Commit graph

80858 commits

Author SHA1 Message Date
Ludovic Courtès
6623d1cd7f
gnu: python-numpy, python-scipy: Remove dependency on lapack.
The dependency on lapack was unused; the LAPACK interface of OpenBLAS is
used instead.  The dependency on lapack was added in
cba256f8fa (numpy) and
719b01c157 (scipy).

* gnu/packages/python-science.scm (python-scipy)[inputs]: Remove
LAPACK.
* gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise.
2021-06-22 17:55:05 +02:00
Ludovic Courtès
b9a95420ab
profiles: Build union of inputs in the right order.
Fixes <https://bugs.gnu.org/49102>.
Reported by Mathieu Othacehe <othacehe@gnu.org>
and Tobias Geerinckx-Rice <me@tobias.gr>.

Fixes a regression introduced in
8cef92d063, whereby in case of file
collisions, the "wrong" one would take precedence.

* guix/build/profiles.scm (manifest-sexp->inputs+search-paths): Perform
a breadth-first traversal.  Reverse INPUTS and SEARCH-PATHS in the base
case.
* tests/profiles.scm ("profile-derivation, ordering & collisions"):
New test.
2021-06-22 17:55:05 +02:00
Ludovic Courtès
c7a5c3e0bb
gnu: petsc: Link against OpenBLAS rather than LAPACK.
OpenBLAS performs better than LAPACK, the reference implementation.
This is also consistent with the choice of BLAS/LAPACK implementations
made in most other packages.

* gnu/packages/maths.scm (petsc)[inputs]: Replace LAPACK by OPENBLAS.
[arguments]: Pass "--with-openblas=1".
2021-06-22 17:55:05 +02:00
Nicolas Goaziou
7c5d50f431
gnu: python-pikepdf: Update to 2.13.0.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.13.0.
2021-06-22 17:42:15 +02:00
Marius Bakke
a5e6b705ac
gnu: python-pika: Update to 1.2.0.
* gnu/packages/python-xyz.scm (python-pika): Update to 1.2.0.
[source]: Change to GIT-FETCH.
[arguments]: New field.  Override and disable tests.
[native-inputs]:  Remove PYTHON-PYEV.  Add PYTHON-MOCK, PYTHON-NOSE, and
PYTHON-GEVENT.
(python2-pika): Remove variable.
2021-06-22 17:21:34 +02:00
Vinicius Monego
33fa648f75
gnu: libngspice: Delete autogenerated config.h.
* gnu/packages/engineering.scm (libngspice)[arguments]<#:phases>: Rename phase
  'delete-script-files to 'delete-scripts-and-config and delete config.h.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-22 16:43:49 +02:00
Vinicius Monego
e22a711c97
gnu: libngspice: Fix KiCad compilation.
* gnu/packages/engineering.scm (libngspice)[arguments]<#:configure-flags>:
  Pass "--with-readline=no".
  [inputs]: Remove readline.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-22 16:42:55 +02:00
Julien Lepiller
347846ea86
gnu: java-kafka-clients: Disable failing test.
* gnu/packages/java.scm (java-kafka-clients): Disable a test that fails
non-deterministically.
2021-06-22 14:27:20 +02:00
Julien Lepiller
1b1eeb3b12
gnu: java-jmh: Switch to maven-build-system.
* gnu/packages/java.scm (java-jmh): Switch to maven-build-system.
2021-06-22 13:11:02 +02:00
Julien Lepiller
901d48cc17
gnu: java-jmh: Update to 1.32.
* gnu/packages/java.scm (java-jmh): Update to 1.32.
[source]: Switch to the git repository.
2021-06-22 13:10:59 +02:00
Julien Lepiller
98d2ba1a5a
gnu: maven-enforcer-parent-pom: Fix pom.
* gnu/packages/maven.scm (maven-enforcer-parent-pom): Fix dependency
versions in pom file.
2021-06-22 13:10:45 +02:00
Julien Lepiller
b6b9668949
gnu: maven-core: Hardcode versions we have in Guix.
* gnu/packages/maven.scm (maven-core)[phases]: Replace default hardcoded
versions by versions of packages we have in Guix.
2021-06-22 13:10:43 +02:00
Julien Lepiller
8874108386
gnu: java-commons-math3: Install to maven repository.
* gnu/packages/java.scm (java-commons-math3)[phases]: Use
install-from-pom.
2021-06-22 13:10:40 +02:00
Julien Lepiller
01706f6e00
gnu: Add java-jopt-simple-4.
* gnu/packges/java.scm (java-jopt-simple-4): New variable.
(java-jopt-simple): Install to maven repository structure.
2021-06-22 13:10:38 +02:00
Julien Lepiller
7f902d368d
guix: java-utils: Look for actual jar files.
* guix/build/java-utils.scm (install-from-pom): Fix `find-files` to look
only for jar files.
2021-06-22 13:10:36 +02:00
Julien Lepiller
cc09453862
guix: maven: Use a temporary file to fix pom files.
* guix/build/maven/pom.scm (fix-pom-dependencies): Actually use the
temporary file that was created.
2021-06-22 13:10:32 +02:00
Julien Lepiller
5bb3395c42
guix: maven: Look in local packages when searching for package version.
* guix/build/maven/pom.scm (fix-pom-dependencies): Also look at local
packages when looking for a package version.
2021-06-22 13:10:30 +02:00
Julien Lepiller
0db1393b73
guix: maven: Support fixing modules.
* guix/build/maven/pom.scm (fix-pom-dependencies): Support fixing
modules that do not exist.
* guix/build/maven-build-system.scm (fix-pom): Fix modules.
2021-06-22 13:10:28 +02:00
Julien Lepiller
9711970c99
guix: maven: Support fixing extensions.
* guix/build/maven/pom.scm (fix-pom-dependencies): Add support for fixing
extension versions.
2021-06-22 13:10:27 +02:00
Julien Lepiller
6ec2109ab6
guix: maven: Simplify finding local packages and modules.
* guix/build/maven-build-system (fix-pom): Fix a single pom file without
recursing
(fix-pom-files): Find local packages and all submodules, and fix them
all at once.
(add-local-package): Move to...
* guix/build/maven/pom.scm (add-local-package): ...here.
(pom-and-submodules, pom-local-packages): New procedures.
2021-06-22 13:10:24 +02:00
Julien Lepiller
573b43c116
guix: maven: Simplify finding version and group information.
* guix/build/maven/pom.scm (pom-version, pom-groupid): Do not use inputs
and local packages information anymore. Adapt file to new arguments.
* guix/build/maven-build-system.scm: Adapt to new arguments.
* guix/build/java-utils.scm: Adapt to new arguments.
2021-06-22 13:09:57 +02:00
Julien Lepiller
4c98db94b0
guix: java-utils: Factorize pom.xml generation.
* guix/build/java-utils.scm (generate-pom.xml): New procedure.
* gnu/packages/maven.scm (java-surefire-junit4): Use it.
* gnu/packages/java.scm (java-qdox, java-jsr250, java-jsr305)
(java-aopalliance, java-jboss-el-api-spec)
(java-jboss-interceptors-api-spec): Use it.
(java-qdox-M9): Ensure the generated pom file has the correct version.
2021-06-22 13:09:41 +02:00
Pierre Neidhardt
a40207bd6f
gnu: nyxt: Update to 2.1.0.
* gnu/packages/web-browsers.scm (nyxt): Update to 2.1.0.
2021-06-22 12:58:43 +02:00
Efraim Flashner
d89ef8a7d8
gnu: libreoffice: Update to 7.1.4.2.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Add box2d, dtoa.
[arguments]: Adjust custom 'prepare-src, 'bin-and-desktop-install phases.
Add custom 'insert-external-tarballs phase. Adjust configure-flags to
build without skia. Remove deprecated make-flag
2021-06-22 13:51:11 +03:00
Efraim Flashner
4aae607119
gnu: orcus: Update to 0.16.1.
* gnu/packages/libreoffice.scm (orcus): Update to 0.16.1.
2021-06-22 13:51:11 +03:00
Efraim Flashner
e1f5517c46
gnu: orcus: Don't build static library.
* gnu/packages/libreoffice.scm (orcus)[arguments]: Add configure-flag to
skip static library.
2021-06-22 13:51:11 +03:00
Efraim Flashner
cb180427d0
gnu: ixion: Update to 0.16.1.
* gnu/packages/libreoffice.scm (ixion): Update to 0.16.1.
2021-06-22 13:51:11 +03:00
Efraim Flashner
3623696db1
gnu: ocaml-uri: Use a source file-name.
* gnu/packages/ocaml.scm (ocaml-uri)[source]: Add a file-name field.
2021-06-22 13:49:06 +03:00
Efraim Flashner
27f2b79db3
gnu: emacs-shell-command+: Use a source file-name.
* gnu/packages/emacs-xyz.scm (emacs-shell-command+)[source]: Add a
file-name field.
2021-06-22 13:49:05 +03:00
Efraim Flashner
07d2c72d39
gnu: ensembl-vep: Use a source file-name.
* gnu/packages/bioinformatics.scm (ensembl-vep)[source]: Add a file-name
field.
2021-06-22 13:49:05 +03:00
Efraim Flashner
920a36392a
gnu: Add box2d.
* gnu/packages/game-development.scm (box2d): New variable.
2021-06-22 13:49:05 +03:00
Efraim Flashner
bc6c99e52c
gnu: libreoffice: Add vendor string.
Previously: This release was supplied by nixbld.
Now:        This release was supplied by GNU Guix.

* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Add
configure-flag to set vendor to 'GNU Guix'.
2021-06-22 13:49:02 +03:00
Vinicius Monego
e88f205876
gnu: Add rust-battery-0.7.
* gnu/packages/crates-io.scm (rust-battery-0.7): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 11:02:01 +02:00
Vinicius Monego
d07bade71e
gnu: rust-lazycell-1: Update to 1.3.0.
* gnu/packages/crates-io.scm (rust-lazycell-1): Update to 1.3.0.
[arguments]: Remove #:skip-build.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 11:00:11 +02:00
Vinicius Monego
2de5297a08
gnu: Add rust-mach-0.3.
* gnu/packages/crates-io.scm (rust-mach-0.3): New variable.
(rust-mach-0.2): Inherit from above.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:59:52 +02:00
Vinicius Monego
f80f7329ce
gnu: Add rust-uom-0.30.
* gnu/packages/crates-io.scm (rust-uom-0.30): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:59:42 +02:00
Vinicius Monego
400f1caf3f
gnu: Add rust-uom-0.31.
* gnu/packages/crates-io.scm (rust-uom-0.31): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:59:27 +02:00
Vinícius dos Santos Oliveira
9ba41ea823
gnu: emilua: Update to 0.3.2.
* gnu/packages/lua.scm (emilua): Update to 0.3.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:54:16 +02:00
Sharlatan Hellseher
17972082cc
gnu: Add gopkg.in/yaml.v3.
* gnu/packages/golang.scm (go-gopkg-in-yml-v3): New variable

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:51:22 +02:00
Nicolas Goaziou
61a9ba398f
gnu: widelands: Update description.
* gnu/packages/games.scm (widelands)[description]: Update to mirror changes in
the stable release.
2021-06-22 10:39:40 +02:00
Nicolas Goaziou
662316b0d6
gnu: widelands: Ensure Guix catches versioning scheme switch.
* gnu/packages/games.scm (widelands-21): New variable.

"21" was the last beta release.  Upstream has now switched to a new versioning
scheme, with lesser numbers.
2021-06-22 10:35:58 +02:00
Felix Gruber
b6fc274637
gnu: widelands: Update to 1.0.
* gnu/packages/games.scm (widelands): Update to 1.0.
[source]: Download from github as there is no tarball for v1.0 on their
website.
[inputs]: Add curl.
* gnu/packages/patches/widelands-system-wide_minizip.patch: Adjust for
1.0. CmakeLists.txt now already defines CMAKE_MODULE_PATH, so I've moved
FindMinizip.cmake to this path.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-22 10:27:21 +02:00
Ricardo Wurmus
44bccf414b
gnu: Add perl-cworld-dekker.
* gnu/packages/bioinformatics.scm (perl-cworld-dekker): New variable.
2021-06-22 08:40:56 +02:00
Ricardo Wurmus
14f72bd48d
gnu: python-ddt: Update to 1.4.2.
* gnu/packages/python-xyz.scm (python-ddt): Update to 1.4.2.
2021-06-22 08:34:51 +02:00
Nicolas Goaziou
d534d076f0
gnu: emacs-which-key: Update to 3.5.3.
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.3.
2021-06-22 07:58:57 +02:00
Raghav Gururajan
adf485c815
gnu: dino: Enable some features.
* gnu/packages/messaging.scm (dino): Add comments for v0.3.0 release.
[inputs]: Add gspell and icu4c.
2021-06-22 01:02:01 -04:00
Raghav Gururajan
43cec0d117
gnu: dino: Add missing inputs.
These new inputs are referenced by the package but was missing in
the package definition. Some of these inputs might have been used
by the package indirectly via propagation from other inputs.

* gnu/packages/messaging.scm (dino)[native-inputs]: Add gobject-introspection.
[inputs]: Add atk, cairo, gdk-pixbug+svg, libnice and pango.
2021-06-22 01:01:57 -04:00
Raghav Gururajan
e3a468b206
gnu: dino: Remove duplicate inputs.
* gnu/packages/messaging.scm (dino)[inputs]: Remove duplicate gpgme,
gtk+, glib-networking and gsettings-desktop-schemas.
2021-06-22 01:01:11 -04:00
Marius Bakke
a1c7537548
gnu: uBlock Origin: Update to 1.36.0.
* gnu/packages/browser-extensions.scm (uassets): Update to 20d21ad7e.
(ublock-origin): Update to 1.36.0.
2021-06-22 00:09:40 +02:00
Marius Bakke
a03912ed86
gnu: ungoogled-chromium: Update to 91.0.4472.114-0.a9eb6fd.
* gnu/packages/chromium.scm (%chromium-version): Set to 91.0.4472.114.
(%ungoogled-revision): Set to a9eb6fd.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-06-22 00:09:40 +02:00