Commit graph

33142 commits

Author SHA1 Message Date
Ricardo Wurmus
05487ed8e6
gnu: scons: Update to 3.0.4.
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice
4eb57ca883
gnu: Add opensmtpd-next.
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice
380384e419
gnu: ibus: Update Unicode data to 12.0.0.
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
2019-03-10 13:37:18 +01:00
Pierre Neidhardt
2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build.
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
2019-03-09 12:30:24 +01:00
Ricardo Wurmus
7d4cab7473
gnu: Add openfst.
* gnu/packages/machine-learning.scm (openfst): New variable.
2019-03-09 10:43:37 +01:00
Pierre Neidhardt
983550692d
gnu: Add hyperledger-fabric.
* gnu/local.mk (hyperledger): New variable.
2019-03-09 10:15:46 +01:00
Tobias Geerinckx-Rice
373abfb398
gnu: lynis: Update to 2.7.2.
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
7b957a3344
gnu: youtube-viewer: Update to "3.5.4.
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
37fc44eab9
gnu: dovecot: Avoid unnecessary patching.
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
f762e49f28
gnu: dovecot: Indent arguments.
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
7969751f54
gnu: i3lock-color: Update to 2.12.c.
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice
f45cc966ba
gnu: i3lock-color: Don't use unstable tarball.
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice
a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball.
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-09 02:33:30 +01:00
Ricardo Wurmus
74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt.
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
2019-03-08 23:18:56 +01:00
Ricardo Wurmus
8b6acb1f20
gnu: blast+: Update to 2.7.1.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-08 23:00:07 +01:00
Ricardo Wurmus
f87dcb4d75
gnu: Add texlive-latex-pdfx.
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
2019-03-08 21:49:25 +01:00
Ricardo Wurmus
cafd4d387b
gnu: Add texlive-latex-xmpincl.
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
2019-03-08 21:48:19 +01:00
Ricardo Wurmus
847768b9cc
gnu: Add translate2geda.
* gnu/packages/engineering.scm (translate2geda): New variable.
2019-03-08 21:45:29 +01:00
Ricardo Wurmus
a734da8675
gnu: Add rkrlv2.
* gnu/packages/music.scm (rkrlv2): New variable.
2019-03-08 21:02:49 +01:00
Danny Milosavljevic
eb6ef893e8
gnu: fc-host-tools: Update to 10.
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
2019-03-08 19:33:04 +01:00
Efraim Flashner
606c198788
gnu: crawl: Find all the included headers.
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
2019-03-08 17:22:29 +02:00
Efraim Flashner
b89284407f
gnu: crawl: Don't assume system architecture.
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
2019-03-08 17:22:29 +02:00
Efraim Flashner
fc7d6bc60d
gnu: crawl: Build with python3-wrapper.
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
2019-03-08 17:22:26 +02:00
Vagrant Cascadian
fb0aeaacea
gnu: u-boot: Remove openssl input.
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-08 12:31:37 +01:00
Rutger Helling
75f0bda71a
gnu: flatpak: Add more dependencies.
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
2019-03-08 11:50:56 +01:00
Ricardo Wurmus
daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
2019-03-08 09:30:00 +01:00
Ricardo Wurmus
183b6575e7
gnu: r-mzr: Update to 2.16.2.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
6453d7aecc
gnu: r-gviz: Update to 1.26.5.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
101dcc29d3
gnu: r-ensembldb: Update to 2.6.7.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d3713237c5
gnu: r-annotationhub: Update to 2.14.4.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
53e7f028ed
gnu: r-rhtslib: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d493043daf
gnu: r-rtracklayer: Update to 1.42.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus
57f40dc220
gnu: r-rsamtools: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus
58209b1e21
gnu: r-biocparallel: Update to 1.16.6.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus
cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus
fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus
8972989e10
gnu: r-dexseq: Update to 1.28.2.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice
792d3ed7eb
gnu: man-pages: Update to 5.00.
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice
13b1fb5c92
gnu: dovecot: Update to 2.3.5.
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice
2fa1a3a808
gnu: dovecot: Don't use NAME in source URI.
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
2019-03-08 01:34:40 +01:00
Ricardo Wurmus
933dad9156
gnu: Add mruby.
* gnu/packages/ruby.scm (mruby): New variable.
2019-03-08 00:07:45 +01:00
Ricardo Wurmus
20662a3020
gnu: r-ggmap: Update to 3.0.0.
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus
8f37f53837
gnu: r-readxl: Update to 1.3.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus
f544ab3379
gnu: r-sys: Update to 3.0.
* gnu/packages/cran.scm (r-sys): Update to 3.0.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus
790db519f4
gnu: r-servr: Update to 0.13.
* gnu/packages/cran.scm (r-servr): Update to 0.13.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus
e89d54278d
gnu: r-flextable: Update to 0.5.1.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus
e190d9af6c
gnu: r-proxy: Update to 0.4-23.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
bef78244de
gnu: r-haven: Update to 2.1.0.
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
59c513422c
gnu: r-emdbook: Update to 1.3.11.
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
937e15571c
gnu: r-rmysql: Update to 0.10.17.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
2170a36c3b
gnu: r-gower: Update to 0.2.0.
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
532b359865
gnu: r-jomo: Update to 2.6-7.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus
d2cd541cc7
gnu: r-mice: Update to 3.4.0.
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
22777c8657
gnu: r-xfun: Update to 0.5.
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
87bb1b8c9e
gnu: r-metap: Update to 1.1.
* gnu/packages/cran.scm (r-metap): Update to 1.1.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
d8787b3387
gnu: r-ifultools: Update to 2.0-5.
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9.
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
00fb320392
gnu: r-later: Update to 0.8.0.
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
8b2c80b8a3
gnu: r-vim: Update to 4.8.0.
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
b9b1041324
gnu: r-fnn: Update to 1.1.3.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus
ea010aa31e
gnu: r-arules: Update to 1.6-3.
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
f5ce1dcce2
gnu: r-zip: Update to 2.0.0.
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
bbe9421174
gnu: r-maptools: Update to 0.9-5.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
d3f22f0aea
gnu: r-reticulate: Update to 1.11.1.
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
fd1a17a522
gnu: r-officer: Update to 0.3.3.
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
7754557090
gnu: r-prediction: Update to 0.3.6.2.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3.
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
1007b1b6d2
gnu: r-slam: Update to 0.1-45.
* gnu/packages/cran.scm (r-slam): Update to 0.1-45.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus
a431c38166
gnu: r-hash: Update to 2.2.6.1.
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.1.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
a6a87db8ce
gnu: r-dvmisc: Update to 1.1.3.
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3.
[propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2,
r-mvtnorm, r-pracma, r-purrr, and r-survey.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
5093cbdc04
gnu: r-summarytools: Update to 0.9.2.
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.2.
[propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
b1f39e8c38
gnu: r-multcomp: Update to 1.4-10.
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-10.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
e0f861649c
gnu: r-emmeans: Update to 1.3.3.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.3.
[propagated-inputs]: Add r-numderiv.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
e2fee46f04
gnu: r-afex: Update to 0.23-0.
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
f18ca07eef
gnu: r-lmertest: Update to 3.1-0.
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
91f0b745f6
gnu: r-ks: Update to 1.11.4.
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
2019-03-07 23:52:40 +01:00
Ricardo Wurmus
0b14b100a2
gnu: r-tidytree: Update to 0.2.4.
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
4bc5d45144
gnu: r-bigrquery: Update to 1.1.0.
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
8a05d17037
gnu: r-gmp: Update to 0.5-13.4.
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
7706a98cda
gnu: r-huge: Update to 1.3.0.
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
f59cdeaf25
gnu: r-igraph: Update to 1.2.4.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
6caf80fbaf
gnu: r-lme4: Update to 1.1-21.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
34a98f79d7
gnu: r-forcats: Update to 0.4.0.
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus
6a0a2342dd
gnu: r-r6: Update to 2.4.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
4b16c00e9a
gnu: r-formatr: Update to 1.6.
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
1f7a76a0c1
gnu: r-evaluate: Update to 0.13.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
48a4b775b9
gnu: r-mgcv: Update to 1.8-27.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
71fe7f9d21
gnu: r-stringi: Update to 1.3.1.
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
605fcf8a23
gnu: r-stringr: Update to 1.4.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
17abcd521a
gnu: r-ranger: Update to 0.11.2.
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
9066534d4c
gnu: r-openssl: Update to 1.2.2.
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus
a1d9387d82
gnu: r-catools: Update to 1.17.1.2.
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus
4fadef3ba0
gnu: r-xml: Update to 3.98-1.19.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus
bc7895e1cf
gnu: r-flexmix: Update to 2.3-15.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus
6be62a5a72
gnu: r-irlba: Update to 2.3.3.
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus
b22a20405a
gnu: r-registry: Update to 0.5-1.
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus
3db71d065c
gnu: r-r-utils: Update to 2.8.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
2019-03-07 23:52:37 +01:00