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Author SHA1 Message Date
Ricardo Wurmus
1acf3f1821
gnu: r-ideoviz: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
b0a2fc9253
gnu: r-bluster: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus
35ccf99fff
gnu: r-delayedarray: Update to 0.20.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
7cc053eaca
gnu: r-deepsnv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
628a8f8c78
gnu: r-decipher: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
07b14e81f9
gnu: r-cummerbund: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
9d51c1f423
gnu: r-coverageview: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
3622390699
gnu: r-biocgenerics: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
6ed26516bf
gnu: r-biocversion: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus
4a92ab58f6
gnu: Add r-msfeatures. 
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
22b568de43
guix: Upgrade to Bioconductor 3.14. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.14.
* guix/import/cran.scm (%bioconductor-version): Same.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
92b85194cd
gnu: r-with-tests: Update patch to DESCRIPTION file. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and
spaces in DESCRIPTION file to ensure reproducible build.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
108111114d
gnu: r-with-tests: Remove trailing #T. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Remove trailing #T
from build phases.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus
17d0bbef88
gnu: r-with-tests: Update to 4.1.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.2.
 2021-11-07 22:34:29 +00:00
Thorsten Wilms
bd41e590dd
gnu: ardour: Update to 6.9. 
* gnu/packages/audio.scm (ardour): Update to 6.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-07 23:10:41 +01:00
Ludovic Courtès
859122e5ab
shell: Actually clean up the profile cache. 
Previously, most actions would leave the cache as-is because
'guix-environment*' would indirectly call 'exit', and thus its
continuation was never reached.

* guix/scripts/shell.scm (guix-shell): Move call to
'maybe-remove-expired-cache-entries' to EXIT-HOOK.
 2021-11-07 23:10:41 +01:00
Xinglu Chen
b999c80c2e
import: egg: Allow imports of a specific version. 
* guix/import/egg.scm (eggs-repository): Change URL.
(egg-metadata): Accept optional #:version keyword argument.
(egg->guix-package): Accept ‘version’ argument.
(egg-recursive-import): Add ‘version’ argument and honor it.
* guix/scripts/import/egg.scm (guix-import-egg): Parse a specification instead
of just a package name.
* doc/guix.texi (Invoking guix import): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-07 23:10:41 +01:00
Xinglu Chen
2f665d4309
doc: Improve documentation of the Bash home service 
* doc/guix.texi (Shells Home Services): Document ‘home-bash-extension’
  configuration record.
* gnu/home/services/shells.scm (generate-home-bash-documentation): Extract
  docstrings from ‘home-bash-extension’.
  (home-bash-configuration): Expound on docstrings.
  (home-bash-extension): Likewise.

Fixes: <https://issues.guix.gnu.org/50991>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-07 23:10:41 +01:00
Xinglu Chen
4b96998292
home: services: bash: Add ‘aliases’ field. 
* doc/guix.texi (Shells Home Services): Document it.
* gnu/home/services/shells.scm (bash-serialize-aliases): New procedure.
(home-bash-configuration, home-bash-extension): Add ‘aliases’ field.
(home-bash-extensions): Adjust accordingly.
* guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate
the ‘alias’ field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-07 23:10:41 +01:00
Ludovic Courtès
5eb5c0789f
file-systems: Validate the 'flags' field. 
Fixes <https://issues.guix.gnu.org/51425>.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.

* gnu/system/file-systems.scm (invalid-file-system-flags)
(%validate-file-system-flags): New procedures.
(validate-file-system-flags): New macro.
(<file-system>)[flags]: Add 'sanitize' property.
 2021-11-07 23:10:41 +01:00
Ludovic Courtès
4d59596a1c
ui: 'load*' correctly reports 'read-error' in all cases. 
Previously, 'read-error' exceptions other than "missing closing paren"
would not be reported; instead, we'd directly call (exit 1) without
printing anything.

Fixes <https://issues.guix.gnu.org/51463>.
Reported by Alice BRENON <alice.brenon@ens-lyon.fr>.

* guix/ui.scm (report-load-error): Report the error without re-throwing
upon 'read-error'.
* tests/guix-build.sh: Add test.
 2021-11-07 23:10:41 +01:00
Brendan Tildesley
dab2ac2ed5
gnu: 0ad: Update to 0.0.25b-alpha. 
* gnu/packages/games.scm (0ad-data): Update to 0.0.25b-alpha.
Unpack .zip files without need for a snippet.
(0ad): Update to 0.0.25b-alpha.
[arguments]<#:phases>: Properly unbundle cxxtest. Respect #:tests?.
Install Freedesktop mimeinfo.
Install icon to hicolor theme instead of share/pixmaps, which I don't
think is used.
<#:tests> Disable tests for now since they don't run.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-11-07 22:57:05 +01:00
Tobias Geerinckx-Rice
90cd653abe
gnu: ansible-core: Update to 2.11.6. 
* gnu/packages/admin.scm (ansible-core): Update to 2.11.6.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
031906be76
gnu: xfstests: Update to 1.1.0-1.bae1d15. 
* gnu/packages/file-systems.scm (xfstests): Update to 1.1.0-1.bae1d15.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
6a36f4e4fc
gnu: lv2: Update to 1.18.2. 
* gnu/packages/audio.scm (lv2): Update to 1.18.2.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
c569c735c2
gnu: jalv: Update to 1.6.6. 
* gnu/packages/audio.scm (jalv): Update to 1.6.6.
 2021-11-07 22:52:43 +01:00
Tobias Geerinckx-Rice
b331ee62f5
gnu: lilv: Update to 0.24.12. 
* gnu/packages/audio.scm (lilv): Update to 0.24.12.
[arguments]: Don't explicitly return #t from phases.
 2021-11-07 22:52:42 +01:00
Tobias Geerinckx-Rice
55bef80580
gnu: dvdisaster: Remove uninstallation script. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add a new
'remove-uninstall-script phase.
 2021-11-07 22:52:42 +01:00
Tobias Geerinckx-Rice
153d9bca72
gnu: dvdisaster: Update to 0.79.9. 
* gnu/packages/cdrom.scm (dvdisaster): Update to 0.79.9.
[source, home-page]: Update home page.
[arguments]: Don't explicitly return #t from phases.
 2021-11-07 22:52:42 +01:00
Felix Gruber
92af2ec5d0
gnu: openttd: Fix build failure. 
* packages/games.scm (openttd)[native-inputs]: Use gcc-9 to fix build
  failure.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
c9b9919858
gnu: openttd-openmsx: Update to 0.4.2. 
* packages/games.scm (openttd-openmsx): Update to 0.4.2.
  [native-inputs]: Replace python-2 with python-wrapper.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
574f4b7d3f
gnu: openttd-opensfx: Update to 1.0.2. 
* packages/games.scm (openttd-opensfx): Update to 1.0.2.
  [native-inputs]: Replace python-2 with python.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:37 +01:00
Felix Gruber
c2759211fc
gnu: openttd-opengfx: Update to 7.1. 
* packages/games.scm (openttd-opengfx): Update to 7.1.
  [native-inputs]: Replace python-2 with python.
  [arguments]: Use cc-for-target.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:36 +01:00
Felix Gruber
b6bb7720eb
gnu: openttd-engine: Update to 12.0. 
* gnu/packages/games.scm (openttd-engine): Update engine to 12.0.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-11-07 22:13:36 +01:00
Arun Isaac
2ebadb390e
gnu: Add weechat-wee-slack. 
* gnu/packages/messaging.scm (weechat-wee-slack): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:58:03 +02:00
Arun Isaac
7ebed0cdc8
gnu: Add weechat-matrix. 
* gnu/packages/messaging.scm (weechat-matrix): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:50:32 +02:00
Arun Isaac
73679a6837
gnu: Add python-webcolors. 
* gnu/packages/python-web.scm (python-webcolors): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:50:27 +02:00
Vinicius Monego
6e3eba9d1f
gnu: Add rust-log4rs-1. 
* gnu/packages/crates-io.scm (rust-log4rs-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:48 +02:00
Vinicius Monego
b76b29957e
gnu: Add rust-log-mdc-0.1. 
* gnu/packages/crates-io.scm (rust-log-mdc-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:46 +02:00
Vinicius Monego
e9eb6b1102
gnu: Add rust-diffus-0.10. 
* gnu/packages/crates-io.scm (rust-diffus-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:44 +02:00
Vinicius Monego
38912f139f
gnu: Add rust-diffus-derive-0.10. 
* gnu/packages/crates-io.scm (rust-diffus-derive-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:43 +02:00
Vinicius Monego
551e39ccb1
gnu: Add rust-snake-case-0.3. 
* gnu/packages/crates-io.scm (rust-snake-case-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:41 +02:00
Vinicius Monego
cd968c83aa
gnu: Add rust-xmltree-0.10. 
* gnu/packages/crates-io.scm (rust-xmltree-0.10): New variable.
(rust-xmltree-0.8): Inherit from above.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:39 +02:00
Vinicius Monego
9bf3bc8418
gnu: Add rust-color-backtrace-0.5. 
* gnu/packages/crates-io.scm (rust-color-backtrace-0.5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:28:37 +02:00
Efraim Flashner
3e6f857354
gnu: x42-plugins: Prepare for cross-compiling. 
* gnu/packages/music.scm (x42-plugins)[arguments]: Remove
'set-CC-variable phase. Use cc-for-target in make-flags.
 2021-11-07 22:25:23 +02:00
Thorsten Wilms
6f45418416
gnu: x42-plugins: Update to 20211016. 
* gnu/packages/music.scm (x42-plugins): Update to 20211016.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-07 22:21:20 +02:00
Tobias Geerinckx-Rice
071f4e3db3
guix-install.sh: Undo some bugs introduced by shellcheck. 
* etc/guix-install.sh: Unquote all file names containing ~root.
 2021-11-07 20:09:59 +01:00
Marius Bakke
a0f1476e8f
gnu: emacs-stream: Don't set a source file name. 
This is a follow-up to 678248f5ea.

* gnu/packages/emacs-xyz.scm (emacs-stream)[source]: Remove FILE-NAME, as the
tarball name is already OK; and the -checkout name breaks build system
assumptions on the core-updates branch.
 2021-11-07 14:20:41 +01:00