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Author SHA1 Message Date
Ricardo Wurmus
44fa14dfa3
gnu: r-topgo: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.34.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
8a0d57d26e
gnu: r-genomicfeatures: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.1.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
c5f1d1ce80
gnu: r-rtracklayer: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
52b95337e8
gnu: r-genomicalignments: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
9fd4350e5a
gnu: r-summarizedexperiment: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.12.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
de4c38f80b
gnu: r-delayedarray: Update to 0.8.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.8.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
7f3778eb06
gnu: r-rsamtools: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
4804c59227
gnu: r-biostrings: Update to 2.50.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
cd8828918f
gnu: r-biocparallel: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
3359d44210
gnu: r-biomart: Update to 2.38.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.38.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
3986e0dee5
gnu: r-annotationdbi: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.44.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
5b82e12a99
gnu: r-biobase: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.42.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus
8d3906a95f
gnu: r-genomicranges: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.34.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
fb10fb72ba
gnu: r-xvector: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.22.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
78d2ffdc73
gnu: r-limma: Update to 3.38.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.2.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
ca2945c316
gnu: r-variantannotation: Update to 1.28.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
08cd2d5b59
gnu: r-edger: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
12871693fe
gnu: r-genomeinfodb: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
9a8dd51979
gnu: r-iranges: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
a037453554
gnu: r-s4vectors: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
70f2758f71
gnu: r-dnacopy: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.56.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
a127d3522a
gnu: r-bioccheck: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.18.0.
[propagated-inputs]: Add r-knitr and r-biocmanager; remove r-biocinstaller.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
6087f5ce37
gnu: r-biocstyle: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.10.0.
[propagated-inputs]: Add biocmanager.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
c8dbb5fa7f
gnu: r-biocviews: Update to 1.50.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
36d7d823a4
gnu: r-biocinstaller: Update to 1.32.1. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.32.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
2f28ffd81d
gnu: r-biocgenerics: Update to 0.28.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.28.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
5c996cab4c
gnu: r-grohmm: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
bf25930cf6
gnu: r-systempiper: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
9adf78c21e
gnu: r-shortread: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.40.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
4a4b5b8537
gnu: r-gostats: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.48.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus
95ae5acc89
gnu: r-category: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
6dfb0b25ae
gnu: r-gseabase: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
19a6149190
gnu: r-rbgl: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
2ff6604a53
gnu: r-annotationforge: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.24.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
856444a0a1
gnu: r-dexseq: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
b5c552e654
gnu: r-deseq2: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
85fb33a051
gnu: r-genefilter: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.64.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
f4a95a0d15
gnu: r-geneplotter: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
dadd682c53
gnu: r-copynumber: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.22.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
090d4c0159
gnu: r-annotate: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
00281ea3cd
gnu: r-modelmetrics: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
9bd78484a2
gnu: r-preprocesscore: Update to 1.44.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
1b3552310d
gnu: r-tidyr: Update to 0.8.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
466397c35b
gnu: r-dt: Update to 0.5. 
* gnu/packages/statistics.scm (r-dt): Update to 0.5.
[propagated-inputs]: Add r-promises.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
9094eb892c
gnu: r-roxygen2: Update to 6.1.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
0de3ebb099
gnu: r-survival: Update to 2.43-1. 
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
83ca17d8e8
gnu: r-matrix: Update to 1.2-15. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
1966d8ffc7
gnu: r-lattice: Update to 0.20-38. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus
600a25eb04
gnu: r-mass: Update to 7.3-51.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
a44f8b00fe
gnu: r-pander: Update to 0.6.3. 
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
7466c3bb06
gnu: r-rcmdcheck: Update to 1.3.1. 
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1.
[propagated-inputs]: Add r-sessioninfo.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
fc532b452f
gnu: r-remotes: Update to 2.0.2. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
3d6fa1a3ad
gnu: r-sessioninfo: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
244a5c43ec
gnu: r-flextable: Update to 0.4.6. 
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
84d0d860e1
gnu: r-sjmisc: Update to 2.7.6. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
cea8a60747
gnu: r-xts: Update to 0.11-2. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
5d986a3b41
gnu: r-psych: Update to 1.8.10. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
56af171ffd
gnu: r-ipred: Update to 0.9-8. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
ec0ee08576
gnu: r-ffbase: Update to 0.12.7. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
65dd0e6748
gnu: r-pkgload: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
0dd84df121
gnu: r-ps: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
269182b0f1
gnu: r-rgraphviz: Update to 2.26.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
bb47aca5e7
gnu: Add hdf5-1.10. 
* gnu/packages/maths.scm (hdf5-1.10): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
d639d8884c
gnu: r-regioner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
286157dc49
gnu: Add r-biocneighbors. 
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
6f1e1d0f88
gnu: r-inspect: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
c348cfed74
gnu: r-rots: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
016afac30f
gnu: r-glimma: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
6ea9ae9c39
gnu: r-goseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
b858338c76
gnu: r-ctc: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
bbc4787cf2
gnu: r-interactionset: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
c4fed658a9
gnu: r-riboseqr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
e22e462b33
gnu: r-riboprofiling: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
e9427b2c78
gnu: r-ripseeker: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
aa802eafb6
gnu: r-chipcomp: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
4728e27511
gnu: r-bayseq: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
14520b640e
gnu: r-graph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
95ee4a466b
gnu: r-multtest: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
a92f523026
gnu: r-qdnaseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
9add0933d0
gnu: r-cghcall: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
46cdceef4c
gnu: r-cghbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
f1c606ce8c
gnu: r-marray: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus
98652568a4
gnu: r-diffbind: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus
6168692159
gnu: r-hpar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus
1e605c030f
gnu: Add r-biocmanager. 
* gnu/packages/cran.scm (r-biocmanager): New variable.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus
b58940cb03
gnu: Add r-ncdf4. 
* gnu/packages/cran.scm (r-ncdf4): New variable.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus
bfa5662e38
gnu: Add r-rcppannoy. 
* gnu/packages/cran.scm (r-rcppannoy): New variable.
 2018-11-07 12:26:31 +01:00
Mathieu Othacehe
8243f4e55a
gnu: slang: Use a correct location for terminfo dirs. 
As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.

* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
 2018-11-07 18:39:19 +09:00
Mathieu Othacehe
a7903ca150
gnu: terminals: Change libtsm and kmscon repositories. 
Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.

* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
 2018-11-07 18:27:01 +09:00
Mathieu Othacehe
581720bc74
gnu: Add guile-newt. 
* gnu/packages/guile.scm (guile-newt): New variable.
 2018-11-07 18:09:30 +09:00
Efraim Flashner
cbb5d2e145
gnu: kodi: Fix typo. 
This is a follow-up to 2c17bd7b29.

* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
 2018-11-07 10:38:13 +02:00
Leo Famulari
02e2133bd2
gnu: LibreOffice: Update to 6.1.3.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
 2018-11-06 23:13:50 -05:00
Leo Famulari
b20aef98a0
gnu: GnuPG: Update to 2.2.11. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
 2018-11-06 17:26:45 -05:00
Marius Bakke
c6b05bacc0
gnu: nginx: Update to 1.14.1 [security fixes]. 
This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.

* gnu/packages/web.scm (nginx): Update to 1.14.1.
 2018-11-06 21:34:30 +01:00
Leo Famulari
f25614229b
gnu: Syncthing: Update to 0.14.52. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
 2018-11-06 11:16:22 -05:00
Ludovic Courtès
4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms. 
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-06 17:08:46 +01:00
Stefan Stefanović
158c02dffa
gnu: Add xcb-util-errors. 
* gnu/packages/xorg.scm (xcb-util-errors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-06 17:00:02 +01:00
Ludovic Courtès
3527f600b5
gnu: guile-sqlite3: Update home page. 
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
 2018-11-06 17:00:01 +01:00
lakshmi
cddc0300b7
gnu: Add r-weights. 
* gnu/packages/cran.scm (r-weights): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-11-06 16:06:42 +01:00
Tobias Geerinckx-Rice
fe4fb278b8
gnu: youtube-dl: Update to 2018.11.03. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
 2018-11-06 15:34:37 +01:00
Tobias Geerinckx-Rice
b1eeeb8dd4
gnu: terraform-docs: Update to 0.5.0. 
* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
 2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice
c3b8300af3
gnu: jq: Don't use NAME in source URI. 
* gnu/packages/web.scm (jq)[source]: Code more hard.
 2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice
418dd6adb5
gnu: jq: Update to 1.6. 
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-06 15:34:36 +01:00
Rutger Helling
c58f3ebaf8
gnu: ffmpeg: Update to 4.1. 
* gnu/packages/video.scm (ffmpeg): Update to 4.1.
 2018-11-06 12:02:59 +01:00
Efraim Flashner
730e5fbc66
Revert "gnu: c-ares: Update to 1.15.0." 
c-ares has more than 3000 dependant packages.

This reverts commit b588adc96f.
 2018-11-06 12:22:02 +02:00
Efraim Flashner
b588adc96f
gnu: c-ares: Update to 1.15.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
 2018-11-06 08:32:56 +02:00
Marius Bakke
adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
 2018-11-05 23:53:30 +01:00
Marius Bakke
208e82297c
gnu: xapian: Update to 1.4.9. 
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
 2018-11-05 23:46:38 +01:00
Marius Bakke
d79c8148cc
gnu: libssh: Update to 0.7.7. 
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
 2018-11-05 23:46:38 +01:00
Marius Bakke
b5a887637c
gnu: strace: Update to 4.25. 
* gnu/packages/linux.scm (strace): Update to 4.25.
 2018-11-05 23:46:38 +01:00
Marius Bakke
876428dd98
gnu: libmtp: Update to 1.1.16. 
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke
039241bc96
gnu: libgit2: Update to 0.26.8. 
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
 2018-11-05 23:46:38 +01:00
Marius Bakke
c98a7e6b91
gnu: i3-wm: Update to 4.16. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke
9c415f96ec
gnu: libgphoto2: Update to 2.5.20. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
 2018-11-05 23:46:38 +01:00
Marius Bakke
66044a3698
gnu: glm: Update to 0.9.9.3. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke
64b60f38e7
gnu: ffmpeg: Update to 4.0.3. 
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke
c5e5711002
gnu: ffmpeg@3.4: Update to 3.4.5. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
 2018-11-05 23:46:37 +01:00
Marius Bakke
196653145a
gnu: feh: Update to 2.28.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
 2018-11-05 23:46:37 +01:00
Marius Bakke
00815eea38
gnu: libsoup: Update to 2.64.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
 2018-11-05 23:46:37 +01:00
Marius Bakke
0a56ffdf1f
gnu: mono: Update home page. 
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
 2018-11-05 23:46:37 +01:00
Leo Famulari
288d24800d
gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}]. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.
 2018-11-05 16:22:11 -05:00
Pierre Neidhardt
426ffb830a
gnu: emacs-mu4e-conversation: Update to 20181105. 
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105.
 2018-11-05 20:22:06 +01:00
Pierre Neidhardt
695db2f98a
gnu: Add emacs-helm-slime. 
* gnu/packages/emacs.scm (emacs-helm-slime): New variable.
 2018-11-05 13:58:33 +01:00
Mark H Weaver
c9f3d38be4
gnu: linux-libre: Update to 4.19.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.1.
(%linux-libre-hash): Update hash.
 2018-11-05 04:00:45 -05:00
Mark H Weaver
28c717213d
gnu: linux-libre@4.14: Update to 4.14.79. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.79.
(%linux-libre-4.14-hash): Update hash.
 2018-11-05 04:00:43 -05:00
Eric Bavier
cddc044ce7
libreoffice: honor '--cores=...' during build. 
* gnu/packages/libreoffice.scm (libreoffice)[configure-flags]: Add
'--with-parallelism' flag.
 2018-11-04 21:56:39 -06:00
Danny Milosavljevic
64eb038eef
gnu: Add fswatch. 
* gnu/packages/monitoring.scm (fswatch): New variable.
 2018-11-05 03:01:21 +01:00
Luther Thompson
1417f50317
gnu: python-ilinkedlist: Update to 0.2.0. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Vagrant Cascadian
b6e9514864
gnu: pelican: Update to 3.7.1. 
* gnu/packages/python.scm (pelican): Update to 3.7.1.
  [home-page]: Use HTTPS URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Pkill -9
c834bd3bb2
gnu: xonotic: Add icon and category to desktop files. 
* gnu/packages/games.scm (xonotic): Add icon ("xonotic") and category
("Game") to the .desktop files for Xonotic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Pierre Neidhardt
97b7b96efc
gnu: go-github-com-urfave-cli: Remove duplicate declaration. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): Remove duplicate declaration.
 2018-11-04 23:33:24 +01:00
Efraim Flashner
30012b7408
gnu: myrepos: Wrap the webcheckout binary. 
* gnu/packages/version-control.scm (myrepos)[arguments]: Add a custom
'wrap-webcheckout phase to wrap webcheckout with its perl libraries.
[inputs]: Add perl-encode-locale, perl-html-parser, perl-http-date,
perl-http-message, perl-libwww, perl-try-tiny, perl-uri.
 2018-11-04 12:45:27 +02:00
Efraim Flashner
f909e21797
gnu: debian-archive-keyring: Update to 2018.1. 
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2018.1.
[source]: Download from git repository.
 2018-11-04 12:00:13 +02:00
Efraim Flashner
2e77bbed71
gnu: ruby@2.3: Update to 2.3.8. 
* gnu/packages/ruby.scm (ruby@2.3): Update to 2.3.8.
 2018-11-04 12:00:13 +02:00
Efraim Flashner
d4b5e4bb73
gnu: debootstrap: Update to 1.0.109. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.109.
 2018-11-04 12:00:10 +02:00
Arun Isaac
3e84ce51fb
gnu: mpop: Update to 1.4.0. 
* gnu/packages/mail.scm (mpop): Update to 1.4.0.
 2018-11-04 10:36:17 +05:30
Efraim Flashner
e9f305a1c8
gnu: sbcl-lift: Don't keep the bundled website. 
* gnu/packages/lisp.scm (sbcl-lift)[source]: Remove bundled website.
[arguments]: Remove custom 'make-gzips-writable phase.
 2018-11-03 20:43:35 +02:00
Ludovic Courtès
0e091b3e93
gnu: totem: Update to 3.26.2. 
* gnu/packages/gnome.scm (totem): Update to 3.26.2.
 2018-11-03 15:44:40 +01:00
Ludovic Courtès
504f0cf198
gnu: emacs-debbugs: Update to 0.16. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.16.
 2018-11-03 15:44:24 +01:00
Ludovic Courtès
a7c8574f39
gnu: perl-image-exiftool: Update to 11.11. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.11.
 2018-11-03 15:16:42 +01:00
Ludovic Courtès
46c8f53ba8
gnu: emacs-dired-du: Update to 0.5.1. 
* gnu/packages/emacs.scm (emacs-dired-du): Update to 0.5.1.
 2018-11-03 15:16:20 +01:00
Ludovic Courtès
8e5c59868c
gnu: diffoscope: Update to 104. 
* gnu/packages/package-management.scm (diffoscope): Update to 104.
 2018-11-03 15:16:02 +01:00
Arun Isaac
b1c7f5fff9
gnu: emacs-emms: Update to 5.1. 
* gnu/packages/emacs.scm (emacs-emms): Update to 5.1.
 2018-11-03 19:14:05 +05:30
Tobias Geerinckx-Rice
3995e85462
gnu: tor: Update to 0.3.4.9. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.9.
 2018-11-02 19:51:12 +01:00
Julien Lepiller
ff349415b2
gnu: python-apache-libcloud: Update to 2.3.0. 
* gnu/packages/python.scm (python-apache-libcloud)
(python2-apache-libcloud): Update to 2.3.0.
 2018-11-02 14:32:24 +01:00
Danny Milosavljevic
722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master. 2018-11-02 11:01:45 +01:00
Leo Famulari
b3325eb306
gnu: Go 1.11: Avoid unnecessary store references. 
This shrinks the closure of Go 1.11 from 1379 MiB to 581 MiB.

Fixes <https://bugs.gnu.org/32949>.

* gnu/packages/golang.scm (go-1.11)[arguments]: Add a 'delete-extraneous-files'
phase.
 2018-11-01 23:23:09 -04:00
Leo Famulari
7571ec3576
gnu: MPD: Update to 0.20.23. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.23.
 2018-11-01 15:30:05 -04:00
Leo Famulari
33279c2a19
gnu: mpd-mpc: Update to 0.31. 
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.31.
[native-inputs]: Add python-sphinx.
 2018-11-01 15:30:05 -04:00
Leo Famulari
361dd8a556
gnu: icecast: Update to 2.4.4 [fixes CVE-2018-18820]. 
* gnu/packages/xiph.scm (icecast): Update to 2.4.4.
 2018-11-01 12:33:14 -04:00
Rutger Helling
d7ca1899aa
gnu: mame: Update to 0.203. 
* gnu/packages/emulators.scm (mame): Update to 0.203.
 2018-11-01 09:24:52 +01:00
Rutger Helling
a769a4d432
gnu: xpra: Update to 2.4.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.1.
 2018-11-01 08:32:45 +01:00
Rutger Helling
e7039f10ec
gnu: dolphin-emu: Use ffmpeg instead of ffmpeg@3.4. 
* gnu/packages/emulators.scm (dolphin-emu): Use ffmpeg instead of ffmpeg@3.4.
 2018-11-01 08:20:13 +01:00
Rutger Helling
ee3dd7a83a
gnu: sdl2: Update to 2.0.9. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.9.
 2018-11-01 08:20:13 +01:00
Tobias Geerinckx-Rice
66a2a47117
gnu: whois: Update to 5.4.0. 
* gnu/packages/networking.scm (whois): Update to 5.4.0.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
38fda1cc36
gnu: highlight: Update to 3.47. 
* gnu/packages/pretty-print.scm (highlight): Update to 3.47.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
a72d337fbc
gnu: python-jsonrpclib-pelix: Update to 0.3.2. 
* gnu/packages/python.scm (python-jsonrpclib-pelix): Update to 0.3.2.
[arguments]: Disable #:tests?.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice
60ed87871d
gnu: python-pynacl: Update to 1.3.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.3.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
351a12b0a7
gnu: oniguruma: Update to 6.9.0. 
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
33bddd309c
gnu: motion: Install translations. 
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
2ea678fabf
gnu: motion: Don't use unstable tarball. 
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice
4fbcfc1482
Keep (gnu packages video) module imports in order. 
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
 2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice
c3069cd183
gnu: motion: Update to 4.2. 
* gnu/packages/video.scm (motion): Update to 4.2.
 2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice
2930a39b16
gnu: julia: Update objconv input to 2018-10-07. 
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
 2018-11-01 04:32:35 +01:00
Efraim Flashner
c16913d34d
gnu: myrepos: Update to 1.20180726. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-31 21:57:02 +02:00
Leo Famulari
c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes]. 
Fixes CVE-2018-{16839,16840,16842}.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
 2018-10-31 13:54:20 -04:00
Rutger Helling
124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
 2018-10-31 10:40:04 +01:00
Rutger Helling
3126bee69a
gnu: wine-staging: Update to 3.19. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
 2018-10-31 09:39:55 +01:00
Mark H Weaver
a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
 2018-10-31 01:47:52 -04:00
Arun Isaac
c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3. 
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
 2018-10-31 09:31:59 +05:30
Arun Isaac
c6588749a6
gnu: libqmatrixclient: Update to 0.4.0. 
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
 2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice
b590951ff2
gnu: meandmyshadow: Update home page. 
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice
1d9a9d27ae
gnu: meandmyshadow: Update to 0.5. 
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice
4cae7e67f3
gnu: hyperrogue: Update to 10.4x. 
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice
21fc352bad
gnu: yosys: Don't use unstable tarball. 
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice
becee7029f
gnu: disorderfs: Update to 0.5.5. 
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
58cd3123ac
gnu: pulseview: Update to 0.4.1. 
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
61c58b7827
gnu: sigrok-cli: Update to 0.7.1. 
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
295fc4152a
gnu: cloc: Update to 1.80. 
* gnu/packages/code.scm (cloc): Update to 1.80.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice
1204402a90
gnu: python-partd: Update to 0.3.9. 
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
 2018-10-30 23:40:42 +01:00
Ricardo Wurmus
fd649d1e68
gnu: Add r-r2glmm. 
* gnu/packages/cran.scm (r-r2glmm): New variable.
 2018-10-30 22:47:35 +01:00
Ricardo Wurmus
7c02dd6268
gnu: Add r-lmertest. 
* gnu/packages/cran.scm (r-lmertest): New variable.
 2018-10-30 22:47:26 +01:00
Ricardo Wurmus
49863fd695
gnu: Add r-afex. 
* gnu/packages/cran.scm (r-afex): New variable.
 2018-10-30 22:47:18 +01:00
Ricardo Wurmus
20ff6e3a34
gnu: Add r-mvabund. 
* gnu/packages/cran.scm (r-mvabund): New variable.
 2018-10-30 22:47:10 +01:00
Ricardo Wurmus
4fb35ebd8d
gnu: Add r-rcppgsl. 
* gnu/packages/cran.scm (r-rcppgsl): New variable.
 2018-10-30 22:47:00 +01:00
Ricardo Wurmus
373cef0a0c
gnu: Add r-tweedie. 
* gnu/packages/cran.scm (r-tweedie): New variable.
 2018-10-30 22:46:47 +01:00
Ricardo Wurmus
32499b26e6
gnu: Add r-clusteval. 
* gnu/packages/cran.scm (r-clusteval): New variable.
 2018-10-30 22:13:01 +01:00
Ricardo Wurmus
7a06cdfa8c
gnu: r-analytics: Update to 3.0. 
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
39528a5ee9
gnu: r-pracma: Update to 2.1.8. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1. 
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
65279cc8f3
gnu: Add r-shinyfiles. 
* gnu/packages/web.scm (r-shinyfiles): New variable.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
a056e2251e
gnu: r-htmlwidgets: Update to 1.3. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
f697ef4a0d
gnu: r-servr: Update to 0.11. 
* gnu/packages/web.scm (r-servr): Update to 0.11.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus
8871a51350
gnu: r-webshot: Update to 0.5.1. 
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus
d42f741035
gnu: r-dendextend: Update to 1.9.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus
31c8d9fe00
gnu: r-emmeans: Update to 1.3.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus
bec74196ea
gnu: r-abps: Update to 0.3. 
* gnu/packages/cran.scm (r-abps): Update to 0.3.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus
464676a970
gnu: r-proc: Update to 1.13.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
 2018-10-30 21:48:03 +01:00
Ricardo Wurmus
71d995392b
gnu: r-rdpack: Update to 0.10-1. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
 2018-10-30 21:47:54 +01:00
Ricardo Wurmus
081af9fae7
gnu: r-hdf5r: Update to 1.0.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
 2018-10-30 21:47:46 +01:00
Ricardo Wurmus
08645fcff5
gnu: r-fansi: Update to 0.4.0. 
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
 2018-10-30 21:47:37 +01:00
Ricardo Wurmus
7608984fe9
gnu: r-later: Update to 0.7.5. 
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
 2018-10-30 21:47:28 +01:00
Ricardo Wurmus
80234d3294
gnu: r-maptools: Update to 0.9-4. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
 2018-10-30 21:47:20 +01:00
Ricardo Wurmus
fda8dd58c2
gnu: r-shinyace: Update to 0.3.2. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
 2018-10-30 21:47:06 +01:00
Ricardo Wurmus
02c57c018a
gnu: r-np: Update to 0.60-9. 
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
 2018-10-30 21:46:57 +01:00
Ricardo Wurmus
44de41b572
gnu: r-expm: Update to 0.999-3. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
 2018-10-30 21:46:48 +01:00
Ricardo Wurmus
484e81f73a
gnu: r-cubature: Update to 1.4-1. 
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
 2018-10-30 21:46:36 +01:00
Ricardo Wurmus
905734fd7c
gnu: r-extradistr: Update to 1.8.10. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
 2018-10-30 21:46:26 +01:00
Ricardo Wurmus
534bf85b9d
gnu: r-ttr: Update to 0.23-4. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
 2018-10-30 21:46:17 +01:00
Ricardo Wurmus
dda4ce560f
gnu: r-tinytex: Update to 0.9. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
 2018-10-30 21:46:10 +01:00
Ricardo Wurmus
a8de3090d8
gnu: r-xfun: Update to 0.4. 
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
 2018-10-30 21:46:00 +01:00
Ricardo Wurmus
8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
 2018-10-30 21:45:51 +01:00
Ricardo Wurmus
bba80fadbe
gnu: r-magic: Update to 1.5-9. 
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
 2018-10-30 21:45:42 +01:00
Ricardo Wurmus
5621b8403b
gnu: r-sm: Update to 2.2-5.6. 
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
 2018-10-30 21:45:32 +01:00
Ricardo Wurmus
870faab4b7
gnu: r-xts: Update to 0.11-1. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
 2018-10-30 21:45:16 +01:00
Ricardo Wurmus
16a39c2d56
gnu: r-ggridges: Update to 0.5.1. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
 2018-10-30 21:45:07 +01:00
Ricardo Wurmus
9e82d6080e
gnu: r-cli: Update to 1.0.1. 
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
 2018-10-30 21:44:59 +01:00
Ricardo Wurmus
2b8126a4ec
gnu: r-reshape: Update to 0.8.8. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
 2018-10-30 21:44:48 +01:00
Ricardo Wurmus
ecdfca05c8
gnu: r-ffbase: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
 2018-10-30 21:44:38 +01:00
Ricardo Wurmus
674c818560
gnu: r-rcpp: Update to 0.12.19. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
 2018-10-30 21:44:28 +01:00
Ricardo Wurmus
0ab28e5450
gnu: r-pkgload: Update to 1.0.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
 2018-10-30 21:43:38 +01:00
Ricardo Wurmus
2657e666cb
gnu: r-pkgbuild: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
 2018-10-30 21:43:28 +01:00
Ricardo Wurmus
7e127ab128
gnu: r-ps: Update to 1.2.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
 2018-10-30 21:43:19 +01:00
Ricardo Wurmus
b62e104b84
gnu: r-ape: Update to 5.2. 
* gnu/packages/cran.scm (r-ape): Update to 5.2.
 2018-10-30 21:43:10 +01:00
Ricardo Wurmus
1c9906c2dd
gnu: r-reprex: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
 2018-10-30 21:42:59 +01:00
Ricardo Wurmus
6b451c0801
gnu: r-gprofiler: Update to 0.6.7. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
 2018-10-30 21:42:48 +01:00
Ricardo Wurmus
4fc6609a0c
gnu: r-keggrest: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
 2018-10-30 21:42:39 +01:00
Ricardo Wurmus
67cfb83ff1
gnu: r-msnbase: Update to 2.6.4. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
 2018-10-30 21:42:31 +01:00
Ricardo Wurmus
807d961cc9
gnu: r-methylkit: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
 2018-10-30 21:42:20 +01:00
Ricardo Wurmus
ac0166450d
gnu: r-wgcna: Update to 1.66. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
 2018-10-30 21:42:09 +01:00
Ricardo Wurmus
1182460750
gnu: r-go-db: Update to 3.6.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
 2018-10-30 21:42:00 +01:00
Ricardo Wurmus
466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
 2018-10-30 21:41:12 +01:00
Ricardo Wurmus
dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
 2018-10-30 21:40:57 +01:00
Ricardo Wurmus
72408357fa
gnu: r-genomicranges: Update to 1.32.7. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
 2018-10-30 21:40:48 +01:00
Ricardo Wurmus
9dad1957ab
gnu: r-limma: Update to 3.36.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
 2018-10-30 21:40:40 +01:00
Ricardo Wurmus
57cf6a14f0
gnu: r-edger: Update to 3.22.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
 2018-10-30 21:40:32 +01:00
Ricardo Wurmus
eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
 2018-10-30 21:40:22 +01:00
Ricardo Wurmus
e563acb96b
gnu: r-iranges: Update to 2.14.12. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
 2018-10-30 21:40:12 +01:00
Ricardo Wurmus
192c19f484
gnu: r-vegan: Update to 2.5-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
 2018-10-30 21:40:00 +01:00
Ricardo Wurmus
696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus
6ab5670aba
gnu: r-nloptr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
 2018-10-30 21:39:39 +01:00
Ricardo Wurmus
c5bd8a7c23
gnu: r-devtools: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
 2018-10-30 21:39:29 +01:00
Ricardo Wurmus
aa99568639
gnu: r-evaluate: Update to 0.12. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
 2018-10-30 21:39:16 +01:00
Ricardo Wurmus
60aac7ec16
gnu: r-robustbase: Update to 0.93-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
 2018-10-30 21:39:06 +01:00
Ricardo Wurmus
16508df1d3
gnu: r-cardata: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
 2018-10-30 21:38:55 +01:00