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Author SHA1 Message Date
Ricardo Wurmus
f212bf84ab
gnu: r-git2r: Update to 0.19.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus
63f934e672
gnu: r-backports: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus
c832d326a1
gnu: r-formula: Update to 1.2-2. 
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
f05c6275b7
gnu: r-r6: Update to 2.2.2. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
b07c8c0156
gnu: r-knitr: Update to 1.16. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
6dc86e8dfc
gnu: r-formatr: Update to 1.5. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
12cd797541
gnu: r-evaluate: Update to 0.10.1. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
d5ce380711
gnu: r-dbi: Update to 0.7. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus
831858a7d3
gnu: r-bit64: Update to 0.9-7. 
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus
74b037df64
gnu: r-foreign: Update to 0.8-69. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus
af1eeabe89
gnu: r-boot: Update to 1.3-20. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus
e584b9fc1b
gnu: r-curl: Update to 2.8.1. 
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
 2017-08-03 17:53:45 +02:00
Ricardo Wurmus
53deffe5e9
gnu: r-htmlwidgets: Update to 0.9. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
 2017-08-03 17:53:45 +02:00
Ricardo Wurmus
850151058d
gnu: r-htmltools: Update to 0.3.6. 
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
 2017-08-03 17:53:45 +02:00
Ricardo Wurmus
a1e54db2ac
gnu: r-servr: Update to 0.6. 
* gnu/packages/web.scm (r-servr): Update to 0.6.
 2017-08-03 17:53:45 +02:00
Ricardo Wurmus
9fe794f0f7
gnu: r-jsonlite: Update to 1.5. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
 2017-08-03 17:53:45 +02:00
Ricardo Wurmus
2d81bc16a9
gnu: r-httpuv: Update to 1.3.5. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus
0f2eee0d96
gnu: r-pracma: Update to 2.0.7. 
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus
c628b8418a
gnu: r-ranger: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
f9b3760636
gnu: r-plotly: Update to 4.7.1. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
d59050823e
gnu: r-igraph: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
7b3688150b
gnu: r-purrr: Update to 0.2.2.2. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
5fc74f24bf
gnu: r-devtools: Update to 1.13.3. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
aad948a0ea
gnu: r-tibble: Update to 1.3.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus
a40b2c2129
gnu: r-dplyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus
4bb0b4cc0a
gnu: Add r-bindrcpp. 
* gnu/packages/cran.scm (r-bindrcpp): New variable.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus
eed58a0886
gnu: Add r-bindr. 
* gnu/packages/cran.scm (r-bindr): New variable.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus
736332c79c
gnu: r-rcpp: Update to 0.12.12. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus
847b457253
gnu: r-plogr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
 2017-08-03 17:53:41 +02:00
Ricardo Wurmus
5bee6bf409
gnu: Add r-glue. 
* gnu/packages/cran.scm (r-glue): New variable.
 2017-08-03 17:53:41 +02:00
Danny Milosavljevic
dd4b7476ec
gnu: Add grub-hybrid. 
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
 2017-08-03 16:35:34 +02:00
Ben Woodcroft
75e6639f36
gnu: htseq: Use PyPI URI. 
This is a follow-up to 92971d68ac.

* gnu/packages/bioinformatics.scm (htseq)[source]: Use 'pypi-uri'.
 2017-08-03 21:08:13 +10:00
Ben Woodcroft
92971d68ac
gnu: htseq: Update to 0.9.1. 
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package.  Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
 2017-08-03 21:02:30 +10:00
Efraim Flashner
a8ead6f91b
gnu: vc: Limit to x86_64 and i686. 
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
 2017-08-03 13:34:18 +03:00
Manolis Ragkousis
5638d71502
gnu: openscenegraph: Add 'Release' configure flag. 
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
 2017-08-03 10:35:31 +03:00
Eric Bavier
68a29ab8d0
gnu: Add LeoCAD. 
* gnu/packages/lego.scm (leocad): New variable.
 2017-08-03 00:33:02 -05:00
Tobias Geerinckx-Rice
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
 2017-08-03 05:31:24 +02:00
Tobias Geerinckx-Rice
6862c72373
gnu: tor: Update to 0.3.0.10. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
 2017-08-03 01:56:22 +02:00
Efraim Flashner
edd08fb7ac
gnu: glibc@2.22: Fix security issues. 
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.

* gnu/packages/base.scm (glibc@2.22)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-02 21:51:35 +03:00
Efraim Flashner
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}. 
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-08-02 21:51:33 +03:00
Efraim Flashner
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180. 
* gnu/packages/base.scm (glibc@2.24)[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-02 21:51:31 +03:00
Leo Famulari
2c5cf84430
gnu: python2-conda: Fix build by building with enum34. 
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
 2017-08-02 14:39:33 -04:00
Manolis Ragkousis
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input. 
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
 2017-08-02 20:20:12 +03:00
Efraim Flashner
721d7a6912
gnu: gcc@4.7: Don't built on aarch64. 
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
 2017-08-02 19:14:26 +03:00