
  gnu/packages/lua.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm,
  gnu/packages/mp3.scm, gnu/packages/netpbm.scm, gnu/packages/noweb.scm,
  gnu/packages/ocaml.scm, gnu/packages/openssl.scm, gnu/packages/pcre.scm,
  gnu/packages/pdf.scm, gnu/packages/pkg-config.scm,
  gnu/packages/pretty-print.scm, gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/scheme.scm, gnu/packages/scrot.scm,
  gnu/packages/sdl.scm, gnu/packages/skribilo.scm, gnu/packages/ssh.scm,
  gnu/packages/stalonetray.scm, gnu/packages/tcl.scm, gnu/packages/tcsh.scm,
  gnu/packages/telephony.scm, gnu/packages/texlive.scm, gnu/packages/tor.scm,
  gnu/packages/valgrind.scm, gnu/packages/version-control.scm,
  gnu/packages/vim.scm, gnu/packages/vpn.scm, gnu/packages/w3m.scm,
  gnu/packages/web.scm, gnu/packages/wordnet.scm, gnu/packages/xiph.scm,
  gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/packages/zile.scm,
  gnu/packages/zip.scm, gnu/packages/zsh.scm [synopsis, description]: Adjust
  according to lint checkers.
* gnu/packages/fltk.scm (fltk)[source]: Wrap long line in uri.
* /gnu/packages/xiph.scm (libogg, libtheora, vorbis-tools)[source]: Same.
 2014-10-26 13:03:53 -05:00
Federico Beffa
ec322be248 gnu: Add ATLAS. 
* gnu/packages/maths.scm (atlas): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-10-26 15:16:06 +01:00
John Darrington
3dcd78109c gnu: pspp: Upgrade to 0.8.4. 
* gnu/packages/maths.scm (pspp): Upgrade to 0.8.4.
 2014-10-03 19:52:50 +02:00
Mathieu Lirzin
182d6311c2 gnu: Add dionysus. 
* gnu/packages/maths.scm (dionysus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-29 00:16:28 +02:00
Federico Beffa
f36afe4d05 gnu: maxima: Install .el files in the right place, and help find Gnuplot. 
* gnu/packages/maths.scm (maxima): Remove Tcl from 'inputs'.  Add
  'post-install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-27 11:22:58 +02:00
Federico Beffa
df354a771d gnu: maxima: Update to 5.34.1 and add dependencies. 
* gnu/packages/maths.scm (maxima): Update to 5.34.1 which fixes a bug in
  the plotting capabilities present in the previous version.  Add Gnuplot
  and Tcl/Tk to 'inputs'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-24 09:35:44 +02:00
Mark H Weaver
b5b73a8269 Use #:prefix instead of #:renamer with 'symbol-prefix-proc'. 
* gnu/packages/abiword.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm,
  gnu/packages/backup.scm, gnu/packages/bittorrent.scm,
  gnu/packages/boost.scm, gnu/packages/compression.scm,
  gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/dc.scm, gnu/packages/emacs.scm,
  gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/geeqie.scm,
  gnu/packages/ghostscript.scm, gnu/packages/gimp.scm,
  gnu/packages/gkrellm.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/gv.scm, gnu/packages/image.scm,
  gnu/packages/indent.scm, gnu/packages/inkscape.scm,
  gnu/packages/lesstif.scm, gnu/packages/links.scm, gnu/packages/lisp.scm,
  gnu/packages/lsh.scm, gnu/packages/lsof.scm, gnu/packages/maths.scm,
  gnu/packages/mp3.scm, gnu/packages/openssl.scm, gnu/packages/ots.scm,
  gnu/packages/pciutils.scm, gnu/packages/pcre.scm, gnu/packages/pdf.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/slim.scm,
  gnu/packages/ssh.scm, gnu/packages/texlive.scm, gnu/packages/vim.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wv.scm,
  gnu/packages/xiph.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm,
  guix/build/cmake-build-system.scm, guix/build/perl-build-system.scm,
  guix/build/python-build-system.scm, guix/download.scm: Replaces uses of
  #:renamer and 'symbol-prefix-proc' with #:prefix.
 2014-09-23 18:52:29 -04:00
Alex Kost
516e93f8a6 gnu: Fix typos. 
* gnu/packages/cdrom.scm (cdparanoia): Double space in description.
* gnu/packages/maths.scm (hdf5): Double space in synopsis.
 2014-09-19 15:31:19 +04:00
Ludovic Courtès
9e771e3bb6 gnu: Adjust synopses as recommended by 'guix lint'. 
Remove leading articles and trailing periods in package synopses.
 2014-09-13 15:50:30 +02:00
Ludovic Courtès
c5779c931b gnu: Synchronize GNU package descriptions with upstream. 
These are mostly two-space-after-end-of-sentence-period changes
resulting from commit 3a09e1d2.
 2014-09-13 15:36:07 +02:00
Andreas Enge
66fdf54587 gnu: glpk: Update to 4.55. 
* gnu/packages/maths.scm (glpk): Update to 4.55.
 2014-09-11 16:43:08 +02:00
Ludovic Courtès
c3cf9d36e4 Merge branch 'bug-17853' 2014-07-13 23:44:55 +02:00
John Darrington
8731e52749 gnu: Add maxima. 
* gnu/packages/maths.scm (maxima): New variable.
 2014-07-05 16:16:03 +02:00
Eric Bavier
221ed17a58 gnu: Adjust yet more packages to GLib "bin" split. 
* gnu/packages/maths.scm (pspp): Add glib:bin to 'native-inputs'.
* gnu/packages/gnome.scm (gconf, gnome-vfs, libgnome, libgnomeui,
  libbonoboui): Likewise.
  (libbonobo, libgnomecanvas, libgnomeprint): Comment on why glib:bin.
* gnu/packages/gtk.scm (gtksourceview): Likewise.
 2014-07-02 13:32:59 -05:00
Andreas Enge
93c3de921a gnu: hdf5: Fix source download location. 
* gnu/packages/maths.scm (hdf5): Use "release" directory and not the "current"
    directory for the source, which does not break on new upstream releases.
 2014-05-28 16:04:08 +02:00
John Darrington
5698b8b82c gnu: Add gsegrafix and dependent libraries. 
* gnu/packages/math.scm (gsegrafix): New variable.
* gnu/packages/gtk.scm (pangox-compat): New variable.
* gnu/packages/gnome.scm (libidl, orbit2, libbonobo, gconf, gnome-mime-data,
  gnome-vfs, libgnome, libart-lgpl, libgnomecanvas, libgnomeui, libglade,
  libgnomeprint, libgnomeprintui, libbonoboui): New variables.
 2014-05-26 18:19:55 +02:00
Eric Bavier
16ecf3ff4a gnu: Edit synopses of petsc packages. 
* gnu/packages/maths.scm (petsc) [synopsis]: Shorten.
  (petsc-complex,petsc-openmpi,petsc-complex-openmpi) [synopsis]:
  Repeat synopsis from petsc package with extensions.  [description]: Remove.
 2014-05-20 09:53:19 -05:00
Eric Bavier
a54aefead6 gnu: Add superlu-dist package. 
* gnu/packages/maths.scm (superlu-dist): New variable.
* gnu/packages/patches/superlu-dist-scotchmetis.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
Eric Bavier
6acb4adb34 gnu: Add pt-scotch package. 
* gnu/packages/maths.scm (pt-scotch): New variable.
 2014-05-19 00:15:11 -05:00
Eric Bavier
f8ed036a31 gnu: Add scotch package. 
* gnu/packages/maths.scm (scotch): New variable.
* gnu/packages/patches/scotch-test-threading.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
John Darrington
7e0c23fb3e gnu: pspp: Upgrade to 0.8.3 
* gnu/packages/maths.scm (pspp): Update to 0.8.3.
 2014-05-11 13:42:49 +02:00
Eric Bavier
d8c7eeb996 gnu: Add petsc-openmpi. 
* gnu/packages/maths.scm (petsc-openmpi): New variable.
  (petsc-complex-openmpi): New variable.
 2014-05-08 12:42:17 -05:00
Eric Bavier
10b11968c8 gnu: petsc: Clean some more leaked chroot references 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub some
  config-generated header files before build.  Only remove files if
  they exist.
 2014-05-08 12:42:17 -05:00
Ludovic Courtès
0e2672aee3 gnu: Add missing import in (gnu packages maths). 
* gnu/packages/maths.scm: Use (guix utils), which was needed since
  b9100e2f.
 2014-05-04 11:15:30 +02:00
Eric Bavier
f5d5a346db gnu: Add missing copyright line 
* gnu/packages/maths.scm: Add copyright line missing from 3de01d3.
 2014-05-02 14:25:17 -05:00
Eric Bavier
f258212df5 gnu: petsc: Add input superlu. 
* gnu/packages/maths.scm (petsc): Configure with superlu support.
 2014-05-02 14:25:17 -05:00
Eric Bavier
183e44ae44 gnu: Add superlu 
* gnu/packages/maths.scm (superlu): New variable
 2014-05-02 14:25:17 -05:00
Eric Bavier
b9100e2f11 gnu: Add petsc 
* gnu/packages/maths.scm (petsc): New variable.
  (petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-01 15:27:30 -05:00
Eric Bavier
edf684ef99 gnu: gmsh: Fix typos 
* gnu/packages/maths.scm (gmsh): Fix typo and space aftern
  end-of-sentence.
 2014-04-30 14:56:52 -05:00
Eric Bavier
3de01d3fa1 gnu: Add gmsh 
* gnu/packages/maths.scm (gmsh): New variable
 2014-04-30 11:39:31 -05:00
Andreas Enge
06ed59825e guix: cmake: Add input and package libraries to the rpath, and adapt package 
definitions accordingly.

* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2014-04-27 11:35:26 +02:00
Eric Bavier
57e544e8f7 gnu: lapack: Augment library rpath 
* gnu/packages/maths.scm (lapack) [arguments]: New post-installation
  phase to augment the rpath of installed libraries.
 2014-04-08 23:10:42 -05:00
Eric Bavier
8de3a57821 gnu: lapack: Build shared libraries 
* gnu/packages/maths.scm (lapack) [arguments]: Add -DBUILD_SHARED_LIBS to
  #:configure-flags
 2014-04-07 14:44:57 -05:00
Ludovic Courtès
574e86f9cf gnu: Synchronize synopses and descriptions with the Womb. 
* gnu/packages/gnunet.scm (gnunet): Synchronize description and synopsis
  with upstream.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/grub.scm (grub): Likewise.
* gnu/packages/pretty-print.scm (enscript): Likewise.
 2014-04-06 21:18:13 +02:00
Andreas Enge
983815c8b9 gnu: units: Upgrade to 2.11. 
* gnu/packages/maths.scm (units): Upgrade to 2.11.
 2014-04-03 20:54:16 +02:00
Andreas Enge
1f1c0aff26 gnu: glpk: Upgrade to 4.54. 
* gnu/packages/maths.scm (glpk): Upgrade to 4.54.
 2014-04-03 20:18:25 +02:00
Eric Bavier
d4bf49b140 gnu: Remove unused lambda arguments and prefer separate phases over 
augmented phases.

* gnu/packages/compression.scm (sharutils) [arguments]: Remove unused
  lambda args.
* gnu/packages/gl.scm (mesa) [arguments]: Same
* gnu/packages/fltk.scm [arguments]: Same.  Substitute const check
  phase with #:tests? #f.  Add pre-configure phase.
* gnu/packages/ghostscript.scm (ghostscript) [arguments]: Put makefile
  patches in separate phase.  Put so steps oinseparate phases.
* gnu/packages/glib.scm (gobject-introspection) [arguments]: Remove
  unused lambda args.  Put patches in pre-configure phase.
* gnu/packages/gnupg.scm (gnupg) [arguments]: Put patch in
  pre-configure phase.
  (pius) [arguments]: Delete const #t configure and build phases.
  (signing-party) [arguments]: Factor patches into post-unpack phase.
  (paperkey) [arguments]: Remove unused lambda args.  Factor out
  patches into pre-check phase.
* gnu/packages/icu4c.scm [arguments]: Change source dir after standard
  unpack phase.  Factor configure patches into pre-configure phase.
* gnu/packages/lsof.scm [arguments]: Remove unused lambda args.
  Remove unnecessary apply.
* gnu/packages/lvm.scm (lvm2) [arguments]: Factor out patches into
  pre-configure phase.
* gnu/packages/libtiff.scm [arguments]: Same
* gnu/packages/maths.scm (hdf5) [arguments]: Same
* gnu/packages/gtk.scm (gtk+-2) [arguments]: Same
* gnu/packages/mp3.scm (libmad) [arguments]: Same
  (id3lib) [arguments]: Same
* gnu/packages/python.scm (python-2) [arguments]: Same
* gnu/packages/texlive.scm (texlive) [arguments]: Same
* gnu/packages/pretty-print.scm (a2ps) [arguments]: Same
  (trueprint) [arguments]: Same
  (source-highlight) [arguments]: Same.  Remove unused lambda args.
* gnu/packages/netpbm.scm [arguments]: Remove unused lambda args.
  Factor out test patches into pre-check phase.  Condense calls to
  substitute*
* gnu/packages/openldap.scm [arguments]: Factor out libtool copy into
  post-configure phases. [synopsis] Remove package name.
* gnu/packages/ssh.scm (openssh) [arguments]: Factor out patches into
  separate phases.
* gnu/packages/tcsh.scm [arguments]: Factor out test patches into
  pre-check phase.
* gnu/packages/version-control.scm (git) [arguments]: Factor out
  patches into post-configure phase.
* gnu/packages/vim.scm [arguments]: Same. [synopsis] Remove package
  name.
* gnu/packages/vpn.scm (openconnect) [arguments]: Put configure flags
  in #:configure-flags
 2014-03-31 10:34:17 -05:00
John Darrington
7ee3f1a208 gnu: Add hdf5. 
* gnu/packages/maths.scm (hdf5): New variable.
* gnu/packages/maths.scm (octave): New input hdf5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-02-16 23:35:37 +01:00
John Darrington
668c06acfc gnu: Add GNU Octave. 
* gnu/packages/maths.scm (octave): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-30 22:00:55 +01:00
John Darrington
73fed4f868 gnu: Add gnuplot 
* gnu/packages/maths.scm (gnuplot): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-26 21:16:55 +01:00
Andreas Enge
566146abba gnu: lapack: Update to 3.5.0. 
* gnu/packages/maths.scm (lapack): Update to 3.5.0.
 2014-01-26 13:04:03 +01:00
John Darrington
e7d6f7bfa0 gnu: pspp: Upgrade to 0.8.2 
* gnu/packages/maths.scm (pspp): Update to 0.8.2.
* gnu/packages/patches/pspp-tests.patch: Deleted.
* gnu-system.am: Removed pspp-tests.patch from the manifest.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-15 21:27:41 +01:00
John Darrington
e6a5ce8e67 gnu: pspp: Enabled build of the gui 
* gnu/packages/math.scm (pspp): Removed the --without-gui flag
and added the necessary inputs to build it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2013-12-02 13:51:02 +01:00
Ludovic Courtès
79c311b81c gnu: Synchronize descriptions with 'gnumaint'. 2013-12-01 22:33:23 +01:00
Ludovic Courtès
1dba64079c gnu: gettext: Rename binding to 'gnu-gettext'. 
* gnu/packages/gettext.scm (gettext): Rename to...
  (gnu-gettext): ... this.  This is used to work around the circular
  dependency introduced in commit c42a4b7, which users with a #:renamer
  cannot cope with.
* gnu/packages/acl.scm, gnu/packages/attr.scm, gnu/packages/cdrom.scm,
  gnu/packages/fdisk.scm, gnu/packages/gkrellm.scm, gnu/packages/glib.scm,
  gnu/packages/gnunet.scm, gnu/packages/grub.scm, gnu/packages/linux.scm,
  gnu/packages/maths.scm, gnu/packages/nano.scm, gnu/packages/parted.scm,
  gnu/packages/system.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/w3m.scm, gnu/packages/wget.scm:
  Adjust accordingly.
 2013-11-20 22:12:49 +01:00
Andreas Enge
f392980041 gnu: pspp: Add input cairo. 
* gnu/packages/maths.scm (pspp): Add cairo and further necessary inputs.
* gnu/packages/patches/pspp-tests.patch: New file, thanks to
  John Darrington <john@darrington.wattle.id.au>.
* gnu-system.am (dist_patch_DATA): Register patch.
 2013-11-18 21:12:27 +01:00
Ludovic Courtès
6a9957545c gnu: lapack: Use origin snippet to remove the non-free files. 
* gnu/packages/maths.scm (lapack): Add 'snippet' field with contents of
  former 'remove-non-free-files' phase; remove that phase.
 2013-11-07 23:07:45 +01:00
Nikita Karetnikov
da95c8170a gnu: Add LAPACK. 
* gnu/packages/maths.scm (lapack): New variable.
 2013-11-07 08:20:11 +00:00
Andreas Enge
b92eee75b1 gnu: Add GLPK. 
* gnu/packages/maths.scm (glpk): New variable.
 2013-10-22 20:24:33 +02:00
Andreas Enge
487da56570 gnu: gsl: Update to 1.16. 
* gnu/packages/maths.scm (gsl): Update to 1.16, disable parallel tests
    leading to a failure in vector.
 2013-10-13 16:26:12 +02:00
Ludovic Courtès
a22dc0c49a Synchronize package descriptions with the Womb. 
* gnu/packages/algebra.scm,
  gnu/packages/aspell.scm,
  gnu/packages/autotools.scm,
  gnu/packages/base.scm,
  gnu/packages/bash.scm,
  gnu/packages/bison.scm,
  gnu/packages/cdrom.scm,
  gnu/packages/cflow.scm,
  gnu/packages/compression.scm,
  gnu/packages/cpio.scm,
  gnu/packages/cppi.scm,
  gnu/packages/ddrescue.scm,
  gnu/packages/dejagnu.scm,
  gnu/packages/ed.scm,
  gnu/packages/emacs.scm,
  gnu/packages/fdisk.scm,
  gnu/packages/freeipmi.scm,
  gnu/packages/gawk.scm,
  gnu/packages/gcal.scm,
  gnu/packages/gcc.scm,
  gnu/packages/gdb.scm,
  gnu/packages/gdbm.scm,
  gnu/packages/gettext.scm,
  gnu/packages/ghostscript.scm,
  gnu/packages/global.scm,
  gnu/packages/gnunet.scm,
  gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm,
  gnu/packages/gperf.scm,
  gnu/packages/gprolog.scm,
  gnu/packages/groff.scm,
  gnu/packages/grub.scm,
  gnu/packages/gsasl.scm,
  gnu/packages/guile.scm,
  gnu/packages/gv.scm,
  gnu/packages/help2man.scm,
  gnu/packages/idutils.scm,
  gnu/packages/indent.scm,
  gnu/packages/less.scm,
  gnu/packages/libidn.scm,
  gnu/packages/libsigsegv.scm,
  gnu/packages/libunistring.scm,
  gnu/packages/lightning.scm,
  gnu/packages/linux.scm,
  gnu/packages/lsh.scm,
  gnu/packages/m4.scm,
  gnu/packages/mail.scm,
  gnu/packages/maths.scm,
  gnu/packages/multiprecision.scm,
  gnu/packages/nano.scm,
  gnu/packages/ncurses.scm,
  gnu/packages/nettle.scm,
  gnu/packages/ocrad.scm,
  gnu/packages/oggvorbis.scm,
  gnu/packages/parted.scm,
  gnu/packages/plotutils.scm,
  gnu/packages/pth.scm,
  gnu/packages/readline.scm,
  gnu/packages/recutils.scm,
  gnu/packages/rush.scm,
  gnu/packages/scheme.scm,
  gnu/packages/screen.scm,
  gnu/packages/shishi.scm,
  gnu/packages/smalltalk.scm,
  gnu/packages/system.scm,
  gnu/packages/texinfo.scm,
  gnu/packages/time.scm,
  gnu/packages/unrtf.scm,
  gnu/packages/version-control.scm,
  gnu/packages/wdiff.scm,
  gnu/packages/wget.scm,
  gnu/packages/which.scm,
  gnu/packages/xnee.scm,
  gnu/packages/zile.scm: Change value of the 'description' field to that
  of the Womb.
 2013-10-09 16:14:23 +02:00
Ludovic Courtès
d6f10ca3fe gnu: units: Update to 2.02. 
* gnu/packages/maths.scm (units): Update to 2.02.
 2013-09-27 22:05:08 +02:00
Andreas Enge
78c7e3449f gnu: pspp: Update to 0.8.1. 
* gnu/packages/maths.scm (pspp): Update to 0.8.1.
 2013-09-25 11:08:16 +02:00
Andreas Enge
71e0f28856 gnu: gsl: Disable numerically unstable test on i686. 
* gnu/packages/maths.scm (gsl): Disable test.
 2013-08-31 12:18:53 +02:00
Andreas Enge
88bd1804a2 gnu: gsl: Move from module algebra to maths. 
* gnu/packages/algebra.scm (gsl): Move variable from here...
* gnu/packages/maths.scm (gsl): ...to here.
 2013-08-29 15:42:52 +02:00
Andreas Enge
c9dfa3c721 gnu: Add pspp. 
* gnu/packages/maths.scm (pspp): New variable.
* THANKS: Thank John Darrington for help with debugging.
 2013-08-24 15:11:02 +02:00
Andreas Enge
8f8b24512a gnu: Add units. 
* gnu/packages/maths.scm: New module.
* gnu-system.am (GNU_SYSTEM_MODULES): Add module.
 2013-08-24 10:51:56 +02:00