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136036 commits

Author SHA1 Message Date
Ricardo Wurmus
e6522075ec
gnu: r-structuralvariantannotation: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.20.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If835644b8f25b491953270d4de43bc52295c6a1d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
7f5b5e9b11
gnu: r-structstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structstrings): Update to 1.20.0.

Change-Id: Idd71d968a31bb85fac334a635c0084bfadb569c3
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
ba92e738d3
gnu: r-stringdb: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.0.

Change-Id: I8ab6ff63f94f4d6e9c8b9bfa7b8017030a55bfef
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e13e3edd17
gnu: r-stager: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.26.0.

Change-Id: Ie5eab32c083443149be319d92d8025aea9b00fb4
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
11d71e1831
gnu: r-spectra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.0.

Change-Id: I473834e66f7d6a2721a71bafe17b1b3797f469c0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
a23a4ca88e
gnu: r-slingshot: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.12.0.

Change-Id: Ic7cdd2989054686a0e204c1a7c5f824241395506
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
30ddcaad69
gnu: r-scds: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.20.0.

Change-Id: I1b2a63d6110e84f2afa0814e63d7d51ce7b60cf9
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
f8940f24c6
gnu: r-trnadbimport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.22.0.

Change-Id: I0414b8517d6fb685b031b0f4db9a1d12887f1b96
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
0f1d300f88
gnu: r-trna: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trna): Update to 1.22.0.

Change-Id: I8963719a1115e1c5ee4994e41a1aa54bc22fcaad
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
cda28c3a25
gnu: r-trajectoryutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.12.0.

Change-Id: I34fe4ddcfefbc5e630b980a1f5efa95651b57d4d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
13510c9f98
gnu: r-transcriptr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.32.0.

Change-Id: Ia667543961c1512ada20fe9c52e3e7ed09d0f65e
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
014cb61aec
gnu: r-trackviewer: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.40.0.
[propagated-inputs]: Remove r-graph and r-rgraphviz; add r-igraph and r-txdbmaker.

Change-Id: I90fbb82ff3261d78d5a34398319032f18068fe6a
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e5db1eda48
gnu: r-toast: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-toast): Update to 1.18.0.

Change-Id: Id9859f9e2cdb7ca883851dfe6898d1303a352a38
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
aba6649da3
gnu: r-tkwidgets: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.82.0.

Change-Id: I8651a8b1266c181aac615895c9f39380f0351057
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
643ef0df61
gnu: r-tcgautils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.24.0.

Change-Id: Ie461dd5c2e2799c6cd32cc5e88a13337bcf82096
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
d77e1f3c10
gnu: r-singscore: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.24.0.

Change-Id: I8e7b85d05a7e9f7d4e724dc5de30cdab5dc23e57
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
6f901f6078
gnu: r-simplifyenrichment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.14.0.

Change-Id: Ie857137bb1320f3720b005a3f85b9af5b91f921e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
1140cfd70c
gnu: r-sictools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.34.0.

Change-Id: I99b7c71edd1eb82ee8b2430de49559713b7b190a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
04949bab4a
gnu: r-shortread: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.62.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If2d4d238f239f2acda2f8bffc29851dbfa5e6242
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
3919266295
gnu: r-shinymethyl: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.40.0.

Change-Id: Ifb3c81587b465500bc09e05da2d3dc8f0ca360b5
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
19da768a9f
gnu: r-sesame: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.0.

Change-Id: I0efac0bf86ee98a8e75fc27c4deebeeb3b285501
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
18b93942a1
gnu: r-seqpattern: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.36.0.

Change-Id: I34fdeb5b2c758a61d3c51b661c3f368962041a7b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
28ec187b57
gnu: r-seqlogo: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.70.0.

Change-Id: I201297ab8f83e29de02014ec4e714ea9660a9f7d
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
c85aa7b104
gnu: r-seqarray: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.44.0.

Change-Id: I056ebc6080d3a2d82c2f1a2ffcc45d5c6bfdbb9e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
a1b6df6cf7
gnu: r-scry: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.16.0.

Change-Id: I47c4da2763a994a1763eca403597b41b4514852e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
5ac1127f4a
gnu: r-scrnaseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.18.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-sce, r-dbi,
r-delayedarray, r-gypsum, r-jsonlite, r-matrix, r-rsqlite, and
r-sparsearray.

Change-Id: Ib72ccf01386df1bc464bea2922e4539968b97805
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
d4094eaef4
gnu: r-screpertoire: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.0.0.
[propagated-inputs]: Remove r-doparallel, r-powertcr, and r-vegan; add r-cubature,
r-evmix, r-ggdendro, r-hash, r-inext, r-quantreg, r-rcpp, r-rjson,
r-s4vectors, r-truncdist, and r-vgam.

Change-Id: I0d2647f9d2cee66503e0d76f4ff913fd5662971c
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
0ddc2665e0
gnu: r-scmap: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.26.0.

Change-Id: I8ca259c16274a11e5767e3d652394144418cb91b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
23dd82f6d0
gnu: r-scdblfinder: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.18.0.

Change-Id: Id0180b229c58d25c67ab45725714a07ced6a4f69
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
b8959272c5
gnu: r-scannotatr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.10.0.

Change-Id: I3f13f54e33f1d615ef234853c425894239031399
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
51093471ce
gnu: r-saturn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.12.0.

Change-Id: I187d36aa6b0a29a12c738e4e1c36c12905d3bbd9
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
dae9e19df4
gnu: r-rtracklayer: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.64.0.
[inputs]: Add curl.
[propagated-inputs]: Remove r-rcurl; add r-curl and r-httr.

Change-Id: I1d5f33e9feb54fa0ce6e8d7b98fca461e8480c06
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
43cced246b
gnu: r-rtcgatoolbox: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.34.0.

Change-Id: I4d1c6d5f1d6dffe4cd5acf074c86eae1e008a44b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
92ed002d7f
gnu: r-rtcga: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.34.0.

Change-Id: I84fa90b4e055fbce4415f25d9638b7579c73eda8
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
d27d69bd4b
gnu: r-rsamtools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.20.0.

Change-Id: I3ac6535dc9dec0530df1ff5f5552539bd7345c2a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
27f6990d05
gnu: r-rhdf5filters: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.16.0.

Change-Id: I8730bd79c8f560ff792ad81d34f07f9e28f114e8
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
2871646f25
gnu: r-rhdf5: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.48.0.
[propagated-inputs]: Remove r-s4vectors.

Change-Id: I106a2b526f6baad8b2ccfa2f0376dc1de6f39598
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
b5c64bf298
gnu: r-reportingtools: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.44.0.

Change-Id: I18c2701eeefd845562b5d0f26a4bdcb847f9aaeb
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
f266dc542f
gnu: r-regioner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.36.0.

Change-Id: I6eb3497c259eb291094fcc18e1e1f2b0d439d483
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
610170b467
gnu: r-rcy3: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.24.0.

Change-Id: I73d35d39e215d2f2bca53be25efd9e30279cfb43
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
e13f15ad19
gnu: r-rcas: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.30.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I4c941340d3f31478744c0fedd36ad171e9fe1170
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
b31da9257b
gnu: r-rbgl: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.80.0.

Change-Id: I73f6c60bd442c6a660406bbc00929784731e7b77
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
9529783d05
gnu: r-protgenerics: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.36.0.

Change-Id: I6742405e19ef294b39bd5e52d200ac6439656692
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
2cdc26b06b
gnu: r-protgear: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.8.0.

Change-Id: Ib25dc0ffb76e81a17b95cd3ace591dea8cca3381
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
f433fb7a41
gnu: r-powertcr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.24.0.

Change-Id: Id89108c25415b044535a8f97d8652e9421f0c244
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
973e3b930b
gnu: r-polyester: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-polyester): Update to 1.39.0.

Change-Id: I9459129d18e6ad150a64c630dfc66827ff66d2b0
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
884574d5f4
gnu: r-piano: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.20.0.

Change-Id: I172d499e19af64eedd5a1a6a224c0e3712607804
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
c112c15aa4
gnu: r-pfamanalyzer: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.4.0.

Change-Id: I43cc527998df850b53d3f9ab50dabc528df4f966
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
c7f7ce8c9d
gnu: r-pcamethods: Update to 1.96.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.96.0.

Change-Id: I6443fc5882c1ea7b24580802a6463de3928ded05
2024-05-08 12:53:25 +02:00
Ricardo Wurmus
cc2d111ba5
gnu: r-pcaexplorer: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.30.0.

Change-Id: I86c2dc6da62836bcf896f1806379aeaccd0acd8a
2024-05-08 12:53:25 +02:00