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Author SHA1 Message Date
Ludovic Courtès
b90d97ec2e
ssh: Display the size of the store items being sent. 
* guix/ssh.scm (send-files): Compute the size of MISSING and display
it.
 2018-07-29 18:50:28 +02:00
Ben Woodcroft
3f8c82e6d3
gnu: taxtastic: Add missing propagated-inputs. 
* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add
python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2,
python-dendropy.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft
9e0c135c39
gnu: python-dendropy: Update to 4.4.0. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft
19601e895b
gnu: python2-psycopg2: Update to 2.7.5. 
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
 2018-07-29 22:53:10 +10:00
Ben Woodcroft
5d5a02dd4c
gnu: Add python-fastalite. 
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
 2018-07-29 21:58:00 +10:00
Christopher Lemmer Webber
10d5315361
gnu: Add chroma. 
* gnu/packages/games.scm (chroma): New variable.
 2018-07-29 09:37:20 +02:00
Mark H Weaver
f8e2df9851
gnu: linux-libre: Update to 4.17.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
 2018-07-29 03:32:03 -04:00
Mark H Weaver
c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
 2018-07-29 03:31:10 -04:00
Mark H Weaver
8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
 2018-07-29 03:30:32 -04:00
Mark H Weaver
4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
 2018-07-29 03:29:42 -04:00
Gábor Boskovits
6219685922
gnu: clojure: Fix index generation. 
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
 2018-07-29 08:41:34 +02:00
Marius Bakke
48d7ac175f
gnu: openlibm: Update to 0.6.0. 
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
 2018-07-28 18:12:13 +02:00
Marius Bakke
46bda5eb7a
gnu: glm: Update home page. 
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
 2018-07-28 17:56:59 +02:00
Marius Bakke
5ea4b5943d
gnu: glm: Update to 0.9.9.0. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
 2018-07-28 17:55:04 +02:00
Marius Bakke
71de61c353
gnu: libjpeg-turbo: Update license. 
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
 2018-07-28 17:27:16 +02:00
Marius Bakke
6871121be0
gnu: libjpeg-turbo: Update to 2.0.0. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
 2018-07-28 17:27:16 +02:00
Marius Bakke
0981ec1300
gnu: accountsservice: Update to 0.6.50. 
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
 2018-07-28 17:27:15 +02:00
Marius Bakke
35fa923d8b
gnu: dconf: Update to 0.28.0. 
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
 2018-07-28 17:27:15 +02:00
Marius Bakke
e20e6b4061
gnu: dconf: Update license. 
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
 2018-07-28 17:27:15 +02:00
Marius Bakke
03676d6f35
gnu: dconf: Install GTK documentation. 
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
 2018-07-28 17:27:15 +02:00
Marius Bakke
bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround. 
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2.  Remove INTLTOOL.
[arguments]: Remove #:phases.
 2018-07-28 17:27:15 +02:00
Ludovic Courtès
c95c9032b4
gnu: x265: Fix compilation on ARMv7. 
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-07-28 15:08:07 +02:00
Ludovic Courtès
5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux. 
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
 2018-07-28 15:08:07 +02:00
Chris Marusich
346a632144
doc: Clarify some of guix-daemon's GC options. 
Reported by Pierre Neidhardt <ambrevar@gmail.com>.

* doc/guix.texi (Invoking guix-daemon): Fix an incorrect statement
regarding --gc-keep-outputs.  Add a little to the description of this
option and --gc-keep-derivations.
 2018-07-28 03:00:16 -07:00
Kei Kebreau
b15a020dd5
gnu: allegro: Update to 5.2.4.0. 
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0.
[source]: Update URL.
 2018-07-27 14:30:49 -04:00
Ludovic Courtès
74a4fa5040
gnu: gcc@8: Update to 8.2.0. 
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
 2018-07-27 18:52:58 +02:00
Ludovic Courtès
f00d66b12c
gnu: Add font-blackfoundry-inria. 
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
 2018-07-27 18:00:06 +02:00
Ludovic Courtès
223779c4c5
gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'. 
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and
'snippet'.
 2018-07-27 18:00:06 +02:00
Ricardo Wurmus
26fd7b24ec
gnu: pigx-scrnaseq: Disable another expensive test. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc
test.
 2018-07-27 15:44:23 +02:00
Ricardo Wurmus
ed2dfe3955
gnu: Add snakemake-4. 
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
269f100330
gnu: snakemake: Add missing dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
216a72a957
gnu: Add python-datrie. 
* gnu/packages/python.scm (python-datrie): New variable.
 2018-07-27 15:30:38 +02:00
Marius Bakke
beb8511c73
gnu: imagemagick: Update to 6.9.10-8. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
 2018-07-27 14:43:43 +02:00
Marius Bakke
2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
 2018-07-27 14:43:43 +02:00
Ricardo Wurmus
b62715aa82
gnu: snakemake: Update to 5.2.0. 
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
 2018-07-27 14:19:43 +02:00
Ricardo Wurmus
22305f859b
gnu: guile-sdl2: Update to 0.3.0. 
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
 2018-07-27 14:19:33 +02:00
Danny Milosavljevic
d804d0b9ef
import: hackage: Emit native-inputs in the importer. 
* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
 2018-07-27 11:42:53 +02:00
Kei Kebreau
9dafb64711
gnu: tiled: Update to 1.1.6. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
 2018-07-27 00:17:06 -04:00
Kei Kebreau
6e92fba4b0
gnu: python-xsge: Update to 2018.02.26. 
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
 2018-07-26 23:35:45 -04:00
Kei Kebreau
d36b98ad95
gnu: freeciv: Update to 2.6.0. 
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
 2018-07-26 14:43:10 -04:00
Brendan Tildesley
e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths. 
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-07-26 13:19:57 -04:00
Marius Bakke
92526ade57
gnu: cabextract: Delete bundled libmspack. 
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
 2018-07-26 17:30:18 +02:00
Marius Bakke
e0a98e7bd5
gnu: cabextract: Update to 1.7. 
* gnu/packages/compression.scm (cabextract): Update to 1.7.
 2018-07-26 17:28:35 +02:00
Marius Bakke
4bda2274a5
gnu: fuse: Update source hash. 
The fuse 2.9.8 tarball and signature was modified in place.  Both are signed
by the same key, at different dates, and the only differences are directory
timestamps and a ChangeLog update.

* gnu/packages/linux.scm (fuse)[source](sha256): Update.
 2018-07-26 17:17:45 +02:00
Danny Milosavljevic
a9446dde2b
gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin". 
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases>
[install]: Don't install "sunxi-spl-with-ecc.bin".
 2018-07-26 15:54:52 +02:00
Danny Milosavljevic
d38755cb91
gnu: Add ruby-net-scp. 
* gnu/packages/ruby.scm (ruby-net-scp): New variable.
 2018-07-26 15:54:52 +02:00
Efraim Flashner
714b49f68d
gnu: translate-shell: Fix .el install directory. 
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Change the
install directory during the custom 'emacs-install phase to match with
other emacs .el packages.
 2018-07-26 16:14:11 +03:00
Gábor Boskovits
d60772dcdd
gnu: java-picard: Fix manifest. 
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase
'edit-classpath-in-manifest for the new manifest generation code.
 2018-07-26 12:46:50 +02:00
Efraim Flashner
bca72b39c7
gnu: python-qsintilla: Fix building. 
* gnu/packages/qt.scm (python-qscintilla)[arguments]: Extend custom
'configure phase to also patch the 'installed.txt' file.
 2018-07-26 13:21:05 +03:00
Mark H Weaver
54e543b626
gnu: linux-libre: Update to 4.17.10. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.10.
(%linux-libre-hash): Update hash.
 2018-07-26 04:45:33 -04:00