Ricardo Wurmus
ca6e432089
gnu: r-edger: Update to 4.0.12.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.
Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
4df162962d
gnu: r-biostrings: Update to 2.70.2.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.
Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.
Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
6f11ca52f1
gnu: r-robustbase: Update to 0.99-2.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2.
Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
ef5640f763
gnu: r-viridis: Update to 0.6.5.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5.
Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
c72ceba47f
gnu: r-commonmark: Update to 1.9.1.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1.
Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
e6847d7a2f
gnu: r-data-table: Update to 1.15.0.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0.
Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
71936c6145
gnu: r-tfruns: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2.
Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
08d6f49857
gnu: r-spatstat-geom: Update to 3.2-8.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8.
Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
281db78112
gnu: r-iheatmapr: Update to 0.7.1.
...
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1.
Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
2435d457e8
gnu: r-emoa: Update to 0.5-2.
...
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2.
Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
6bde30b814
gnu: r-tidygraph: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1.
Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
a03ad38b2f
gnu: r-xgboost: Update to 1.7.7.1.
...
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1.
Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
50e728fbab
gnu: r-yulab-utils: Update to 0.1.4.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4.
Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
48f41d06e8
gnu: r-bqtl: Update to 1.0-36.
...
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36.
Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
2bb1d89f97
gnu: r-listenv: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1.
Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
8bad30c244
gnu: r-phylobase: Update to 0.8.12.
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* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12.
Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
b7e3c82000
gnu: r-densityclust: Update to 0.3.3.
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* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
02931399e8
gnu: r-interp: Update to 1.1-6.
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* gnu/packages/cran.scm (r-interp): Update to 1.1-6.
Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
8b0a49ad4e
gnu: r-zip: Update to 2.3.1.
...
* gnu/packages/cran.scm (r-zip): Update to 2.3.1.
Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
51d7fae43a
gnu: r-nestedcv: Update to 0.7.4.
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* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4.
[propagated-inputs]: Add r-rhpcblasctl.
Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
775ae73c3d
gnu: r-laeken: Update to 0.5.3.
...
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.
Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
f3af65b8d0
gnu: r-sp: Update to 2.1-3.
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* gnu/packages/cran.scm (r-sp): Update to 2.1-3.
Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
5701d13103
gnu: r-powerlaw: Update to 0.80.0.
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* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.
Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
854d1be754
gnu: r-httpuv: Update to 1.6.14.
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* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.
Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
51ca656726
gnu: r-ga: Update to 3.2.4.
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* gnu/packages/cran.scm (r-ga): Update to 3.2.4.
Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1.
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* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.
Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
1541c1bb17
gnu: r-rjava: Update to 1.0-11.
...
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.
Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
2024-01-30 15:48:08 +01:00
Ricardo Wurmus
1bb0d6355c
gnu: r-catdata: Update to 1.2.4.
...
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.
Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
2024-01-30 15:41:54 +01:00
Ricardo Wurmus
c3e2892558
gnu: r-r-devices: Update to 2.17.2.
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* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.
Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
2024-01-30 15:41:07 +01:00
Ricardo Wurmus
67c1a96196
gnu: r-igraph: Update to 2.0.1.1.
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* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.
Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
2024-01-30 15:36:03 +01:00
Ricardo Wurmus
788657b62d
gnu: r-antiword: Update to 1.3.3.
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* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.
Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
2024-01-30 15:31:07 +01:00
Ricardo Wurmus
a4e75305e2
gnu: r-sapa: Patch call of dstebz routine.
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* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.
Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
a874d44053
gnu: r-with-tests: Prevent compression of libraries.
...
Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29b
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
afe677a623
gnu: r-minimal, r-with-tests: Use G-expressions.
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* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.
Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
2024-01-30 15:16:20 +01:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures.
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* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.
Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30 13:43:32 +02:00
Efraim Flashner
7bf98da98b
gnu: libhdate: Fix pkg-config file.
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* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust
the pkg-config file to have the correct prefix.
Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
2024-01-30 09:25:32 +02:00
Ian Eure
144c95032e
gnu: emacspeak: Update to 59.0.
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* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0.
[source]: Switch to git-fetch.
Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-30 00:40:15 +01:00
Kiran Shila
cdadef6409
gnu: Add python-hdbscan.
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* gnu/packages/machine-learning.scm (python-hdbscan): New variable.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I13a78dd795490e6d4a8486741e2d5281605b7bb9
2024-01-29 22:58:35 +00:00
Troy Figiel
cde0adaacd
gnu: Add python-pyjanitor.
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* gnu/packages/python-science.scm (python-pyjanitor): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:40:59 +00:00
Troy Figiel
343f4f1d70
gnu: Add python-unyt.
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* gnu/packages/python-science.scm (python-unyt): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:12:12 +00:00
David Thompson
370b79b4f5
gnu: guile-next: Update to commit fb1f5e2.
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* gnu/packages/guile.scm (guile-next): Update to commit fb1f5e2.
Change-Id: Ia699bf7bf950b8780366146508eec566a738fb80
2024-01-29 13:38:35 -05:00
Maxim Cournoyer
21e4d6cd69
gnu: mumi: Update to 0.0.8.
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* gnu/packages/mail.scm (mumi): Update to 0.0.8.
Change-Id: I0342f3cfb1b257d7beb25a5d9d0732895f88ec35
2024-01-29 10:23:15 -05:00
Maxim Cournoyer
1e0ca05c82
gnu: mumi: Update to 0.0.7.
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* gnu/packages/mail.scm (mumi): Update to 0.0.7.
Change-Id: Ia9280574a6774e27f8ab0b4654997b6518c561d2
2024-01-29 10:16:07 -05:00
Maxim Cournoyer
2c5293afff
gnu: lugaru: Apply patch fixing sound.
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* gnu/packages/patches/lugaru-fix-sound.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (lugaru) [source]: Update source URL.
Apply patch.
[arguments]: Use gexps.
[inputs]: Remove labels and sort.
Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
2024-01-28 21:03:31 -05:00
Sharlatan Hellseher
f74789cd54
teams: go: Add more related files to the scope.
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* etc/teams.scm (go): Add "gnu/packages/configuration-management.scm",
"gnu/packages/golang-crypto.scm", "gnu/packages/golang-web.scm",
"gnu/packages/syncthing.scm", "gnu/packages/terraform.scm". Sort list
alphabetically.
Change-Id: I56ce5bd21e487e5dbe2d84aa1d83e3239268fb71
2024-01-28 23:40:23 +00:00
Sharlatan Hellseher
9649f5e928
gnu: go-github-com-quic-go-qtls-go1-20: Sort package alphabetically.
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* gnu/packages/golang-crypto.scm (go-github-com-quic-go-qtls-go1-20):
Sort package alphabeticaly to consist the style.
Change-Id: Ib9d1e037dc1172b33a80dc4b40c785b53a2a0586
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
ee76f7c279
gnu: go-github-com-99designs-go-keyring: Adjust inputs.
...
This package does not use GPG or password-store internally and is only
used as a dependency for aws-vault.
* gnu/packages/golang-crypto.scm (go-github-com-99designs-go-keyring):
Swap native-inputs to propagated-inputs.
[propagated-inputs]: Remove gnupg and password-store.
Change-Id: If5f57f656402058960df416bad25a76fa1b70718
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
232ed89d43
gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check).
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* gnu/packages/check.scm (go-github.com-smartystreets-goconvey): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.
Change-Id: I19d8db6e3b07e1d165396c0498e328b70b2cc760
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
8882af2572
gnu: go-github.com-smartystreets-assertions: Move to (gnu packages golang-check).
...
* gnu/packages/check.scm (go-github.com-smartystreets-assertions): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.
Change-Id: Ia90bbe984fe19dd48d9df91364a7ecf2bf8bd37f
2024-01-28 23:21:06 +00:00
