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Author SHA1 Message Date
Efraim Flashner
8ad22b42b1
gnu: urlscan: Update to 0.9.7. 
* gnu/packages/mail.scm (urlscan): Update to 0.9.7.
 2021-11-26 15:46:16 +02:00
Efraim Flashner
63661eacca
gnu: viewnior: Update to 1.8. 
* gnu/packages/image-viewers.scm (viewnior): Update to 1.8.
[home-page]: Use https.
 2021-11-26 15:46:01 +02:00
Efraim Flashner
d711b72f14
gnu: vim-fugitive: Update to 3.6. 
* gnu/packages/vim.scm (vim-fugitive): Update to 3.6.
 2021-11-26 15:37:36 +02:00
zimoun
128fd2ab59
gnu: Add r-derfinderhelper. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-26 13:51:00 +01:00
Ludovic Courtès
d19aff9339
gnu: ceres-solver: Install library to lib/ instead of lib64/. 
* gnu/packages/maths.scm (ceres)[arguments]: In 'set-library-directory'
phase, modify the top-level 'CMakeLists.txt'.
 2021-11-26 13:51:00 +01:00
Charles
38745deaec
gnu: Update cl-salza2 to 2.1. 
* gnu/packages/lisp-xyz.scm (sbcl-salza2): Update to 2.1.
  [inputs]: Add trivial-gray-streams.
  [native-inputs]: Add chipz, flexi-streams and parachute.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-26 13:41:22 +01:00
Josselin Poiret
b90504cdb5
installer: Rework installation device detection. 
* gnu/installer/parted.scm (installation-device): Remove it.
* gnu/installer/parted.scm (installer-root-partition-path): Add it.
* gnu/installer/parted.scm (non-install-devices): Add installation-device?
predicate.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-11-26 10:52:02 +00:00
Efraim Flashner
5d93e9e36a
gnu: git-annex: Honor the #:tests? flag. 
* gnu/packages/haskell-apps.scm (git-annex)[arguments]: Adjust the
custom 'check phase to honor the #:tests? flag.
 2021-11-26 11:00:17 +02:00
Kyle Meyer
4b632fb864
gnu: git-annex: Update to 8.20211123. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20211123.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-26 10:26:31 +02:00
Nicolas Goaziou
37aaee14a1
gnu: pyzo: Remove trailing #T. 
* gnu/packages/python-xyz.scm (pyzo)[arguments]: Remove #T from
`fix-home-directory' phase.
 2021-11-26 08:48:39 +01:00
Nicolas Goaziou
8182a3d1a9
gnu: pyzo: Update to 4.11.4. 
* gnu/packages/python-xyz.scm (pyzo): Update to 4.11.4.
 2021-11-26 08:43:05 +01:00
Diego Nicola Barbato
d13d5f3141
gnu: webkitgtk: Really disable SSE2 on non-x86_64 achitectures. 
This is a followup to d82fd7c2dd.

* gnu/packages/webkit.scm (webkitgtk)[phases]{disable-sse2}: Adjust.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-25 22:56:09 -05:00
Tanguy Le Carrour
b2022a09eb
gnu: vdirsyncer: Update to 0.18.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.18.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-11-25 14:10:45 -05:00
Tanguy Le Carrour
aab9e79fa4
gnu: python-click-threading: Update to 0.5.0. 
* gnu/packages/python-xyz.scm (python-click-threading): Update to 0.5.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-11-25 14:10:42 -05:00
Foo Chuan Wei
ea7233befb
gnu: Add cl-restas. 
* gnu/packages/lisp-xyz.scm (cl-restas, ecl-restas, sbcl-restas):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-25 14:38:51 +01:00
Foo Chuan Wei
59a7e5bb7e
gnu: Add cl-data-sift. 
* gnu/packages/lisp-xyz.scm (cl-data-sift, ecl-data-sift, sbcl-data-sift):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-25 14:34:21 +01:00
Arun Isaac
4fd6aabeaa
gnu: guile-libyaml: Update to 0-2.2bdacb7. 
* gnu/packages/guile-xyz.scm (guile-libyaml): Update to 0-2.2bdacb7.
[arguments]: Do not attempt to delete non-existent files. Use (system
ffi-help-rt) from nyacc package. Do not return #t from custom phases.
[native-inputs]: Move nyacc to ...
[propagated-inputs]: ... here.
 2021-11-25 10:51:07 +05:30
Arun Isaac
29b594fa16
gnu: nyacc: Update to 1.05.1. 
* gnu/packages/mes.scm (nyacc): Update to 1.05.1.
 2021-11-25 10:15:57 +05:30
Ludovic Courtès
f9b1bb916c
daemon: Read substitute nar size as 'unsigned long long'. 
Fixes <https://issues.guix.gnu.org/46212>.
Reported by Christopher Baines <mail@cbaines.net>.

Previously, the nar size returned by 'guix substitute' would be read as
an 'int'; thus, values above 2^31 - 1 would be read and then stored as
negative integers in the database.

Regression introduced in 9dfa20a22a.

* nix/libstore/build.cc (SubstitutionGoal::finished): Use templatized
'string2Int' instead of 'std::atoi' to get an 'unsigned long long',
which is the type of 'hash.second'.
* tests/store.scm ("substitute and large size"): New test.
 2021-11-25 00:17:21 +01:00
Ludovic Courtès
1eb40a6dc4
daemon: Read unsigned nar size and download size from substituter. 
Fixes <https://issues.guix.gnu.org/51983>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* nix/libstore/local-store.cc (LocalStore::querySubstitutablePathInfos):
Expect 'unsigned long long' for 'downloadSize' and 'narSize'.
* tests/store.scm ("substitute query and large size"): New test.
 2021-11-25 00:17:21 +01:00
Tobias Geerinckx-Rice
a4cbd31c5c
home: services: bash: Only source /etc/bashrc if it exists. 
* gnu/home/services/shells.scm (home-bash-configuration):
Check whether /etc/bashrc exists before trying to ‘source’ it.

Reported by guixy on #guix.
 2021-11-24 19:46:39 +01:00
Arun Isaac
c47a45ca7e
gnu: racket: Remove article from the beginning of the synopsis. 
* gnu/packages/racket.scm (racket)[synopsis]: Remove article from the
beginning.
 2021-11-25 00:07:10 +05:30
jgart
6de284e832
gnu: racket: Update to 8.3. 
* gnu/packages/racket.scm (racket-minimal, racket): Update to 8.3.
* gnu/packages/racket.scm (racket-minimal)[source]: Remove
racket-minimal-backport-1629887.patch from patches.
* gnu/packages/patches/racket-minimal-backport-1629887.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-11-24 23:59:37 +05:30
Aleksandr Vityazev
3aac086c3f
gnu: recordmydesktop: Update to 0.4.0. 
* gnu/packages/video.scm (recordmydesktop): Update to 0.4.0.
[source]: Update URI.
[home-page]: Update home-page accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-11-24 13:03:00 -05:00
Nicolas Goaziou
146c35ca81
gnu: emacs-csharp-mode: Update to 1.1.1. 
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 1.1.1.
 2021-11-24 17:14:38 +01:00
Nicolas Goaziou
538331ac3e
gnu: emacs-elfeed-score: Update to 1.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.1.
 2021-11-24 17:12:35 +01:00
Nicolas Goaziou
1172fa8cc4
gnu: scintilla: Update to 5.1.4. 
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.4.
 2021-11-24 16:50:38 +01:00
Nicolas Goaziou
2b7b736654
gnu: mame: Update to 0.238. 
* gnu/packages/emulators.scm (mame): Update to 0.238.
 2021-11-24 16:39:26 +01:00
Ricardo Wurmus
c8005b63fa
gnu: Add r-astsa. 
* gnu/packages/cran.scm (r-astsa): New variable.
 2021-11-24 16:37:14 +01:00
Nicolas Goaziou
f1d47be767
gnu: emacs-pyim: Update to 3.9.5. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.5.
 2021-11-24 16:18:39 +01:00
Pierre Neidhardt
e68a958110
gnu: sbcl-osicat: Update to 20210928. 
* gnu/packages/lisp-xyz.scm (sbcl-osicat): Update to 20210928.
 2021-11-24 14:56:51 +01:00
Julien Lepiller
4ac084e52d
gnu: ocaml-batteries: Update to 3.3.0. 
* gnu/packages/ocaml.scm (ocaml-batteries): Update to 3.3.0.
(ocaml4.07-batteries): New variable.
 2021-11-24 14:51:05 +01:00
Julien Lepiller
db61ad142d
gnu: Add ocaml-benchmark. 
* gnu/packages/ocaml.scm (ocaml-benchmark): New variable.
 2021-11-24 14:50:46 +01:00
Ricardo Wurmus
9cc8ee15d0
gnu: geary: Remove trailing #T. 
* gnu/packages/gnome.scm (geary)[arguments]: Remove trailing #T from 'check
phase.
 2021-11-24 13:52:36 +01:00
Ricardo Wurmus
d53703e4e2
gnu: geary: Add missing input. 
* gnu/packages/gnome.scm (geary)[native-inputs]: Add
gsettings-desktop-schemas for tests.
 2021-11-24 13:52:03 +01:00
Ricardo Wurmus
651fc759d7
gnu: r-s4vectors: Update to 0.32.3. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5e806fbaf4
gnu: r-mixomics: Update to 6.18.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5c6225b641
gnu: r-xcms: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
370bb5851a
gnu: r-dose: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
010806f78a
gnu: r-genomicranges: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
cfeccf8e90
gnu: r-biocparallel: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
67de75778f
gnu: r-biomart: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
639bfeca2b
gnu: Add r-bsgenome-drerio-ucsc-danrer11. 
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
a61e8f949b
gnu: r-fdrtool: Update to 1.2.17. 
* gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.17.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
80c288f785
gnu: r-car: Update to 3.0-12. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-12.
[propagated-inputs]: Remove r-rio.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
8e3189dc92
gnu: r-nloptr: Update to 1.2.2.3. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.3.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
618134a410
gnu: r-robust: Update to 0.6-1. 
* gnu/packages/statistics.scm (r-robust): Update to 0.6-1.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
8d0ab1e0c6
gnu: r-mclust: Update to 5.4.8. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.8.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
c0f8456709
gnu: r-glmnet: Update to 4.1-3. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-3.
[propagated-inputs]: Add r-rcpp and r-rcppeigen.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus
57ad700c2c
gnu: r-dt: Update to 0.20. 
* gnu/packages/statistics.scm (r-dt): Update to 0.20.
 2021-11-24 12:13:13 +01:00