Marius Bakke
d63f588486
gnu: sudo: Update to 1.8.26.
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* gnu/packages/admin.scm (sudo): Update to 1.8.26.
2018-11-14 21:05:30 +01:00
Marius Bakke
bac2974e86
gnu: feh: Update to 3.0.
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* gnu/packages/image-viewers.scm (feh): Update to 3.0.
2018-11-14 21:05:30 +01:00
Ricardo Wurmus
ee66a13563
gnu: Add jamm.
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* gnu/packages/bioinformatics.scm (jamm): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
e4f4a04a51
gnu: Add r-ouch.
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* gnu/packages/cran.scm (r-ouch): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
10483a64ee
gnu: Add r-activity.
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* gnu/packages/cran.scm (r-activity): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
3cef715a46
gnu: Add r-circular.
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* gnu/packages/cran.scm (r-circular): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
08bf097a0b
gnu: Add r-overlap.
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* gnu/packages/cran.scm (r-overlap): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
acbf23da44
gnu: Add r-acdm.
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* gnu/packages/cran.scm (r-acdm): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
ffdeda3ce0
gnu: Add r-acd.
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* gnu/packages/cran.scm (r-acd): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
488dc4e1e2
gnu: Add r-abn.
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* gnu/packages/cran.scm (r-abn): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
0c92f3734e
gnu: Add r-rjags.
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* gnu/packages/cran.scm (r-rjags): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus
0bca8643a2
gnu: Add jags.
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* gnu/packages/statistics.scm (jags): New variable.
2018-11-14 15:13:17 +01:00
Ricardo Wurmus
51b262f310
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4.
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* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
2018-11-13 23:34:40 +01:00
Ricardo Wurmus
d34959b8d4
gnu: r-org-mm-eg-db: Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
2018-11-13 23:34:40 +01:00
Ricardo Wurmus
314511b862
gnu: r-org-dm-eg-db: Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus
76bd16bcf6
gnu: r-org-ce-eg-db: Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus
fc7683fa30
gnu: r-org-hs-eg-db: Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus
cb9e6ed702
gnu: r-genomationdata: Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus
13e70f6304
gnu: r-go-db: Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus
13a574652b
gnu: r-genomeinfodbdata: Update to 1.2.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
2018-11-13 23:34:39 +01:00
Taegil Bae
3f995aaf21
gnu: spice-vdagent: Fix typo in desktop file.
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Fixes <https://bugs.gnu.org/33346 >.
* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
2018-11-13 15:26:30 -05:00
Alex Vong
c991806a7d
gnu: ImageMagick: Update to 6.9.10-14.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
2018-11-14 03:09:37 +08:00
Leo Famulari
d540137509
gnu: libssh: Fetch source over HTTPS.
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* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
2018-11-13 11:43:35 -05:00
Leo Famulari
978d59737a
gnu: direnv: Build with Go 1.9.
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* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
2018-11-13 11:28:23 -05:00
Leo Famulari
021bf6af18
gnu: Poppler: Fix CVE-2018-19149.
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* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
2018-11-13 11:28:23 -05:00
Leo Famulari
8263b9f71f
gnu: certbot, python-acme: Update to 0.28.0.
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* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
2018-11-13 10:10:42 -05:00
Ludovic Courtès
3483f82413
gnu: guix: Update to f5a2724.
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* gnu/packages/package-management.scm (guix): Update to f5a2724
2018-11-13 15:44:25 +01:00
Oleg Pykhalov
155956449a
gnu: restic: Fix build phase.
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* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
2018-11-13 15:03:15 +03:00
Ricardo Wurmus
6018683683
gnu: c-toxcore: Fetch sources from git.
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* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
2018-11-13 10:51:41 +01:00
Rutger Helling
7fed5481fe
gnu: wine-staging: Update to 3.20.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
2018-11-13 10:24:42 +01:00
Julien Lepiller
0dd60c1c9b
gnu: php: Update to 7.2.12.
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* gnu/packages/php.scm (php): Update to 7.2.12.
2018-11-12 23:57:42 +01:00
Arun Isaac
e740a90228
gnu: youtube-dl: Update to 2018.11.07.
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* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
2018-11-12 22:09:12 +05:30
Efraim Flashner
53bcee9ea7
gnu: vifm: Update to 0.10.
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* gnu/packages/vim.scm (vifm): Update to 0.10.
2018-11-12 12:37:00 +02:00
Pierre Neidhardt
5c4758415d
gnu: go-github-com-aarzilli-golua: Fix for go-1.11.
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* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
2018-11-12 10:31:23 +01:00
Pierre Neidhardt
46a4ae2212
gnu: go-github-com-wtolson-go-taglib: Fix tests and build for go-1.11.
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* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
2018-11-12 10:30:10 +01:00
Pierre Neidhardt
66fa8f0f77
gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
2018-11-12 10:29:43 +01:00
Pierre Neidhardt
d4780c8238
gnu: go-github-com-audriusbutkevicius-cli: Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
2018-11-12 10:29:37 +01:00
Pierre Neidhardt
46a37b5966
gnu: go-github-com-prometheus-common-expfmt: Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
2018-11-12 10:29:31 +01:00
Pierre Neidhardt
9a65a05201
gnu: go: Update default to 1.11.
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* gnu/packages/golang.scm (go): Update default to 1.11.
2018-11-12 10:28:46 +01:00
Ricardo Wurmus
5f9b38ba34
gnu: r-s4vectors: Update to 0.20.1.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
06910a8689
gnu: r-rcmdcheck: Update to 1.3.2.
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* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
2a4c5877a9
gnu: r-ggpubr: Update to 0.1.9.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
441cf11de1
gnu: r-dplyr: Update to 0.7.8.
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* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.8.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
41d2c26e67
gnu: r-rcpparmadillo: Update to 0.9.200.4.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.4.0.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
23dd886a95
gnu: r-rtsne: Update to 0.15.
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* gnu/packages/statistics.scm (r-rtsne): Update to 0.15.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus
7865c8c460
gnu: r-lme4: Update to 1.1-19.
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* gnu/packages/statistics.scm (r-lme4): Update to 1.1-19.
2018-11-11 23:13:48 +01:00
Marius Bakke
a509b18087
gnu: webkitgtk@2.22: Adjust to documentation output.
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This is a follow-up to commit 0ead0b4d2c
2018-11-11 22:47:06 +01:00
Ricardo Wurmus
aaf0e47f6d
gnu: libtoxcore: Update to 0.0.0-2.bf69b54.
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* gnu/packages/messaging.scm (libtoxcore): Update to 0.0.0-2.bf69b54.
[native-inputs]: Add check.
2018-11-11 20:51:51 +01:00
Ricardo Wurmus
e874f34d3f
gnu: mumi: Update to 0.0.0-2.bfd96ce7.
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* gnu/packages/mail.scm (mumi): Update to 0.0.0-2.bfd96ce7.
2018-11-11 20:51:51 +01:00
Leo Famulari
ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].
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* gnu/packages/databases.scm (postgresql): Update to 10.6.
2018-11-11 14:10:03 -05:00
