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Author SHA1 Message Date
Tobias Geerinckx-Rice
63bbf38fb1
gnu: expat: Update replacement to 2.2.4 [security fixes]. 
See 'Changes' in the source distribution for more information about the
fixed security issues.

* gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4.
(expat-2.2.2): Replace with...
(expat-2.2.4): ...new variable.
 2017-10-25 19:06:37 +02:00
Tobias Geerinckx-Rice
c61cac6902
gnu: tor: Update to 0.3.1.8. 
* gnu/packages/tor.scm (tor): Update to 0.3.1.8.
 2017-10-25 18:13:09 +02:00
Tobias Geerinckx-Rice
65808ba4ec
gnu: sssd: Add missing word to description. 
* gnu/packages/sssd.scm (sssd)[description]: Fix typo.
 2017-10-25 18:13:08 +02:00
Tobias Geerinckx-Rice
06c1304652
gnu: sssd: Update to 1.16.0. 
* gnu/packages/sssd.scm (sssd): Update to 1.16.0.
 2017-10-25 18:13:08 +02:00
Tobias Geerinckx-Rice
3d96f2320a
gnu: ding-libs: Update to 0.6.1. 
* gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.
 2017-10-25 18:13:08 +02:00
Efraim Flashner
a6e67d867c
gnu: r-ff: Remove aarch64-linux from supported-systems. 
* gnu/packages/cran.scm (r-ff)[supported-systems]: New field.
 2017-10-25 19:07:11 +03:00
Efraim Flashner
dda785f660
gnu: go@1.4: Limit supported systems. 
* gnu/packages/golang.scm (go@1.4)[supported-systems]: New field,
Limit supported systems to x86_64-linux, i686-linux and armhf-linux.
(go@1.9)[supported-systems]: New field.
 2017-10-25 19:07:10 +03:00
Ricardo Wurmus
c633b911ce
gnu: perl-moox-file-configdir: Fix source URL. 
* gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source
URL.
 2017-10-25 16:40:09 +02:00
Kyle Meyer
4c77abc4da
gnu: Add r-forcats. 
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 16:24:03 +02:00
Ricardo Wurmus
6a23c8b183
gnu: Add sqlite-with-fts3. 
* gnu/packages/databases.scm (sqlite-with-fts3): New variable.

Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
 2017-10-25 15:13:38 +02:00
Pierre Langlois
de98f4ed55
gnu: Add crypto++. 
* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:13 +02:00
Pierre Langlois
60b7ed9cb8
gnu: Add libechonest. 
* gnu/packages/music.scm (libechonest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:13 +02:00
Pierre Langlois
412d00728e
gnu: Add qjson. 
* gnu/packages/web.scm (qjson): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:09 +02:00
Petter
15b0844257
gnu: Add parcimonie. 
* gnu/packages/gnupg.scm (parcimonie): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter
985c41458d
gnu: Add perl-browser-open. 
* gnu/packages/perl.scm (perl-browser-open): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter
65f7f60693
gnu: Add perl-b-keywords. 
* gnu/packages/perl.scm (perl-b-keywords): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter
2a013d0f09
gnu: Add perl-carp-always. 
* gnu/packages/perl.scm (perl-carp-always): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter
fc4083c54f
gnu: Add perl-net-dbus-glib. 
* gnu/packages/glib.scm (perl-net-dbus-glib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter
a372c4da2f
gnu: Add perl-net-dbus. 
* gnu/packages/glib.scm (perl-net-dbus): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:37 +02:00
Eric Bavier
24404eaf93
gnu: dealii: Update to 8.5.1. 
Fixes compilation with boost@1.64.0.

* gnu/packages/maths.scm (dealii): Update to 8.5.1.
 2017-10-24 20:16:50 -05:00
Eric Bavier
4150da630f
gnu: p4est: Update to 2.0. 
* gnu/packages/maths.scm (p4est): Update to 2.0.
 2017-10-24 20:16:50 -05:00
Eric Bavier
9ce587f231
gnu: libhilbert: Remove package. 
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.

* gnu/packages/maths.scm (libhilbert): Remove variable.
 2017-10-24 20:16:49 -05:00
Eric Bavier
958b5a1caa
gnu: slepc: Update to 3.8.0. 
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
 2017-10-24 20:16:49 -05:00
Eric Bavier
6fec298d3e
gnu: petsc: Update to 3.8.0. 
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
 2017-10-24 20:16:42 -05:00
Ben Woodcroft
6f141eff47
gnu: bwa: Update to 0.7.17. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
 2017-10-25 09:29:22 +10:00
Ben Woodcroft
ae6e00f6f9
gnu: bwa: Change source URL to GitHub. 
* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.
 2017-10-25 09:29:22 +10:00
Petter
85c991b029
gnu: Add perl-moox-options. 
* gnu/packages/perl.scm (perl-moox-options): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:25 +02:00
Ricardo Wurmus
68998abd4f
gnu: perl-getopt-long-descriptive: Update to 0.100. 
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.
 2017-10-24 23:30:24 +02:00
Petter
b936ddf312
gnu: Add perl-moox-configfromfile. 
* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Petter
8df39f572c
gnu: Add perl-moox-file-configdir. 
* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Petter
658a4976fa
gnu: Add perl-moox-cmd. 
* gnu/packages/perl.scm (perl-moox-cmd): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Ricardo Wurmus
b547ef1d09
gnu: perl-list-moreutils: Update to 0.426. 
* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.
 2017-10-24 23:30:24 +02:00
Ricardo Wurmus
189bfb1112
gnu: Add perl-list-moreutils-xs. 
* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
 2017-10-24 23:30:24 +02:00
Petter
544dc8d46b
gnu: Add perl-libintl-perl. 
* gnu/packages/perl.scm (perl-libintl-perl): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter
180411e3f4
gnu: Add perl-file-configdir. 
* gnu/packages/perl.scm (perl-file-configdir): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter
987232e67d
gnu: Add perl-data-record. 
* gnu/packages/perl.scm (perl-data-record): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter
8dca3bde0e
gnu: Add perl-data-printer. 
* gnu/packages/perl.scm (perl-data-printer): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter
857d75388b
gnu: Add perl-clone-pp. 
* gnu/packages/perl.scm (perl-clone-pp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter
0de1e5e557
gnu: Add perl-data. 
* gnu/packages/perl.scm (perl-data): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
ng0
6bf249211d
gnu: gnurl: Update to 7.56.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-10-24 17:19:15 -04:00
Efraim Flashner
648c896ad3
gnu: screen: Update to 4.6.2. 
* gnu/packages/screen.scm (screen): Update to 4.6.2.
 2017-10-24 21:26:19 +03:00
Leo Famulari
ae7e24c421
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}. 
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2017-10-24 13:44:34 -04:00
Leo Famulari
6dcc8239be
gnu: icu4c: Fix CVE-2017-14952. 
* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.
 2017-10-24 13:10:35 -04:00
Leo Famulari
c330c27f7f
gnu: syncthing: Split into two outputs. 
* gnu/packages/syncthing.scm (syncthing)[outputs]: New field.
[arguments]: Change the 'install' and 'install-docs' phases to install to the
two outputs.
 2017-10-24 13:10:35 -04:00
Leo Famulari
1899ef0b83
gnu: syncthing: Use install-source? to disable installing the source code. 
* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f
instead of deleting the install-source phase.
 2017-10-24 13:10:35 -04:00
Petter
22473f6964
gnu: Add perl-types-path-tiny. 
* gnu/packages/perl.scm (perl-types-path-tiny): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:32 +02:00
Petter
35aaf4b1bd
gnu: Add perl-type-tiny-xs. 
* gnu/packages/perl.scm (perl-type-tiny-xs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:32 +02:00
Petter
237edb6d1f
gnu: Add perl-test-taint. 
* gnu/packages/perl.scm (perl-test-taint): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:32 +02:00
Petter
cb2f48e7f2
gnu: Add perl-term-size-any. 
* gnu/packages/perl.scm (perl-term-size-any): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:32 +02:00
Petter
fcbc997e03
gnu: Add perl-term-size-perl. 
* gnu/packages/perl.scm (perl-term-size-perl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:32 +02:00
Petter
a1798ee3c7
gnu: Add perl-devel-hide. 
* gnu/packages/perl.scm (perl-devel-hide): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:31 +02:00
Petter
8ae0558aad
gnu: Add perl-sort-naturally. 
* gnu/packages/perl.scm (perl-sort-naturally): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:31 +02:00
Petter
b6cd89084d
gnu: Add perl-proc-invokeeditor. 
* gnu/packages/perl.scm (perl-proc-invokeeditor): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:31 +02:00
Petter
b44ecca691
gnu: Add perl-archive-extract. 
* gnu/packages/compression.scm (perl-archive-extract): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 18:38:31 +02:00
Ricardo Wurmus
5aeb661134
gnu: Add perl-gnupg-interface. 
* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable.

Co-authored-by: Petter <petter@mykolab.ch>
 2017-10-24 18:38:31 +02:00
Leo Famulari
6ee4fd2ae1
gnu: borg: Split up the monolithic man page. 
* gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs'
phase to install one man page per Borg sub-command.
 2017-10-24 10:21:51 -04:00
Leo Famulari
db4411b42b
gnu: python-docutils: Update to 0.14. 
* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
 2017-10-24 10:21:51 -04:00
Petter
85f225fbf7
gnu: Add perl-xml-twig. 
* gnu/packages/xml.scm (perl-xml-twig): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 10:40:49 +02:00
Marius Bakke
91f2daa58d
gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257]. 
* gnu/packages/curl.scm (curl-7.56.0): Rename to ...
(curl-7.56.1): ... this.  Update to 7.56.1.
(curl)[replacement]: Adjust accordingly.
 2017-10-24 08:09:47 +02:00
Danny Milosavljevic
fc9a93cbf9
gnu: claws-mail: Re-enable vcalendar. 
* gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar).
[inputs]: Add libical.
 2017-10-24 08:07:24 +02:00
Marius Bakke
62d48234e2
gnu: git: Update to 2.14.3. 
* gnu/packages/version-control.scm (git): Update to 2.14.3.
 2017-10-24 07:55:34 +02:00
Ricardo Wurmus
306556528e
gnu: Add sorcer. 
* gnu/packages/music.scm (sorcer): New variable.
 2017-10-24 07:54:43 +02:00
Ricardo Wurmus
2809a355b6
gnu: Add papagayo. 
* gnu/packages/animation.scm (papagayo): New variable.
 2017-10-24 07:54:43 +02:00
Petter
7a04dddd26
gnu: Add perl-html-tidy. 
* gnu/packages/web.scm (perl-html-tidy): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:06:21 +02:00
Petter
0a9bdd9583
gnu: Add tidyp. 
* gnu/packages/web.scm (tidyp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:06:20 +02:00
Petter
efc8f7d03d
gnu: Add perl-lwp-online. 
* gnu/packages/web.scm (perl-lwp-online): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:05:28 +02:00
Petter
9e88b210f6
gnu: Add perl-xml-handler-yawriter. 
* gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:04:15 +02:00
Petter
33b592eed3
gnu: Add perl-xml-sax-writer. 
* gnu/packages/xml.scm (perl-xml-sax-writer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:04:15 +02:00
Petter
b7c5919514
gnu: Add perl-xml-filter-buffertext. 
* gnu/packages/xml.scm (perl-xml-filter-buffertext): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:04:14 +02:00
Petter
9e1c358139
gnu: Add perl-tree-xpathengine. 
* gnu/packages/xml.scm (perl-tree-xpathengine): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:04:14 +02:00
Petter
3b6958021d
gnu: Add perl-xml-xpathengine. 
* gnu/packages/xml.scm (perl-xml-xpathengine): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 00:04:14 +02:00
Julien Lepiller
6768e0a7a5
gnu: Add java-jboss-javassist. 
* gnu/packages/java.scm (java-jboss-javassist): New variable.
 2017-10-23 22:55:29 +02:00
Julien Lepiller
b12fe1e517
gnu: Add java-assertj. 
* gnu/packages/java.scm (java-assertj): New variable.
 2017-10-23 22:55:25 +02:00
Julien Lepiller
ec4e8ad724
gnu: Add java-guice-servlet. 
* gnu/packages/java.scm (java-guice-servlet): New variable.
 2017-10-23 22:55:21 +02:00
Julien Lepiller
5766984b06
gnu: Add java-guice. 
* gnu/packages/java.scm (java-guice): New variable.
 2017-10-23 22:55:18 +02:00
Julien Lepiller
454536e0ce
gnu: Add java-javax-inject. 
* gnu/packages/java.scm (java-javax-inject): New variable.
 2017-10-23 22:55:14 +02:00
Julien Lepiller
5d104a2756
gnu: Add java-aopalliance. 
* gnu/packages/java.scm (java-aopalliance): New variable.
 2017-10-23 22:55:12 +02:00
Julien Lepiller
213bb98180
gnu: Add java-eclipse-jetty-servlet-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-servlet-9.2): New variable.
 2017-10-23 22:55:09 +02:00
Julien Lepiller
fb680f88e9
gnu: Add java-eclipse-jetty-servlet. 
* gnu/packages/web.scm (java-eclipse-jetty-servlet): New variable.
 2017-10-23 22:55:07 +02:00
Julien Lepiller
fa2a23a146
gnu: Add java-eclipse-jetty-security-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2): New variable.
 2017-10-23 22:55:04 +02:00
Julien Lepiller
8528e20dff
gnu: Add java-eclipse-jetty-security. 
* gnu/packages/web.scm (java-eclipse-jetty-security): New variable.
 2017-10-23 22:55:02 +02:00
Julien Lepiller
e36e2bee46
gnu: Add java-eclipse-jetty-server-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-server-9.2): New variable.
 2017-10-23 22:54:58 +02:00
Julien Lepiller
5d38f7e4e8
gnu: Add java-eclipse-jetty-server. 
* gnu/packages/web.scm (java-eclipse-jetty-server): New variable.
 2017-10-23 22:54:56 +02:00
Julien Lepiller
812c712f7a
gnu: Add java-eclipse-jetty-jmx-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-jmx-9.2): New variable.
 2017-10-23 22:54:52 +02:00
Julien Lepiller
4b172061e5
gnu: Add java-eclipse-jetty-jmx. 
* gnu/packages/web.scm (java-eclipse-jetty-jmx): New variable.
 2017-10-23 22:54:49 +02:00
Julien Lepiller
821869fcf4
gnu: Add java-eclipse-jetty-http-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-http-9.2): New variable.
 2017-10-23 22:54:47 +02:00
Julien Lepiller
4a1376d3fd
gnu: Add java-eclipse-jetty-http. 
* gnu/packages/web.scm (java-eclipse-jetty-http): New variable.
 2017-10-23 22:54:45 +02:00
Julien Lepiller
b90012fddf
gnu: Add java-eclipse-jetty-io-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-io-9.2): New variable.
 2017-10-23 22:54:42 +02:00
Julien Lepiller
b510b7f58f
gnu: Add java-eclipse-jetty-io. 
* gnu/packages/web.scm (java-eclipse-jetty-io): New variable.
 2017-10-23 22:54:40 +02:00
Julien Lepiller
5010671d4d
gnu: Add java-eclipse-jetty-util-9.2. 
* gnu/packages/web.scm (java-eclipse-jetty-util-9.2): New variable.
 2017-10-23 22:54:38 +02:00
Julien Lepiller
1657d62ae5
gnu: Add java-eclipse-jetty-util. 
* gnu/packages/web.scm (java-eclipse-jetty-util): New variable.
 2017-10-23 22:54:35 +02:00
Julien Lepiller
1f985e4497
gnu: Add java-eclipse-jetty-perf-helper. 
* gnu/packages/web.scm (java-eclipse-jetty-perf-helper): New variable.
 2017-10-23 22:54:33 +02:00
Julien Lepiller
339bef37cd
gnu: Add java-eclipse-jetty-test-helper. 
* gnu/packages/web.scm (java-eclipse-jetty-test-helper): New variable.
 2017-10-23 22:54:30 +02:00
Julien Lepiller
91072287a6
gnu: Add java-tomcat. 
* gnu/packages/web.scm (java-tomcat): New variable.
 2017-10-23 22:54:27 +02:00
Julien Lepiller
90a127c7ed
gnu: Add java-hdrhistogram. 
* gnu/packages/web.scm (java-hdrhistogram): New variable.
 2017-10-23 22:54:12 +02:00
Danny Milosavljevic
1a6497dee4
gnu: Add python2-libmpsse. 
* gnu/packages/embedded.scm: Add imports.
(python2-libmpsse): New variable.
 2017-10-23 19:11:19 +02:00
Tobias Geerinckx-Rice
cc14a90fd3
gnu: borg: Update to 1.1.1. 
* gnu/packages/backup.scm (borg): Update to 1.1.1.
 2017-10-23 14:49:32 +02:00
Tobias Geerinckx-Rice
57af0d13b2
gnu: python-lmdb: Update to 0.93. 
* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
 2017-10-23 14:49:32 +02:00
Tobias Geerinckx-Rice
afd845368a
gnu: python-peewee: Update to 2.10.2. 
* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
 2017-10-23 14:49:31 +02:00
Tobias Geerinckx-Rice
6a4ad78dd6
gnu: python-graphviz: Update to 0.8.1. 
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.1.
 2017-10-23 14:49:31 +02:00
Tobias Geerinckx-Rice
2b1b27990b
gnu: python-graphene: Disable tests. 
* gnu/packages/python.scm (python-graphene)[native-inputs]: Remove.
[arguments]: Disable #:tests.
 2017-10-23 14:49:30 +02:00
Tobias Geerinckx-Rice
f737d9f2fb
gnu: python-pytest-django: Use python-pytest@3. 
* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]: Replace
python-pytest with python-pytest-3.0.
 2017-10-23 14:49:30 +02:00
Tobias Geerinckx-Rice
ce4dfde0d8
gnu: miso: Update to 0.5.4. 
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4.
 2017-10-23 14:49:29 +02:00
Efraim Flashner
1ee3079d78
gnu: cowsay: Run tests after install. 
* gnu/packages/games.scm (cowsay)[arguments]: Delete 'check phase, add
custom 'check phase after install.
 2017-10-23 11:44:17 +03:00
Efraim Flashner
3bf94bc8bc
gnu: criu: Add missing perl input. 
* gnu/packages/virtualization.scm (criu)[native-inputs]: Add perl.
 2017-10-23 09:50:33 +03:00
Ricardo Wurmus
fe420383e1
gnu: Add criu. 
* gnu/packages/virtualization.scm (criu): New variable.
 2017-10-23 08:09:05 +02:00
Ricardo Wurmus
de5308f526
gnu: Add libnet. 
* gnu/packages/networking.scm (libnet): New variable.
 2017-10-23 08:09:05 +02:00
Mark H Weaver
2f05dd6b4c
gnu: linux-libre: Update to 4.13.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.9.
(%linux-libre-hash): Update hash.
 2017-10-23 00:53:38 -04:00
Mark H Weaver
1b635cafac
gnu: linux-libre@4.9: Update to 4.9.58. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.58.
 2017-10-23 00:53:03 -04:00
Mark H Weaver
8e4a976c68
gnu: linux-libre@4.4: Update to 4.4.94. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.94.
 2017-10-23 00:52:28 -04:00
Mark H Weaver
bb234ed825
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2017-10-23 00:51:34 -04:00
Ludovic Courtès
fc938a2775
gnu: lxqt-common: Remove. 
This package is marked as deprecated upstream.
Fixes <https://bugs.gnu.org/28823>.

* gnu/packages/lxqt.scm (lxqt-common): Remove.
 2017-10-22 16:05:26 -07:00
Ludovic Courtès
ed9b09e4f0
gnu: impressive: Fix Python 2/3 dependency mismatch. 
* gnu/packages/pdf.scm (impressive)[inputs]: Depend on PYTHON2-PYGAME.
 2017-10-22 15:32:19 -07:00
rsiddharth
3a784700cd
gnu: Add ghc-aws. 
* gnu/packages/haskell.scm (ghc-aws): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:19 -07:00
rsiddharth
95fb25bf59
gnu: Add ghc-conduit-combinators. 
* gnu/packages/haskell.scm (ghc-condui-combinators): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
463c39c339
gnu: ghc-conduit: Fix lint error. 
* gnu/packages/haskell.scm (ghc-conduit)[description]: Fix lint error.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
7bc18f412b
gnu: ghc-conduit: Update to 1.2.12.1. 
* gnu/packages/haskell.scm (ghc-conduit): Update to 1.2.12.1.
[native-inputs]: Add "ghc-split".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
ed4cc0c5e9
gnu: Add ghc-mono-traversable. 
* gnu/packages/haskell.scm (ghc-mono-traversable): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
f6094850d0
gnu: Add ghc-foldl. 
* gnu/packages/haskell.scm (ghc-foldl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
1896a2526d
gnu: Add ghc-vector-builder. 
* gnu/packages/haskell.scm (ghc-vector-builder): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
33109c822a
gnu: Add ghc-rebase. 
* gnu/packages/haskell.scm (ghc-rebase): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:18 -07:00
rsiddharth
24535a3d00
gnu: Add ghc-uuid. 
* gnu/packages/haskell.scm (ghc-uuid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
b999b0092e
gnu: Add ghc-uuid-types. 
* gnu/packages/haskell.scm (ghc-uuid-types): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
6eda263586
gnu: Add ghc-network-info. 
* gnu/packages/haskell.scm (ghc-network-info): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
0119f17f5d
gnu: Add ghc-cryptohash-sha1. 
* gnu/packages/haskell.scm (ghc-cryptohash-sha1): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
caac21006d
gnu: Add ghc-cryptohash-md5. 
* gnu/packages/haskell.scm (ghc-cryptohash-md5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
8155778f52
gnu: Add ghc-puremd5 
* gnu/packages/haskell.scm (ghc-puremd5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
f78ed5d56f
gnu: Add ghc-pretty-hex. 
* gnu/packages/haskell.scm (ghc-pretty-hex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:17 -07:00
rsiddharth
83c79ea0f8
gnu: Add ghc-crypto-api-tests. 
* gnu/packages/haskell.scm (ghc-crypto-api-tests): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
e2f6116e78
gnu: Add ghc-crypto-api. 
* gnu/packages/haskell.scm (ghc-crypto-api): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
933e78045d
gnu: Add ghc-entropy. 
* gnu/packages/haskell.scm (ghc-entropy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
16d4125e90
gnu: Add ghc-either. 
* gnu/packages/haskell.scm (ghc-either): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
87129984ca
gnu: Add ghc-monadrandom. 
* gnu/packages/haskell.scm (ghc-monadrandom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
4562c8c894
gnu: Add ghc-contravariant-extras. 
* gnu/packages/haskell.scm (ghc-contravariant-extras): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
e329bacb85
gnu: Add ghc-tuple-th. 
* gnu/packages/haskell.scm (ghc-tuple-th): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
ac4cb8fd7a
gnu: Add ghc-base-prelude. 
* gnu/packages/haskell.scm (ghc-base-prelude): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:16 -07:00
rsiddharth
371ad40c84
gnu: Add ghc-chunked-data. 
* gnu/packages/haskell.scm (ghc-chunked-data): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
0c7172848e
gnu: Add ghc-statistics. 
* gnu/packages/haskell.scm (ghc-statistics): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
8184b0f98c
gnu: ghc-base-orphans: Update to 0.6. 
* gnu/packages/haskell.scm (ghc-base-orphans): Update to 0.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
608bf276d7
gnu: Add ghc-monad-par. 
* gnu/packages/haskell.scm (ghc-monad-par): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
f978e2ac20
gnu: Add ghc-abstract-deque. 
* gnu/packages/haskell.scm (ghc-abstract-deque): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
59551881b1
gnu: Add ghc-monad-par-extras. 
* gnu/packages/haskell.scm (ghc-monad-par-extras): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
97b26920a8
gnu: Add ghc-abstract-par. 
* gnu/packages/haskell.scm (ghc-abstract-par): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:15 -07:00
rsiddharth
e0195ea875
gnu: Add ghc-test-framework-th. 
* gnu/packages/haskell.scm (ghc-test-framework-th): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
897d4f2820
gnu: Add ghc-language-haskell-extract. 
* gnu/packages/haskell.scm
(ghc-language-haskell-extract): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
30aede1b6f
gnu: Add ghc-vector-algorithms. 
* gnu/packages/haskell.scm (ghc-vector-algorithms): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
1a2a247bce
gnu: Add ghc-mwc-random. 
* gnu/packages/haskell.scm (ghc-mwc-random): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
a51ba89774
gnu: Add ghc-math-functions. 
* gnu/packages/haskell.scm (ghc-math-functions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
bdd7e3950f
gnu: Add ghc-erf. 
* gnu/packages/haskell.scm (ghc-erf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
c1274a0b79
gnu: Add ghc-vector-th-unbox. 
* gnu/packages/haskell.scm (ghc-vector-th-unbox): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:14 -07:00
rsiddharth
78d8b8f36a
gnu: Add ghc-errors. 
* gnu/packages/haskell.scm (ghc-errors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-22 15:32:13 -07:00
Marius Bakke
ef7dd2e259
gnu: python-chardet: Fix PyPi download location. 
This is a followup to a54cb3ce1f.

* gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
 2017-10-22 23:32:17 +02:00
Marius Bakke
60e29339d8
gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671. 
* gnu/packages/patches/glibc-CVE-2017-15670-15671.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc/fixed): New variable.
(glibc-2.24, glibc-2.23, glibc-2.22)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
 2017-10-22 23:13:09 +02:00
Ricardo Wurmus
65fc5bf07d
gnu: faust-2: Update to 2.1.0. 
* gnu/packages/audio.scm (faust-2): Update to 2.1.0.
[source]: Fetch sources via git.
[arguments]: Add phase "fix-permissions".
 2017-10-22 21:25:28 +02:00
Marius Bakke
25669275a1
gnu: irssi: Update to 1.0.5 [security fixes]. 
Fixes CVE-2017-15228, CVE-2017-15227, CVE-2017-15721, CVE-2017-15723 and
CVE-2017-15722.  See <https://irssi.org/security/irssi_sa_2017_10.txt>.

* gnu/packages/irc.scm (irssi): Update to 1.0.5.
 2017-10-22 17:24:33 +02:00
Cyril Roelandt
a54cb3ce1f
gnu: python-chardet: Update to 3.0.4. 
* gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
 2017-10-22 17:13:19 +02:00
Cyril Roelandt
69f7f04544
gnu: python2-hypothesis: fix propagated inputs. 
* gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add
  python2-enum34, which was incorrectly listed among the native inputs.
 2017-10-22 17:13:15 +02:00
Nicolas Goaziou
7f7fadb592
gnu: keepassxc: Update to 2.2.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.1.
 2017-10-22 16:55:36 +02:00
宋文武
b000294ef7
gnu: qt: Set 'EffectiveSourcePaths' to 'qtbase' for submodules. 
Fixes a regression introduced in 8075b62378.
This allows 'linguist.pro' of 'qttools' to find 'ConfigVersion.cmake.in',
which is needed for 'Qt5LinguistToolsConfigVersion.cmake'.

Reported by Thomas Danckaert <post@thomasdanckaert.be>.

* gnu/packages/qt.scm (qtsvg)[arguments]: Set 'EffectiveSourcePaths' in
the 'configure-qmake' phase.
 2017-10-22 19:37:35 +08:00
Marius Bakke
3e8daecfd8
gnu: vim: Update to 8.0.1207. 
* gnu/packages/vim.scm (vim): Update to 8.0.1207.
 2017-10-22 13:22:59 +02:00
Marius Bakke
d436c6b566
gnu: rottlog: Remove hard-coded '/usr/sbin/sendmail' reference. 
* gnu/packages/admin.scm (rottlog)[arguments]: Add 'patch-paths' phase.
 2017-10-22 13:22:59 +02:00
Marius Bakke
58f0a19c58
gnu: sddm: Fix FTBFS after Qt paths change. 
* gnu/packages/display-managers.scm (sddm)[arguments]: Add 'fix-qml-include'
phase.
 2017-10-22 13:22:59 +02:00
Ricardo Wurmus
03639d0354
gnu: Add python-editdistance. 
* gnu/packages/textutils.scm (python-editdistance): New variable.
 2017-10-22 13:19:58 +02:00
Hartmut Goebel
12a9f7be54
gnu: kservice: Fix comment (number of failing tests). 
* gnu/packages/kde-frameweorks.scm(kservice): Fix comment.
 2017-10-22 12:58:42 +02:00
Ricardo Wurmus
a00403c61c
gnu: suil: Update to 0.10.0. 
* gnu/packages/audio.scm (suil): Update to 0.10.0.
[inputs]: Add gtk+.
[description]: Remove version numbers from supported toolkits.
 2017-10-22 12:13:37 +02:00
Ricardo Wurmus
197484147a
gnu: ingen: Update to 0.0.0-2.cc4a4db33. 
* gnu/packages/music.scm (ingen): Update to 0.0.0-2.cc4a4db33.
[inputs]: Replace lv2 with lv2-devel.
 2017-10-22 12:13:37 +02:00
Ricardo Wurmus
5e30032ffb
gnu: Add lv2-devel. 
* gnu/packages/audio.scm (lv2-devel): New variable.
 2017-10-22 12:13:37 +02:00
Ricardo Wurmus
ab8f4a7067
gnu: ganv-devel: Update to 1.5.4-12f7d6b04. 
* gnu/packages/gtk.scm (ganv-devel): Update to 1.5.4-12f7d6b04.
 2017-10-22 12:13:36 +02:00
Ricardo Wurmus
a8bf6b9b9b
gnu: raul-devel: Update to 0.8.9-4db870b2b. 
* gnu/packages/audio.scm (raul-devel): Update to 0.8.9-4db870b2b.
 2017-10-22 12:13:36 +02:00
Ricardo Wurmus
e206de67b6
gnu: Add r-rgraphviz. 
* gnu/packages/graph.scm (r-rgraphviz): New variable.
 2017-10-22 12:12:42 +02:00
Ricardo Wurmus
1ab867bebb
gnu: Add r-pdist. 
* gnu/packages/cran.scm (r-pdist): New variable.
 2017-10-22 12:10:33 +02:00
Julien Lepiller
6efc999678
gnu: Update coq-interval to 3.3.0. 
* gnu/packages/ocaml.scm (coq-interval): Update to 3.3.0.
[inputs]: Add coq-bignums.
 2017-10-22 10:21:25 +02:00
Julien Lepiller
dbfb1a596a
gnu: Add coq-bignums. 
* gnu/packages/ocaml.scm (coq-bignums): New variable.
 2017-10-22 10:21:22 +02:00
Julien Lepiller
3ffd180cc5
gnu: Update coq-coquelicot to 3.0.1. 
* gnu/packages/ocaml.scm (coq-coquelicot): Update to 3.0.1.
 2017-10-22 10:21:19 +02:00
Julien Lepiller
2e331c9c43
gnu: Update coq-mathcomp to 1.6.2. 
* gnu/packages/ocaml.scm (coq-mathcomp): Update to 1..6.2.
 2017-10-22 10:21:16 +02:00
Julien Lepiller
b44f13e04c
gnu: Update coq-flocq to 2.6.0. 
* gnu/packages/ocaml.scm (coq-flocq): Update to 2.6.0.
 2017-10-22 10:21:14 +02:00
Julien Lepiller
6e4da73710
gnu: Update coq to 8.7.0. 
* gnu/packages/ocaml.scm (coq): Update to 8.7.0.
[build-system]: Use ocaml-build-system.
[inputs]: Add python-2.
[arguments]: Disable two failing tests.
 2017-10-22 10:21:11 +02:00
Julien Lepiller
07b4cd3a48
gnu: camlp5: install META file. 
* gnu/packages/ocaml.scm (camlp5) [phases]: New install-meta phase.
 2017-10-22 10:20:50 +02:00
Marius Bakke
3d679ab1e5
gnu: lame: Update to 3.100. 
* gnu/packages/mp3.scm (lame): Update to 3.100.
[source]: Don't hard-code version.
 2017-10-22 00:39:26 +02:00
Marius Bakke
28d0b52164
gnu: python-pyqt: Update to 5.9. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.9.
 2017-10-21 22:38:55 +02:00
Marius Bakke
079e679219
gnu: python-sip: Update to 4.19.3. 
* gnu/packages/qt.scm (python-sip): Update to 4.19.3.
 2017-10-21 22:38:55 +02:00
Tobias Geerinckx-Rice
a4194d1684
gnu: rest: Update to 0.8.1. 
* gnu/packages/gnome.scm (rest): Update to 0.8.1.
 2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
4b9a65bf6e
gnu: gnome-disk-utility: Update to 3.26.1. 
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.1.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
 2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
b27991179e
gnu: perl-geo-ip: Update to 1.51. 
* gnu/packages/networking.scm (perl-geo-ip): Update to 1.51.
 2017-10-21 17:43:46 +02:00
Tobias Geerinckx-Rice
5713bbf157
Use HTTPS for bioconductor.org. 
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
 2017-10-21 17:43:40 +02:00
Kei Kebreau
82bdcfe821
gnu: schismtracker: Update to 20170910. 
* gnu/packages/music.scm (schismtracker): Update to 20170910.
 2017-10-21 09:44:28 -04:00
Maxim Cournoyer
fd75eb6cd4
gnu: Fix the hashes of mutated GitHub archives. 
Fixes <https://bugs.gnu.org/28745>.

* gnu/packages/audio.scm (csound): Fix hash.
* gnu/packages/engineering.scm (fritzing): Likewise.
* gnu/packages/erlang.scm (erlang): Likewise.
* gnu/packages/fonts.scm (font-google-material-design-icons): Likewise.
* gnu/packages/graphics.scm (ogre): Likewise.
* gnu/packages/java.scm (java-plexus-interpolation, antlr3): Likewise.
* gnu/packages/serialization.scm (yaml-cpp): Likewise.
* gnu/packages/version-control.scm (libgit2): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-20 22:55:51 +02:00
Leo Famulari
7827032a7c
gnu: libvirt: Fix CVE-2017-1000256. 
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
 2017-10-20 15:36:43 -04:00
Leo Famulari
48f8b07082
gnu: mysql: Update to 5.7.20. 
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
 2017-10-20 15:36:42 -04:00
Leo Famulari
3890df5800
gnu: webkitgtk: Update to 2.18.1. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.1.
 2017-10-20 15:36:39 -04:00
Tobias Geerinckx-Rice
a6e70e1169
gnu: youtube-dl: Update to 2017.10.20. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.20.
 2017-10-20 19:48:34 +02:00
Tobias Geerinckx-Rice
5a740d06b6
gnu: dovecot: Update to 2.2.33.2. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.33.2.
 2017-10-20 19:48:34 +02:00
Tobias Geerinckx-Rice
fa9ac83ec4
gnu: ola: Build with protobuf@2. 
This follows up commit dd12d4aad0.

* gnu/packages/protobuf.scm (protobuf-2): New variable.
* gnu/packages/lighting.scm (ola)[propagated-inputs]: Use it.
 2017-10-20 19:48:33 +02:00
Tobias Geerinckx-Rice
77aa706ab6
gnu: font-hack: Update to 3.000. 
* gnu/packages/fonts.scm (font-hack): Update to 3.000.
[source]: Download from new account.
[license]: Explicitly list all licences.
 2017-10-20 19:48:33 +02:00
Julien Lepiller
c812f46058
gnu: Add aegisub. 
* gnu/packages/video.scm (aegisub): New variable.
 2017-10-20 19:41:57 +02:00
Julien Lepiller
6779ae27e6
gnu: Add ffms2. 
* gnu/packages/video.scm (aegisub): New variable.
 2017-10-20 19:41:34 +02:00
Efraim Flashner
f71ce2824d
gnu: speexdsp: Fix building on aarch64-linux. 
* gnu/packages/xiph.scm (speexdsp)[arguments]: On aarch64-linux, disable
neon optimisations.
 2017-10-20 16:23:48 +03:00
Oleg Pykhalov
6df274073a
gnu: Add emacs-json-snatcher. 
* gnu/packages/emacs.scm (emacs-json-snatcher): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-20 14:41:41 +02:00
ng0
49d3d1d937
gnu: shellcheck: Update to 0.4.6. 
* gnu/packages/haskell.scm (shellcheck): Update to 0.4.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-20 14:41:41 +02:00
Tobias Geerinckx-Rice
3b2fa47879
gnu: dos2unix: Update to 7.4.0. 
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.0.
 2017-10-20 02:16:56 +02:00
Tobias Geerinckx-Rice
6c0c175271
gnu: cowsay: Swap ‘build’ and ‘install’ phases. 
* gnu/packages/games.scm (cowsay)[arguments]: Invoke ‘install.sh’ during the
‘install’ phase.  Delete the ‘build’ phase, as there's nothing to be built.
 2017-10-20 02:16:55 +02:00
Tobias Geerinckx-Rice
46ba5337c0
gnu: cowsay: Update to 3.04. 
* gnu/packages/games.scm (cowsay): Update to 3.04.
[source]: Download from new location.
[home-page]: Point directly to the relevant page.
[description]: Correct mark-up and expand slightly.
 2017-10-20 02:16:54 +02:00
Tobias Geerinckx-Rice
8cccd09d3e
gnu: colordiff: Use HTTPS home page. 
* gnu/packages/patchutils.scm (colordiff)[home-page]: Use HTTPS.
 2017-10-20 02:16:54 +02:00
Tobias Geerinckx-Rice
fc622383a7
gnu: unbound: Update to 1.6.7. 
* gnu/packages/dns.scm (unbound): Update to 1.6.7.
 2017-10-20 02:16:53 +02:00
Tobias Geerinckx-Rice
378140e591
gnu: neofetch: Update to 3.3.0. 
* gnu/packages/admin.scm (neofetch): Update to 3.3.0.
[arguments]: Add ‘install’ phase replacement that manually invokes make.
 2017-10-20 02:16:52 +02:00
Tobias Geerinckx-Rice
1e9433cf4d
gnu: qtox: Update to 1.12.1. 
* gnu/packages/messaging.scm (qtox): Update to 1.12.1.
 2017-10-20 02:16:52 +02:00
Tobias Geerinckx-Rice
57473bfc51
gnu: speedtest-cli: Update to 1.0.7. 
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.7.
 2017-10-20 02:16:51 +02:00
Tobias Geerinckx-Rice
47b85a69c0
gnu: cppcheck: Update to 1.81. 
* gnu/packages/check.scm (cppcheck): Update to 1.81.
 2017-10-20 02:16:51 +02:00
Kei Kebreau
7f65202990
gnu: python-sge-pygame: Update source URL. 
* gnu/packages/game-development.scm (python-sge-pygame)[source]: Update URL.
 2017-10-19 18:01:37 -04:00
Leo Famulari
9ccce79910
gnu: musl: Update to 1.1.17. 
* gnu/packages/musl.scm (musl): Update to 1.1.17.
[source]: Remove patch.
* gnu/packages/patches/musl-CVE-2016-8859.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-10-19 17:37:25 -04:00
Mark H Weaver
b11962067b
gnu: linux-libre: Update to 4.13.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.8.
(%linux-libre-hash): Update hash.
 2017-10-19 15:31:47 -04:00
Mark H Weaver
7a402621ec
gnu: linux-libre@4.9: Update to 4.9.57. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.57.
 2017-10-19 15:31:02 -04:00
Mark H Weaver
a7c3dfeb6c
gnu: linux-libre@4.4: Update to 4.4.93. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.93.
 2017-10-19 15:30:30 -04:00
Mark H Weaver
a8401c4ef1
gnu: linux-libre@4.1: Update to 4.1.45. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.45.
Remove patch that is now included upstream.
 2017-10-19 15:29:09 -04:00
Marius Bakke
8c1db4fc58
gnu: yadifa: Update to 2.2.6. 
* gnu/packages/dns.scm (yadifa): Update to 2.2.6.
 2017-10-19 21:21:01 +02:00
Marius Bakke
43dc47fa24
gnu: Add zathura-pdf-mupdf. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): New variable.
 2017-10-19 21:21:01 +02:00
Marius Bakke
513885b54e
gnu: qemu: Build with libjpeg-turbo. 
This gets rid of a compile warning since SPICE uses libjpeg-turbo, and reduces
the closure size by 0.8MiB.

* gnu/packages/virtualization.scm (qemu)[inputs]: Replace LIBJPEG-8 with
LIBJPEG-TURBO.
 2017-10-19 21:20:56 +02:00
Oleg Pykhalov
d1c11418e7
gnu: emacs: Fix Man default C header file search path. 
* gnu/packages/emacs.scm (emacs): Make sure Man looks for C header files in
  the right places.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:47 +02:00
宋文武
b79813a19a
gnu: speex: Build and install 'speexdec' and 'speexenc'. 
* gnu/packages/xiph.scm (speex)[native-inputs]: Add 'pkg-config'.
[inputs]: Add 'speexdsp'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:44 +02:00
Andy Patterson
4ad8fbd185
gnu: virt-manager: Fix default URI check. 
Allows virt-manager to connect to qemu://system by default.

* gnu/packages/virtualization.scm (virt-manager)[arguments]<#:phases>: Add
'fix-default-uri.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:44 +02:00
Andy Patterson
b764a9f5e0
gnu: virt-manager: Enable statistics graphing support. 
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add
python2-pycairo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:44 +02:00
Andy Patterson
9a187b39b7
gnu: qemu: Add OpenGL support. 
Enables virgl support with spice 0.13+.

* gnu/packages/virtualization.scm (qemu)[arguments]<#:configure-flags>: Add
--enable-opengl.
[inputs]: Add libdrm and libepoxy.
(qemu-minimal)[inputs]: Remove libdrm and libepoxy.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:44 +02:00
Andy Patterson
8da7f79281
gnu: virt-manager: Enable spice-gtk support. 
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add spice-gtk.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:43 +02:00
Andy Patterson
c44dd0d676
gnu: spice-gtk: Enable GObject introspection support. 
Allows virt-manager to use the spice-gtk widget.

* gnu/packages/spice.scm (spice-gtk)[inputs]: Add gobject-introspection.
[arguments]<#:configure-flags>: Add --enable-introspection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:43 +02:00
Andy Patterson
b376ec57f9
gnu: qemu: Enable spice usb redirection support. 
* gnu/packages/virtualization.scm (qemu)[arguments]<#:configure-flags>: New
argument.
[inputs]: Add usbredir.
(qemu-minimal)[arguments]<#:configure-flags>: Restrict them even when they are
set by qemu.
[inputs]: Remove usbredir.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-19 12:17:43 +02:00
Ricardo Wurmus
ad3c61fcd3
gnu: python-hy: Update to 0.13.0. 
* gnu/packages/python.scm (python-hy): Update to 0.13.0.
 2017-10-19 01:37:52 +02:00
ng0
909f02dd70
gnu: Order module imports in (gnu packages mate) alphabetically. 
* gnu/packages/mate.scm: Order module imports alphabetically.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-19 01:22:18 +02:00
Christopher Allan Webber
0ff4425cea
gnu: Add dirvish. 
* gnu/packages/backup.scm (dirvish): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-19 01:14:28 +02:00
Christopher Allan Webber
a1777c77f0
gnu: Add perl-libtime-period. 
* gnu/packages/perl.scm (perl-libtime-period): New variable.
 2017-10-19 01:13:40 +02:00
Christopher Allan Webber
7f926760ed
gnu: Add perl-libtime-parsedate. 
* gnu/packages/perl.scm (perl-libtime-parsedate): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-19 01:06:53 +02:00
Tobias Geerinckx-Rice
9d8796a516
Revert "gnu: python-pyatspi: Update to 2.26.0." 
This reverts commit 629f33e233, which breaks
orca@3.26.0.
 2017-10-18 23:58:08 +02:00
Ricardo Wurmus
c0770feedd
gnu: f-seq: Fix location of commons-cli.jar. 
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of
commons-cli.jar in the wrapper script.
 2017-10-18 23:54:16 +02:00
Tobias Geerinckx-Rice
39427f9042
gnu: eog-plugins: Update to 3.26.1. 
* gnu/packages/gnome.scm (eog-plugins): Update to 3.26.1.
 2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice
0a1a93b4aa
gnu: eog: Update to 3.26.1. 
* gnu/packages/gnome.scm (eog): Update to 3.26.1.
 2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice
629f33e233
gnu: python-pyatspi: Update to 2.26.0. 
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
 2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice
2a86fece22
gnu: btrfs-progs: Update to 4.13.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.3.
 2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice
3031b138f5
gnu: hplip: Update to 3.17.10. 
* gnu/packages/cups.scm (hplip): Update to 3.17.10.
 2017-10-18 23:25:04 +02:00
Ludovic Courtès
baa6790b4c
gnu: mailutils: Update to 3.3. 
* gnu/packages/mail.scm (mailutils): Update to 3.3.
[arguments]: Rename 'pre-build' phase to 'prepare-test-suite', and move
after 'check'.  Set 'HOME', and create ~/.mh_profile.
 2017-10-18 23:22:19 +02:00
Ludovic Courtès
8cb537acbc
gnu: perl-crypt-random-source: Use 'perl-license'. 
* gnu/packages/crypto.scm (perl-crypt-random-source)[license]: Change to
LICENSE:PERL-LICENSE.
 2017-10-18 23:22:19 +02:00
Stefan Reichör
ef5c40aa2d
gnu: Add atool. 
* gnu/packages/compression.scm (atool): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-18 23:08:39 +02:00
Marius Bakke
07dfc89859
gnu: mupdf: Fix CVE-2017-15587. 
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf)[source](patches): Use it.
 2017-10-18 22:15:09 +02:00
Ricardo Wurmus
dc1d06ba9e
gnu: python-protobuf: Update to 3.4.0. 
* gnu/packages/protobuf.scm (python-protobuf): Update to 3.4.0.
 2017-10-18 01:49:14 +02:00
Ricardo Wurmus
bfd073319c
gnu: Add protobuf-c. 
* gnu/packages/protobuf.scm (protobuf-c): New variable.
 2017-10-18 01:49:14 +02:00
Ricardo Wurmus
dd12d4aad0
gnu: protobuf: Update to 3.4.1. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.4.1.
 2017-10-18 01:49:14 +02:00
Marius Bakke
b2850fd170
gnu: nginx: Update to 1.12.2. 
* gnu/packages/web.scm (nginx): Update to 1.12.2.
 2017-10-17 21:05:54 +02:00
Marius Bakke
790d33c3bb
gnu: rofi: Update to 1.4.2. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.4.2.
 2017-10-17 21:05:54 +02:00
Ricardo Wurmus
e059bdc9a7
gnu: r-tidyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
d8455fe146
gnu: r-tidyselect: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus
711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
 2017-10-17 20:58:23 +02:00