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Author SHA1 Message Date
Ricardo Wurmus
eb8971b742
gnu: r-limma: Update to 3.34.9. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus
22d96920d3
gnu: r-edger: Update to 3.20.9. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus
99e4b11d81
gnu: r-shortread: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus
b180893289
gnu: r-dexseq: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
 2018-03-01 21:28:52 +01:00
Efraim Flashner
360ea2bbd5
gnu: efl: Use separate "include" output. 
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
 2018-03-01 22:19:37 +02:00
Efraim Flashner
40a7997e63
gnu: efl: Update to 1.20.7. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
 2018-03-01 22:18:58 +02:00
Ricardo Wurmus
643817e445
gnu: Add patchmatrix. 
* gnu/packages/music.scm (patchmatrix): New variable.
 2018-03-01 21:12:59 +01:00
Ricardo Wurmus
1debc5b9d2
gnu: ghc-uuid: Fix build. 
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
 2018-03-01 21:11:43 +01:00
Christopher Lemmer Webber
04e7b1e7f9
gnu: golly: Fix source url. 
* gnu/packages/games.scm (golly): Fix source url.
 2018-03-01 11:19:56 -06:00
Marius Bakke
52fb59ef25
gnu: imagemagick: Update to 6.9.9-36. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
 2018-03-01 17:40:49 +01:00
Marius Bakke
fe29681717
gnu: libe-book: Update to 0.1.3. 
* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
 2018-03-01 17:40:49 +01:00
Marius Bakke
814bc35d55
gnu: libabw: Update to 0.1.2. 
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
 2018-03-01 17:40:48 +01:00
Marius Bakke
c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4. 
* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
 2018-03-01 17:40:48 +01:00
Marius Bakke
9ed31fca81
gnu: libmspub: Update to 0.1.4. 
* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
 2018-03-01 17:40:48 +01:00
Marius Bakke
789445a10a
gnu: xorgproto: Update to 2018.4. 
* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
 2018-03-01 17:40:48 +01:00
Ludovic Courtès
21b5fc253e
gnu: cuirass: Update to aa4c778. 
* gnu/packages/ci.scm (cuirass): Update to aa4c778.
 2018-03-01 17:38:55 +01:00
Rene
35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2. 
* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-01 14:00:21 +01:00
Leo Famulari
acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5 
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.

Fixes <https://bugs.gnu.org/30662>.

* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
 2018-02-28 23:43:23 -05:00
Ricardo Wurmus
2adfe819f0
gnu: Remove duplicate definition of emacs-esxml. 
* gnu/packages/emacs.scm (emacs-esxml): Remove.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
c1d2236569
gnu: Remove emacs-nov. 
The package already exists with the name "emacs-nov-el".

* gnu/packages/emacs.scm (emacs-nov): Remove.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke. 
* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke. 
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
1b6bc51675
gnu: java-lz4: Use invoke. 
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
ec32bc9860
gnu: antlr3-3.1: Remove version from package name. 
* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
13f38d31a4
gnu: antlr3-3.1: Use invoke. 
* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
e85c1bf6cd
gnu: java-jansi-native: Simplify. 
* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
3d6925ef51
gnu: java-jansi-native: Fix description. 
* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
 2018-02-28 23:05:06 +01:00
Ricardo Wurmus
6338ea9a88
gnu: java-hawtjni: Simplify build phases. 
* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
080d0b605a
gnu: java-commons-jexl-2: Use invoke. 
* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-". 
* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819. 
* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
8333c206a9
gnu: java-jnacl: Simplify build phase. 
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
e158642816
gnu: java-jnacl: Correct license. 
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
602f54f436
gnu: java-jnacl: Use invoke. 
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
f201b18ed7
gnu: Add java-ecj-3.5. 
* gnu/packages/java.scm (java-ecj-3.5): New variable.
 2018-02-28 23:05:05 +01:00
Ricardo Wurmus
c1cb857645
gnu: Add java-ecj-3. 
* gnu/packages/java.scm (java-ecj-3): New variable.
 2018-02-28 23:05:05 +01:00
Tobias Geerinckx-Rice
9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice
4321aeb6d3
gnu: html-xml-utils: Update to 7.6. 
* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice
0828bd82bd
gnu: libftdi: Update to 1.4. 
* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice
30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2. 
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
 2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice
aa08ab38cd
gnu: dropbear: Update to 2018.76. 
* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
 2018-02-28 22:58:23 +01:00
Konrad Hinsen
649eb8b567
gnu: Add sala. 
* gnu/packages/password-utils.scm (sala): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-28 22:47:48 +01:00
Ludovic Courtès
4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper. 
* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
 2018-02-28 22:47:48 +01:00
Ludovic Courtès
63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal. 
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB.  Now
the closure size is down to 45.7 MiB.

Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html>.

* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
 2018-02-28 22:47:48 +01:00
Efraim Flashner
bcc6551083
gnu: ccl: Patch absolute file-name. 
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
 2018-02-28 22:11:21 +02:00
Efraim Flashner
da1b30bd93
gnu: keepassxc: Enable various plugins. 
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
configure-flags to enable favicons, browser integration and ssh-agent.
[inputs]: Add curl, libsodium.
 2018-02-28 22:11:21 +02:00
Efraim Flashner
3374dcc78c
gnu: keepassxc: Update to 2.3.0. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.0.
 2018-02-28 22:11:17 +02:00
Marius Bakke
53453d7acc
gnu: wavpack: Fix CVE-2018-6767. 
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
 2018-02-28 20:29:46 +01:00
Marius Bakke
6b3ee23b7a
gnu: ldb: Update to 1.3.2. 
* gnu/packages/samba.scm (ldb): Update to 1.3.2.
 2018-02-28 20:17:31 +01:00
Marius Bakke
954b677195
gnu: p11-kit: Update to 0.23.10. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.10.
 2018-02-28 20:13:41 +01:00