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Author SHA1 Message Date
Ricardo Wurmus
e58d3a5926
gnu: apache-arrow: Update to 0.10.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
 2019-03-18 23:46:27 +01:00
ng0
47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Leo Famulari
e3900a4d64
build-system/go: Build with a filesystem union of Go dependencies. 
This basically changes (guix build-system go) so that instead of looking
up its dependencies in a list of directories in $GOPATH, all the
Go dependencies are symlinked into a single directory.

Fixes <https://bugs.gnu.org/33620>.

* guix/build/go-build-system.scm (setup-go-environment): New variable.
(setup-environment, install-source): Remove variables.
(unpack): Unpack the source relative to $GOPATH.
(install): Do not install the compiled objects in the 'pkg' directory.
Install the source code in this phase, and only install the source of
the package named by IMPORT-PATH.
* doc/guix.texi (Build Systems): Adjust accordingly.
* gnu/packages/docker.scm (docker): Import (guix build union) on the build side
and adjust to build phase name changes in (guix build-system go).
* gnu/packages/shellutils.scm (direnv): Likewise.
* gnu/packages/databases.scm (mongo-tools)[arguments]:
Set '#:install-source #f'.
* gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts'
phase after the 'install' phase.
 2019-03-14 15:34:26 -04:00
Tobias Geerinckx-Rice
5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page. 
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice
6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice
909404b571
gnu: python-sql: Update to 1.0.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
99e690a59a
gnu: python-pyodbc: Update to 4.0.25. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
72b7de49b4
gnu: python-psycopg2: Update to 2.7.7. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice
2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Marius Bakke
5ae458befc
gnu: rocksdb: Update to 5.18.3. 
* gnu/packages/databases.scm (rocksdb): Update to 5.18.3.
 2019-03-04 22:20:08 +01:00
Julien Lepiller
865c76ea3b
gnu: python-rq: Update to 0.13.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.13.0.
 2019-03-04 21:52:33 +01:00
Julien Lepiller
dcbe674c86
gnu: python-redis: Update to 3.2.0. 
* gnu/packages/databases.scm (python-redis): Update to 3.2.0.
 2019-03-04 21:52:17 +01:00
Marius Bakke
97dcedbd2a
gnu: tdb: Update to 1.3.18. 
* gnu/packages/databases.scm (tdb): Update to 1.3.18.
[native-inputs]: Add WHICH.  Change PYTHON-2 to PYTHON.
 2019-03-02 22:21:15 +01:00
Tobias Geerinckx-Rice
4915894759
gnu: lmdb: Update to 0.9.23. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.23.
 2019-02-27 15:48:53 +01:00
Tobias Geerinckx-Rice
f167b432bb
gnu: lmdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (lmdb)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[arguments]: Adjust source directory name.
 2019-02-27 15:48:53 +01:00
Tobias Geerinckx-Rice
d84a20fb6b
gnu: memcached: Update to 1.5.12. 
* gnu/packages/databases.scm (memcached): Update to 1.5.12.
 2019-02-19 09:54:34 +01:00
Tobias Geerinckx-Rice
4cb2f29e3e
gnu: python-pymysql: Update to 0.9.3. 
* gnu/packages/databases.scm (python-pymysql): Update to 0.9.3.
 2019-02-19 09:53:41 +01:00
Tobias Geerinckx-Rice
2fc569a0fc
gnu: perl-db-file: Update to 1.843. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.843.
 2019-02-19 09:53:41 +01:00
Marius Bakke
61506fe551
gnu: Remove unneeded uses of python{,2}-minimal. 
The "python-minimal" package exists mostly to resolve a dependency cycle.  To
reduce duplication, packages should prefer the regular Python variants.

* gnu/packages/admin.scm (htop)[native-inputs]: Change PYTHON-MINIMAL-WRAPPER
to PYTHON-WRAPPER.
* gnu/packages/crypto.scm (botan)[native-inputs]: Likewise.
* gnu/packages/bioinformatics.scm (sambamba)[native-inputs]: Change
PYTHON-MINIMAL to PYTHON.
* gnu/packages/dictionaries.scm (apertium)[native-inputs]: Likewise.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Change PYTHON2-MINIMAL
to PYTHON2.
* gnu/packages/games.scm (openttd-opensfx, openttd-openmsx)[native-inputs]:
Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
 2019-02-17 18:44:18 +01:00
Leo Famulari
42ce9187fb
gnu: PostgreSQL 9.6: Update to 9.6.12. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.12.
 2019-02-14 14:46:32 -05:00
Leo Famulari
2950d33c6c
gnu: PostgreSQL: Update to 10.7. 
* gnu/packages/databases.scm (postgresql): Update to 10.7.
 2019-02-14 14:46:28 -05:00
Tobias Geerinckx-Rice
da93d42413
gnu: perl-dbi: Update to 1.642. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.642.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice
245e7a68e7
gnu: kyotocabinet: Update to 1.2.77. 
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.77.
 2019-02-12 17:38:21 +01:00
Marius Bakke
69fb26d4f5
gnu: mariadb: Add comments about failing tests. 
* gnu/packages/databases.scm (mariadb): Add comments.
 2019-02-06 23:30:34 +01:00
Marius Bakke
0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Ricardo Wurmus
aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI. 
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
 2019-01-25 23:18:55 +01:00
Carl Dong
38f77be464
gnu: mariadb: Disable sporadically failing tests. 
* guix/packages/databases.scm: Disable sporadically failing tests.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2019-01-22 21:42:52 -06:00
Ludovic Courtès
3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Ricardo Wurmus
255d1bbe77
gnu: Move dbm databases to new module. 
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus
cd0322a3ef
gnu: Move sqlite to separate module. 
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus
44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Efraim Flashner
0e28967250
Merge remote-tracking branch 'origin/master' into staging 2019-01-09 10:52:41 +02:00
Ricardo Wurmus
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Efraim Flashner
c007e35d24
gnu: recutils: Update to 1.8. 
* gnu/packages/databases.scm (recutils): Update to 1.8.
[source]: Remove snippet.
[arguments]: Remove custom 'set-bash4.4-header-location phase. Enable
parallel tests.
[inputs]: Move check ...
[native-inputs]: ... to here. Add pkg-config.
 2019-01-06 15:42:06 +02:00
Marius Bakke
f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Alex Vong
38abef124b
gnu: sqlite: Replace with 3.26.0 [security fixes]. 
Fixes <https://bugs.gnu.org/33751>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/databases.scm (sqlite-3.26.0): New public variable.
(sqlite)[replacement]: Use it.
(sqlite-with-fts5): Use 'package/inherit'.
(sqlite-with-column-metadata): Likewise.

Modified-by: Mark H Weaver <mhw@netris.org>
 2018-12-18 20:20:16 -05:00
Marius Bakke
fbb7b04a85
Merge branch 'master' into staging 2018-12-09 00:18:32 +01:00
Christopher Baines
fe5969656a
gnu: mongo-tools: Fix build. 
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
 2018-12-04 20:27:04 +00:00
Marius Bakke
99f63f011d
Merge branch 'master' into staging 2018-12-03 19:15:17 +01:00
Marius Bakke
25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Brett Gilio
682c291899
gnu: sqlcipher: Update to 3.4.2. 
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-24 22:40:46 +01:00
Marius Bakke
52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes]. 
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251.  See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
 2018-11-24 02:03:12 +01:00
Mark H Weaver
96272e2822
gnu: databases: Return #t from all phases. 
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
 2018-11-14 23:44:16 -05:00
Marius Bakke
79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari
ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql): Update to 10.6.
 2018-11-11 14:10:03 -05:00
Efraim Flashner
22d04ceda0
gnu: python-rq: Update to 0.12.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
 2018-11-11 11:54:28 +02:00
Efraim Flashner
c92d056a8b
gnu: python-alembic: Update to 1.0.2. 
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update
to 1.0.2.
 2018-11-11 11:13:53 +02:00
Ricardo Wurmus
f1f1cebdd3
gnu: mdbtools: Fetch sources from git. 
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
 2018-11-11 10:09:54 +01:00