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30192 commits

Author SHA1 Message Date
Danny Milosavljevic
da99c46f63
gnu: Add java-w3c-svg. 
* gnu/packages/batik.scm (java-w3c-svg-1.0, java-w3c-svg): New variables.
 2018-10-07 14:15:21 +02:00
Danny Milosavljevic
2c4be1add0
gnu: Add java-w3c-smil. 
* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-10-07 14:14:13 +02:00
fis trivial
c8a99ab911
gnu: mercurial: Update to 4.6.2. 
* gnu/packages/version-control.scm (mercurial): Update to 4.6.2.
 2018-10-07 13:02:51 +03:00
宋文武
96808b39e7
gnu: pd: Update to 0.49-0. 
* gnu/packages/music.scm (pd): Update to 0.49-0.
 2018-10-07 15:29:47 +08:00
Tobias Geerinckx-Rice
ccfac015bf
gnu: wcslib: Update to 5.20. 
* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.
 2018-10-06 23:29:31 +02:00
Leo Famulari
e90ce11577
gnu: git: Update to 2.19.1 [fixes CVE-2018-17456]. 
* gnu/packages/version-control.scm (git): Update to 2.19.1.
 2018-10-06 04:11:26 -04:00
Ricardo Wurmus
d71078bc75
gnu: Add ngless. 
* gnu/packages/bioinformatics.scm (ngless): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus
b1f9cc88c4
gnu: Add ghc-safeio. 
* gnu/packages/haskell.scm (ghc-safeio): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus
ea202046fa
gnu: Add ghc-file-embed. 
* gnu/packages/haskell.scm (ghc-file-embed): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus
c7e400b1ee
gnu: Add ghc-configurator. 
* gnu/packages/haskell.scm (ghc-configurator): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
d453b89944
gnu: Add ghc-bytestring-lexing. 
* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
d9ee3e375c
gnu: Add ghc-inline-c-cpp. 
* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
9ef95a196f
gnu: Add ghc-safe-exceptions. 
* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
88189099df
gnu: Add ghc-inline-c. 
* gnu/packages/haskell.scm (ghc-inline-c): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
52f5114d01
gnu: Add ghc-raw-string-qq. 
* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
5e6bf3e2da
gnu: Add ghc-hpack. 
* gnu/packages/haskell.scm (ghc-hpack): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
320323141f
gnu: Add ghc-interpolate. 
* gnu/packages/haskell.scm (ghc-interpolate): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
a933cbfb61
gnu: Add ghc-conduit-algorithms. 
* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
71c2e3e1a1
gnu: Add ghc-pqueue. 
* gnu/packages/haskell.scm (ghc-pqueue): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
4fc161b9c6
gnu: Add ghc-bzlib-conduit. 
* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
44c6180b3f
gnu: Add ghc-lzma-conduit. 
* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
38757d610e
gnu: Add ghc-bindings-dsl. 
* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
80588cfccf
gnu: Add ghc-stm-conduit. 
* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
36ec599e78
gnu: Add ghc-lzma. 
* gnu/packages/haskell.scm (ghc-lzma): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
d05ed20ef1
gnu: Add ghc-cereal-conduit. 
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
6c8197783d
gnu: Add ghc-atomic-write. 
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
562cfae330
gnu: Add ghc-chart-cairo. 
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
7df25c77c5
gnu: Add ghc-cairo. 
* gnu/packages/haskell.scm (ghc-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
279c97dba8
gnu: ghc-regex: Fix build. 
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs. 
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
 2018-10-05 23:59:25 +02:00
Christopher Baines
11ff2adc74
gnu: ruby-sass: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
 2018-10-05 21:25:42 +01:00
Christopher Baines
4d372cb9a2
gnu: Add ruby-mathn. 
* gnu/packages/ruby.scm (ruby-mathn): New variable.
 2018-10-05 21:25:42 +01:00
Christopher Baines
2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation. 
This fixes building ruby-sass with Ruby 2.5.

* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
 2018-10-05 21:25:42 +01:00
Christopher Baines
39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5. 
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
 2018-10-05 21:25:41 +01:00
Christopher Baines
0b060e3486
gnu: ruby-shindo: Remove -rubygems flags. 
These have been removed in Ruby 2.5.

* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
 2018-10-05 21:25:41 +01:00
Christopher Baines
357450dca0
gnu: bioruby: Update to 1.5.2. 
This works with Ruby 2.5.

* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
 2018-10-05 21:25:39 +01:00
Kei Kebreau
b0e829c632
gnu: gnucash-docs: Update to 3.3. 
The documentation on SourceForge is now located in the same directory as the
source code.

* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
 2018-10-05 14:28:44 -04:00
Kei Kebreau
73ca145a7e
gnu: gnucash: Update to 3.3. 
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
 2018-10-05 13:41:08 -04:00
Tobias Geerinckx-Rice
fc4738149f
gnu: Add bastet. 
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-05 19:32:45 +02:00
Tobias Geerinckx-Rice
b008a12ae7
gnu: fdroidserver: Update to 1.0.10. 
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
8713c03e55
gnu: audacity: Don't use unstable tarball. 
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
3f90445692
gnu: filezilla: Update to 3.37.4. 
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
38aca674c3
gnu: libfilezilla: Update to 0.14.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
 2018-10-05 19:30:08 +02:00
Ricardo Wurmus
a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools. 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
8e72f0f319
gnu: deeptools: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
939882f734
gnu: python-pysam: Update to 0.15.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs. 
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
f79b59e311
gnu: bcftools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
4ae4a15232
gnu: samtools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
bd5f5eece9
gnu: htslib: Update to 1.9. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
 2018-10-05 09:21:50 +02:00