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126876 commits

Author SHA1 Message Date
Ricardo Wurmus
1c103cad67
gnu: r-biovizbase: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.50.0.

Change-Id: Ie73b9060694011cca1f8dcbe521d6ed5a6c1303f
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
2fcc6e7ba6
gnu: r-biostrings: Update to 2.70.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.1.
[native-inputs]: Add r-knitr.

Change-Id: I11d29af17c47e495003441ff1c1b0928d1f7f752
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
7f14908649
gnu: r-biocparallel: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.36.0.

Change-Id: I0c780b3dbfa9300751be4aee571816424659948a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
28d1244644
gnu: r-biomart: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.0.

Change-Id: Ibb83b0169aaf0b04236fdf4929405e550b1fa7c2
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0f171c8bce
gnu: r-biobase: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.62.0.

Change-Id: I8a2021b08985bc60854f452e2ea4506d16027534
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0b6f06b5bd
gnu: r-bamsignals: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.34.0.

Change-Id: I25a356b455310048f3a012068a2e0e345f990c0c
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
b1d1a0e9d3
gnu: r-aroma-light: Update to 3.32.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.32.0.

Change-Id: I696b3a1ff0f12c8761f7c11f9acae9ade38a2a65
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
81087f7b83
gnu: r-annotationhub: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.0.

Change-Id: I7f69f2692982fb19a1c0f2619826b5121aca5d63
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
3b9d98df74
gnu: r-annotationforge: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.44.0.

Change-Id: I559d8814a99fb45a15e7456bccc3f60a66dd8311
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
53cd33068a
gnu: r-annotationfilter: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.26.0.

Change-Id: Id84a87bee67a61867022ef5582fe11111840f1d5
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
4b4ecae2c9
gnu: r-annotationdbi: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.0.

Change-Id: If88ce1515962e7ee58ec3dd525bf0bd210230e57
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
beafd8ef50
gnu: r-annotate: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.80.0.

Change-Id: I9ae842dc2e27ade1016404446746e48cbcbeef5f
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d79336aa5c
gnu: r-affxparser: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.74.0.

Change-Id: I7616b594c54c209b277bcbd4bc8ab70ccb521c05
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6f51787d5f
gnu: r-affyio: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.72.0.

Change-Id: I43fd8efe010669092a5aa3ac10f436f8be83208b
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
c849ee92f6
gnu: r-affycontam: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.60.0.

Change-Id: I65ab9049c889217eea1c18c2b9fc43eb090c192a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
dde158c631
gnu: r-affycomp: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.78.0.

Change-Id: If05e314863a48dcdd9f39238a340b712ab85b805
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d2f808e301
gnu: r-affy: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.80.0.

Change-Id: If9d26b501ea42cbc9ab8c7c475757f307caa3f82
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d04ab2829a
gnu: r-nebulosa: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.12.0.

Change-Id: I27082e1678d6fba4d8eb7b7858823f283d3f4744
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6d4396aa7a
gnu: r-italics: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.62.0.

Change-Id: I239c9e5242932f806e6a7caa03d967067d71f947
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
aae891dad3
gnu: r-isoformswitchanalyzer: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.2.0.

Change-Id: Idd5f4c733972d4a49e155c439114405e412a03f9
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
71ef609861
gnu: r-iranges: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.36.0.

Change-Id: Ie62dd9084be5a97c6b82c90b7b49a1e5cfef9a77
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4d978fcd17
gnu: r-infercnv: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.0.

Change-Id: Iad990fc16ff634dbbcb99d444eeb0590807f6777
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
76f03bca61
gnu: r-ideoviz: Update to 1.37.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.37.0.

Change-Id: I9e5c7a7c8993cc806fafc710d5b5261ed4d241fc
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
e061d0d925
gnu: r-bluster: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.12.0.

Change-Id: I2d84cc756ffe0da02f37a352441faf5f49b1d3d8
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ea1d58bf25
gnu: r-dyndoc: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.80.0.

Change-Id: Ib441b637725f1472cf0585a86bb61ceb188cbb9d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
736217fae0
gnu: r-dropletutils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.22.0.

Change-Id: I38e686e3bc31e08b63f708a9032f553ae041796d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
965fecac9b
gnu: r-drimseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.30.0.

Change-Id: I1b06c2fdadaa0ff48d83d58cee976e8a15552532
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
00c73d58e7
gnu: r-derfinderhelper: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.36.0.

Change-Id: I800d211ccee7fdf122082145301adcb7395bcfca
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
96060bcb06
gnu: r-derfinder: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.36.0.

Change-Id: I3444c1db2005f19492cdda82aff4231ce273f709
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
073db5d4b2
gnu: r-densvis: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.0.
[propagated-inputs]: Add r-rtsne.

Change-Id: Icafa427d5312969bb41d706a9ba7058dc97136d6
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c5e614c7eb
gnu: r-delayedarray: Update to 0.28.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.28.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I182a54784b97189b5079047706cdb78fffe8b94a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
63c1990700
gnu: r-degreport: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.0.

Change-Id: I2932573e35be1117d5c18a700579c263fa0e3819
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
6ef7931223
gnu: r-deepsnv: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.48.0.

Change-Id: Icbc9a58f3c2a3aabfd0d27c2e265b9e37d2e2715
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2b28a41667
gnu: r-decoupler: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.8.0.

Change-Id: I5481ddd8244451eabf54ad577aab27523c85df3a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ce196875f5
gnu: r-deconvr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.8.0.

Change-Id: Ia673573a345d64e82343eeb5fe0816aa7dcf166b
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
5422b1eb27
gnu: r-decontam: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.22.0.

Change-Id: Icca2a26d70f02c7dce5816f750b7303486a4735a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4e8df83d62
gnu: r-deconrnaseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.44.0.

Change-Id: Iacfa18c72f5194390069e3861b680fc4da10adee
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2e0680f286
gnu: r-decomptumor2sig: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.18.0.

Change-Id: I3412ebce3ca3738ce8e1d0c2651e6b6d6f1bd52e
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
fd6ec75189
gnu: r-decipher: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.30.0.

Change-Id: I53f2a748c52e3a4b9dd26c82e443ffacb330b93a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
33fe5a6f94
gnu: r-dearseq: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.14.0.

Change-Id: Ifdfe4264814b614f8642542cddf4395c6d725d19
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
11631558c6
gnu: r-damefinder: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.14.0.

Change-Id: I02f9205053c6ded787a437df30bd8ae8e68d9644
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
3f815da53c
gnu: r-dama: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.74.0.

Change-Id: Ieda9ccaf4b4d7fda967170ad9771e65388303f2c
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
8d8f9903b1
gnu: r-cummerbund: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.44.0.

Change-Id: I3417397cbcd463c817299ee2d37343f8933ff8b5
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
352f4079d3
gnu: r-coverageview: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.40.0.

Change-Id: Idb6c881d5a7804984577217908062cc37ad3d2b1
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
09a6c19465
gnu: r-coregx: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.0.

Change-Id: I80acbeb9a1850d3c7a374a71898a04654b5ebd2d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
570177be67
gnu: r-cellid: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.0.
[propagated-inputs]: Add r-scater.
[native-inputs]: Remove r-scater.

Change-Id: I7be617a312fb009c6986e947e21b6cfd862db873
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
59798d25e2
gnu: r-cardelino: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.4.0.

Change-Id: I3f06c5b266bd6d4ae09da8ebb91743cb57468746
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c2460ad512
gnu: r-breakpointr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.20.0.

Change-Id: I1598b330dbcf5b78ba9fc7623892870d1899233c
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
44765e6f2c
gnu: r-biocgenerics: Update to 0.48.1.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.48.1.

Change-Id: Ia2721e9ecbc2f4649962c4b4b5297616fbb5b169
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
278a436a00
gnu: r-biocversion: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.0.

Change-Id: Ic343f3a797330ae85ce86166805189d5738107f2
2023-11-03 22:49:12 +01:00