Commit graph

62624 commits

Author SHA1 Message Date
Ricardo Wurmus
87772ab4dd
gnu: r-erma: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
aab0e28fc1
gnu: r-snpstats: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.38.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
42d8cd9f97
gnu: r-gqtlbase: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7038aeb210
gnu: r-ggbio: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.36.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
07518c3a34
gnu: r-biovizbase: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.36.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7c26687871
gnu: r-organismdbi: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.30.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
39da6fbc40
gnu: r-ensembldb: Update to 2.12.1.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7a9e7e4844
gnu: r-dirichletmultinomial: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.30.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
ca5c92c0c7
gnu: r-complexheatmap: Update to 2.4.2.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
8323ff3376
gnu: r-genomicfiles: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.24.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
817e4c8b68
gnu: r-gage: Update to 2.37.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.37.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
d80a6cacaf
gnu: r-keggrest: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
3422533bd9
gnu: r-fastseg: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.34.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
5fce232977
gnu: r-annotationhub: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
334e8d7b79
gnu: r-interactivedisplaybase: Update to 1.26.3.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.26.3.
[propagated-inputs]: Add r-dt.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
15990617eb
gnu: r-edaseq: Update to 2.22.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
c9059a3b0e
gnu: r-deseq: Update to 1.39.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.39.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
019bc36732
gnu: r-aroma-light: Update to 3.18.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.18.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
f6ddf20891
gnu: r-msnid: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.22.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
10a7ee2609
gnu: r-msnbase: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.14.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
7b4fc6ae0a
gnu: r-pcamethods: Update to 1.80.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.80.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
8eb579883d
gnu: r-mzid: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
8e0d11d88b
gnu: r-vsn: Update to 3.56.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.56.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
736f6cfe66
gnu: r-affy: Update to 1.66.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.66.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
d93af7d632
gnu: r-affyio: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.58.0.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
157eb89707
gnu: r-protgenerics: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.20.0.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
d95a1cb10e
gnu: r-sva: Update to 3.36.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.36.0.
[propagated-inputs]: Add r-edger.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
c336d54d5f
gnu: r-methylkit: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.14.2.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
3475ad075b
gnu: r-copywriter: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.20.0.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
6a25fb9b6c
gnu: r-chipseq: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.38.0.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
43dec928d2
gnu: r-annotationfilter: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
05716c1b1c
gnu: r-rhdf5: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
876e05bfce
gnu: r-tximport: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.16.1.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
40a4772f09
gnu: r-mutationalpatterns: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 2.0.0.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
3c53617efc
gnu: r-rcas: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0.
[propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr,
r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2,
r-iranges, and r-ranger.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
261d931406
gnu: r-bamsignals: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:43 +02:00
Ricardo Wurmus
8f08457f05
gnu: r-rhtslib: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
52ce0d299d
gnu: r-zlibbioc: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.34.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
239ca0f3bd
gnu: r-motifrg: Update to 1.31.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.31.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
40ba4e8466
gnu: r-seqlogo: Update to 1.54.3.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.54.3.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
837e7634d9
gnu: r-genomation: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
2d537b5afc
gnu: r-seqpattern: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.20.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
e6df69a84d
gnu: r-impute: Update to 1.62.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.62.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
d9b23ec47c
gnu: r-bsgenome: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.56.0.
[propagated-inputs]: Add r-matrixstats.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
543fd63c2e
gnu: r-topgo: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.40.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
a285314e29
gnu: r-genomicfeatures: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
f85794edb8
gnu: r-rtracklayer: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.48.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
58613ca1e5
gnu: r-genomicalignments: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.24.0.
2020-06-13 01:19:42 +02:00
Ricardo Wurmus
87c98cf701
gnu: r-summarizedexperiment: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:41 +02:00
Ricardo Wurmus
46e103a1b5
gnu: r-delayedarray: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.0.
[propagated-inputs]: Remove r-biocparallel.
2020-06-13 01:19:41 +02:00