Commit graph

114397 commits

Author SHA1 Message Date
Ricardo Wurmus
9a2908211c
gnu: r-coin: Delete file with bad encoding.
* gnu/packages/cran.scm (r-coin)[arguments]: Add phase
'remove-test-file-with-latin-encoding.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
63dea3caf0
gnu: r-cplm: Fix build with R 4.3.0.
* gnu/packages/cran.scm (r-cplm)[arguments]: Update headers to find definition
for GET_SLOT.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0.
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0d879deae1
gnu: r-megadepth: Update to 1.9.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c09a9bc427
gnu: r-ballgown: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e5e7089db5
gnu: r-guitar: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3616dd923f
gnu: r-chromstar: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1b3be92024
gnu: r-snpstats: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
72288df46a
gnu: r-snapcgh: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
61432d53ff
gnu: r-pathview: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
ef6059cf27
gnu: r-ldblock: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0.
[propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb,
r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add
r-rlang.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c00d4a394d
gnu: r-kegggraph: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
70514e0281
gnu: r-gwascat: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.32.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e8a52e54f7
gnu: r-gviz: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
311339801e
gnu: r-ggbio: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.48.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
764220f848
gnu: r-erma: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.16.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bc7db31ceb
gnu: r-catalyst: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.24.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
d1e16723dd
gnu: r-msmstests: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.38.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0d854ac754
gnu: r-msmseda: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bca0afda01
gnu: r-biocio: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6459537f90
gnu: r-msfeatures: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.8.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f4c4bc5473
gnu: r-mscoreutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.12.0.
2023-04-29 20:28:06 +02:00