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Author SHA1 Message Date
Tobias Geerinckx-Rice
5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1. 
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-07-25 19:39:11 +02:00
Mathieu Othacehe
0236013cd0
build: utils: Trim leading slash from search-input-file input. 
Make sure that both:

(search-input-file inputs "/bin/sh") and (search-input-file inputs "bin/sh")

are supported.

* guix/build/utils (search-input-file): Trim leading slash character from
FILE.
 2021-07-25 19:13:10 +02:00
Vinicius Monego
8854acd434
gnu: Add python-hyperopt. 
* gnu/packages/machine-learning.scm (python-hyperopt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:56:58 +02:00
Maxime Devos
a682fea916
gnu: gs-font: Rename to 'font-ghostscript'. 
According to (guix)Fonts, font package names must be prefixed
with 'font-'.  Adjust 'gs-fonts' to follow this convention.

* gnu/packages/fontutils.scm
  (gs-fonts)[name]: Set to "font-ghostscript".
  (gs-fonts): Rename variable to 'font-ghostscript'.
  (gs-fonts): Add deprecated package.
* gnu/packages/ghostscript.scm
  (ghostscript)[arguments]<#:configure-flags>: Replace 'gs-fonts'
  with 'font-ghostscript'.
  (ghostscript)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontconfig)[inputs]: Likewise.
* gnu/packages/gtk.scm
  (pango-1.42)[arguments]{disable-layout-test}: Likewise.
* gnu/packages/imagemagick.scm
  (graphicsmagick)[arguments]{configure-flags}: Likewise.
  (graphicsmagick)[inputs]: Likewise.
* gnu/packages/mp3.scm (ripperx)[propagated-inputs]: Likewise.
* doc/guix.texi (X11 Fonts): Likewise.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:52:36 +02:00
Vinicius Monego
aaf94ec750
gnu: Add emacs-ob-async. 
* gnu/packages/emacs-xyz.scm (emacs-ob-async): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:50:17 +02:00
Arun Isaac
ed9d146734
gnu: oil: Respect #:tests?. 
* gnu/packages/shells.scm (oil)[arguments]: Respect #:tests? in the custom
check phase.
 2021-07-25 20:08:27 +05:30
Felix Gruber
d1318cb4de
gnu: oil: Update to 0.9.0. 
* gnu/packages/shells.scm (oil): Update to 0.9.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-07-25 19:58:05 +05:30
Wiktor Żelazny
769326cf18
gnu: Add marble-qt. 
* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/geo.scm (marble-qt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 13:51:45 +02:00
Sarah Morgensen
a92dfbce30
gnu: gmnisrv: Update to 0-2.32854b7. 
Update to latest commit. gmnisrv uses v3 X509 certificates now, and so
"requires fresh certificates, which could break clients with strict
trust-on-first-use policies."

gnu/packages/web.scm (gmnisrv): Update to 0-2.32854b7.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-07-25 15:56:02 +05:30
Morgan Smith
32b02fd99c
gnu: emacs-nov-el: Update to 0.3.4. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.4.
[arguments]<#:emacs>: Use emacs for libxml.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 12:13:01 +02:00
Thiago Jung Bauermann
52cc639403
gnu: perl: Use ‘search-input-file’ to find ‘bin/pwd’ 
A recent change makes the ‘perl’ package explicitly reference input
“coreutils” or “coreutils-minimal” by label in the ‘setup-configure’ phase
but the ‘perl-boot0’ package, which uses ‘%boot0-inputs’ as its input list,
doesn’t have such input on non-x86-linux systems. This causes the build of
‘perl-boot0’ to fail on those systems.

Therefore use ‘search-input-file’ to find ‘bin/pwd’ and avoid referencing
the input label.

* gnu/packages/perl.scm (perl)[arguments]<#:phases>: Use
‘search-input-file’ to find ‘bin/pwd’.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-25 11:58:38 +03:00
Efraim Flashner
b8894e8065
gnu: openblas: Use dynamic arch support for aarch64-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags to
build multiple architecture optimized versions for aarch64-linux.
 2021-07-25 10:29:07 +03:00
Raghav Gururajan
f703bef87a
gnu: weston: Enable some features. 
* gnu/packages/freedesktop.scm (weston)[inputs]: Add freerdp,
gstreamer and gst-plugins-base.
[configure-flags](backend-rdp,remoting): Remove flags.
(backend-default): New flag.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
dd3de0c475
gnu: freerdp: Propagate some inputs as per pkg-config files. 
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Move libxkbcommon,
openssl and wayland to ...
[propagated-inputs]: ... here.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
e0fc091319
gnu: weston: Fix package inputs. 
The newly added inputs are referenced by the package but was missing in
the package definition. Some of these inputs might have been used
by the package indirectly via propagation from other inputs. The moved
inputs are referenced in pkg-config files.

* gnu/packages/freedesktop.scm (weston)[inputs]: Add glib, libdrm,
libpng, libx11 and libxcb. Move libxkbcommon and wayland to ...
[propagated-inputs]: ... here. Add pixman.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
17a8656bc7
gnu: weston: Update to 9.0.0 and adjust arguments+inputs accordingly. 
* gnu/packages/freedesktop.scm (weston)[version]: Update to 9.0.0.
[configure-flags](c_link_args): New flag.
(simple-dmabuf-drm): Remove flag.
[native-inputs]: Add mscgen.
[inputs]: Add pipewire.
 2021-07-25 01:59:49 -04:00
Tobias Geerinckx-Rice
45881ea747
gnu: perl-http-cookiejar: Update to 0.012. 
This fixes its build which had started to fail due to a time-bomb:

  Expires=Wed, 09 Jun 2021 10:18:14 GMT

in an examples.t test cookie.

* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.012.
 2021-07-25 01:55:45 +02:00
Tobias Geerinckx-Rice
c7b51b799d
gnu: esmtp: Fix build with libesmtp >= 1.1.0. 
* gnu/packages/mail.scm (esmtp)[source]: Add patch.
* gnu/packages/patches/esmtp-add-lesmtp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-24 23:59:07 +02:00
Thiago Jung Bauermann
7bef3be1d3
gnu: texlive-bin: Use ‘--with-banner-add’ configure option 
The “Building TeX Live” manual has a section about configure options for
distro builds¹. They mention this option:

    --with-banner-add=/SomeDistro

    This isn’t technically required, but is strongly recommended, so your
    build and your distro can be distinguished from others.

Therefore add it to texlive-bin. This is how it appears on LuaTeX, for
example (it also shows up in other engines’ banners):

    $ luatex
    This is LuaTeX, Version 1.13.0 (TeX Live 2021/GNU Guix)
    restricted system commands enabled.
    **

The other options mentioned in that section are already being used.

¹ http://www.tug.org/texlive/doc/tlbuild.html#Distro-builds

* gnu/packages/tex.scm (texlive-bin)[arguments]: Add ‘--with-banner-add’
option.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-24 16:23:24 +02:00
Ludovic Courtès
1feca4be52
gnu: glibc: Remove versions 2.27 and 2.28. 
* gnu/packages/base.scm (glibc-2.28, glibc-2.27): Remove.
* gnu/packages/patches/glibc-2.27-git-fixes.patch,
gnu/packages/patches/glibc-2.27-supported-locales.patch,
gnu/packages/patches/glibc-2.28-git-fixes.patch,
gnu/packages/patches/glibc-2.28-supported-locales.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2021-07-24 16:23:24 +02:00
Ludovic Courtès
d468a03a00
gnu: Use 'search-input-directory' and 'search-input-file' where appropriate. 
This changes some of the remaining uses of this idiom:

  (string-append (assoc-ref inputs "LABEL") "FILE")

to one of:

  (search-input-file inputs "FILE")
  (search-input-directory inputs "FILE")

* gnu/packages/axoloti.scm (axoloti-patcher): Use
'search-input-directory'.
(axoloti-patcher-next): Likewise.
* gnu/packages/bioinformatics.scm (java-picard): Likewise.
* gnu/packages/bootloaders.scm (grub-hybrid): Likewise.
(u-boot-puma-rk3399): Likewise.
(u-boot-rock64-rk3328): Likewise.
(u-boot-firefly-rk3399): Likewise.
(u-boot-rockpro64-rk3399): Likewise.
(u-boot-pinebook-pro-rk3399): Likewise.
* gnu/packages/cran.scm (r-shiny): Likewise.
(r-shinytree): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Likewise.
(emacs-rime): Likewise.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/games.scm (bsd-games): Likewise.
(seahorse-adventures): Likewise.
(einstein): Likewise.
* gnu/packages/gimp.scm (gimp-fourier): Likewise.
* gnu/packages/gnome.scm (gspell): Likewise.
* gnu/packages/guile-xyz.scm (guile-libyaml): Likewise.
* gnu/packages/java.scm (icedtea-7): Likewise.
* gnu/packages/language.scm (nimf): Likewise.
* gnu/packages/lxde.scm (spacefm): Likewise.
* gnu/packages/mail.scm (claws-mail): Likewise.
* gnu/packages/netpbm.scm (netpbm): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/scheme.scm (scm): Likewise.
* gnu/packages/security-token.scm (python-fido2): Likewise.
* gnu/packages/syndication.scm (rtv): Likewise.
* gnu/packages/tls.scm (acme-client): Likewise.
* gnu/packages/web.scm (netsurf): Likewise.
* gnu/packages/wine.scm (wine-staging): Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets): Likewise.
 2021-07-24 16:23:24 +02:00
Ludovic Courtès
828cfdc47e
gnu: Use 'search-input-file' when looking for .jar files. 
* gnu/packages/bioinformatics.scm (java-picard-1.113): Use
'search-input-file' when looking for *.jar.
(fastqc): Likewise.
* gnu/packages/groovy.scm (groovy): Likewise.
* gnu/packages/java.scm (ant-bootstrap): Likewise.
(ecj-bootstrap): Likewise.
(java-cisd-base): Likewise.
(java-cisd-args4j): Likewise.
(java-cisd-jhdf5): Likewise.
(java-native-access): Likewise.
(java-native-access-platform): Likewise.
* gnu/packages/maths.scm (hdf-java): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
1ab95c2341
gnu: mozjs: Use 'which' where appropriate. 
* gnu/packages/gnuzilla.scm (mozjs-52): Use 'which' for "autoconf".
(mozjs-60): Likewise.
(mozjs-78): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
bc64d9554b
gnu: Use 'search-input-file' when looking for executables. 
* gnu/packages/admin.scm (isc-dhcp): Use 'search-input-file' when
looking for executables.
* gnu/packages/audio.scm (ableton-link): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (roary): Likewise.
(ngless): Likewise.
* gnu/packages/boost.scm (boost-for-irods): Likewise.
* gnu/packages/bootloaders.scm (grub): Likewise.
(grub-efi): Likewise.
* gnu/packages/chemistry.scm (inchi): Likewise.
* gnu/packages/dictionaries.scm (ding): Likewise.
* gnu/packages/dlang.scm (ldc): Likewise.
* gnu/packages/education.scm (childsplay): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Likewise.
(emacs-haskell-mode): Likewise.
(emacs-auctex): Likewise.
(emacs-ggtags): Likewise.
(emacs-graphviz-dot-mode): Likewise.
(emacs-flycheck-grammalecte): Likewise.
(emacs-counsel-notmuch): Likewise.
(emacspeak): Likewise.
(emacs-exwm): Likewise.
(emacs-exwm-x): Likewise.
(emacs-treemacs): Likewise.
(emacs-telega): Likewise.
(emacs-exiftool): Likewise.
* gnu/packages/emulators.scm (higan): Likewise.
* gnu/packages/engineering.scm (freehdl): Likewise.
(librepcb): Likewise.
* gnu/packages/entr.scm (entr): Likewise.
* gnu/packages/file-systems.scm (libeatmydata): Likewise.
(xfstests): Likewise.
(mergerfs): Likewise.
(mergerfs-tools): Likewise.
* gnu/packages/finance.scm (monero-gui): Likewise.
* gnu/packages/flashing-tools.scm (flashrom): Likewise.
* gnu/packages/fontutils.scm (fontforge): Likewise.
* gnu/packages/game-development.scm (python2-renpy): Likewise.
* gnu/packages/games.scm (opensurge): Likewise.
(xboard): Likewise.
(hyperrogue): Likewise.
(flare-game): Likewise.
(chessx): Likewise.
* gnu/packages/geo.scm (grass): Likewise.
* gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/gnome.scm (mm-common): Likewise.
(network-manager-openvpn): Likewise.
(network-manager-vpnc): Likewise.
(network-manager-openconnect): Likewise.
(apostrophe): Likewise.
* gnu/packages/gnupg.scm (pius): Likewise.
(jetring): Likewise.
* gnu/packages/gnuzilla.scm (icedove): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
* gnu/packages/graphviz.scm (xdot): Likewise.
* gnu/packages/guile-xyz.scm (jupyter-guile-kernel): Likewise.
* gnu/packages/haskell-xyz.scm (ghc-hindent): Likewise.
* gnu/packages/ibus.scm (ibus): Likewise.
* gnu/packages/image.scm (phockup): Likewise.
* gnu/packages/irc.scm (quassel): Likewise.
* gnu/packages/java.scm (drip): Likewise.
(ant-bootstrap): Likewise.
(tla2tools): Likewise.
* gnu/packages/julia.scm (julia): Likewise.
* gnu/packages/less.scm (lesspipe): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/linux.scm (fuse): Likewise.
(lm-sensors): Likewise.
(bluez): Likewise.
(fakeroot): Likewise.
(inputattach): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-diskspace): Likewise.
* gnu/packages/lisp.scm (lisp-repl-core-dumper): Likewise.
* gnu/packages/lua.scm (fennel): Likewise.
* gnu/packages/lxde.scm (spacefm): Likewise.
* gnu/packages/mail.scm (public-inbox): Likewise.
* gnu/packages/maths.scm (hdf-java): Likewise.
(maxima): Likewise.
(frama-c): Likewise.
* gnu/packages/messaging.scm (libgadu): Likewise.
* gnu/packages/music.scm (denemo): Likewise.
(curseradio): Likewise.
* gnu/packages/netpbm.scm (netpbm): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
(squid): Likewise.
(aircrack-ng): Likewise.
* gnu/packages/node.scm (node): Likewise.
(node-llparse-frontend-bootstrap): Likewise.
(node-llparse-bootstrap): Likewise.
(llhttp-bootstrap): Likewise.
(node-lts): Likewise.
* gnu/packages/ocaml.scm (ocaml-4.11): Likewise.
(opam): Likewise.
(ocaml-graph): Likewise.
* gnu/packages/orpheus.scm (orpheus): Likewise.
* gnu/packages/password-utils.scm (password-store): Likewise.
* gnu/packages/python.scm (pypy3): Likewise.
* gnu/packages/qt.scm (qt5ct): Likewise.
* gnu/packages/radio.scm (libosmo-dsp): Likewise.
* gnu/packages/ruby.scm (ruby-pandoc-ruby): Likewise.
* gnu/packages/rust.scm (rust-1.30): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/suckless.scm (surf): Likewise.
* gnu/packages/syndication.scm (gfeeds): Likewise.
* gnu/packages/telephony.scm (mumble): Likewise.
* gnu/packages/terminals.scm (alacritty): Likewise.
* gnu/packages/tex.scm (texlive-bin): Likewise.
* gnu/packages/uml.scm (plantuml): Likewise.
* gnu/packages/version-control.scm (python-git-multimail): Likewise.
(gitolite): Likewise.
(hg-commitsigs): Likewise.
(git-when-merged): Likewise.
(git-imerge): Likewise.
(gita): Likewise.
* gnu/packages/video.scm (you-get): Likewise.
* gnu/packages/vim.scm (eovim): Likewise.
* gnu/packages/virtualization.scm (qemu): Likewise.
(virt-manager): Likewise.
(criu): Likewise.
* gnu/packages/vpn.scm (strongswan): Likewise.
(xl2tpd): Likewise.
* gnu/packages/wm.scm (i3lock-fancy): Likewise.
* gnu/packages/wxwidgets.scm (python-wxpython): Likewise.
(python2-wxpython): Likewise.
* gnu/packages/xdisorg.scm (autorandr): Likewise.
* gnu/packages/xorg.scm (hackneyed-x11-cursors): Likewise.
(v86d): Likewise.
(mkfontdir): Likewise.
(xpra): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
377e9453ca
gnu: Use 'search-input-file' when looking for *.so and *.a. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-file' when looking for *.a and *.so.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/engineering.scm (lepton-eda): Likewise.
(pcb): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/haskell.scm (ghc-7): Likewise.
* gnu/packages/irods.scm (irods): Likewise.
* gnu/packages/language.scm (python2-tegaki-pygtk): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise.
(sbcl-cl-gobject-introspection): Likewise.
(sbcl-cl-ana): Likewise.
(sbcl-cl-libuv): Likewise.
(sbcl-cl-async): Likewise.
(sbcl-mcclim): Likewise.
(sbcl-zstd): Likewise.
(sbcl-cl-opengl): Likewise.
(sbcl-lev): Likewise.
(sbcl-cl-glfw3): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
* gnu/packages/messaging.scm (utox): Likewise.
* gnu/packages/mpi.scm (java-openmpi): Likewise.
* gnu/packages/music.scm (jack-select): Likewise.
* gnu/packages/pascal.scm (fpc): Likewise.
* gnu/packages/python-crypto.scm (python-libnacl): Likewise.
* gnu/packages/python-xyz.scm (python-cairocffi): Likewise.
(python-pyev): Likewise.
(python-pytidylib): Likewise.
* gnu/packages/radio.scm (unixcw): Likewise.
* gnu/packages/rust.scm (rust-1.32): Likewise.
* gnu/packages/security-token.scm (opensc): Likewise.
(python-pyscard): Likewise.
* gnu/packages/selinux.scm (python-setools): Likewise.
* gnu/packages/spice.scm (libcacard): Likewise.
* gnu/packages/telephony.scm (libtgvoip): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
425ccde6ae
gnu: Use 'search-input-directory' when looking for C/C++ library headers. 
* gnu/packages/arcan.scm (arcan)[arguments]: Use
'search-input-directory' for "include/libdrm" and "include/apr-1".
* gnu/packages/bioinformatics.scm (sailfish): Likewise for jellyfish.
* gnu/packages/boost.scm (boost-for-irods): Likewise for libcxx headers.
* gnu/packages/cedille.scm (cedille): Likewise for IAL headers.
* gnu/packages/compression.scm (snappy-with-clang6): Likewise for libcxx
headers.
* gnu/packages/cups.scm (hplip): Likewise for libusb headers.
* gnu/packages/emulators.scm (pcsxr): Likewise for libcdio headers.
* gnu/packages/game-development.scm (python2-renpy): Likewise for
fribidi headers.
* gnu/packages/games.scm (pokerth): Likewise for libircclient.
* gnu/packages/guile-xyz.scm (guile-persist): Likewise for Guile.
* gnu/packages/hurd.scm (hurd): Likewise for libtirpc.
* gnu/packages/irods.scm (irods, irods-client-icommands): Likewise for
libcxx, catch2, and nlohmann-json-cpp.
* gnu/packages/julia.scm (julia): Use 'search-input-file' for libuv's
errno.h.
* gnu/packages/kde-pim.scm (kdepim-runtime): Use
'search-input-directory' for "include/KF5".
(kmessagelib): Likewise.
* gnu/packages/kde.scm (kdeconnect): Likewise.
* gnu/packages/llvm.scm (clang-runtime-3.5): Likewise for libtirpc.
* gnu/packages/mpi.scm (openmpi): Likewise for "include/infiniband".
* gnu/packages/pumpio.scm (pumpa): Use 'search-input-file' for "tidy.h"
and "aspell.h".
* gnu/packages/radio.scm (dream): Use 'search-input-file' and
'search-input-directory' for pulseaudio, sndfile, etc.
* gnu/packages/selinux.scm (policycoreutils): Likewise for PAM and
libaudit.
* gnu/packages/serialization.scm (avro-cpp-1.9-for-irods): Likewise for
libcxx.
* gnu/packages/sync.scm (nextcloud-client): Likewise for "include/KF5".
* gnu/packages/video.scm (mkvtoolnix): Likewise for "include/gtest".
(libopenshot): Likewise for "include/UnitTest++".
* gnu/packages/virtualization.scm (criu): Likewise for libnl3 and for
protobuf file.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
d76b2f82af
gnu: Use 'search-input-directory' for glibc locale data. 
* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Use
'search-input-directory' when searching for glibc's "lib/locale".
* gnu/packages/gnome.scm (geocode-glib): Likewise.
* gnu/packages/package-management.scm (flatpak): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
1ec13efbd2
gnu: Use 'search-input-directory' for the Eigen header directory. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-directory' when searching for Eigen headers.
* gnu/packages/bioinformatics.scm (nanopolish): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
ae112039ac
gnu: Use 'search-input-file' when searching for Automake files. 
* gnu/packages/audio.scm (libsbsms)[arguments]: Use 'search-input-file'
when searching for Automake file.
* gnu/packages/maths.scm (hdf-java): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
00d1ccaf12
gnu: Use 'search-input-directory' for the OpenEXR header directory. 
* gnu/packages/graphics.scm (blender): Use 'search-input-directory' when
searching for "include/OpenEXR".
(blender-2.79): Likewise.
* gnu/packages/image-processing.scm (opencv): Likewise.
* gnu/packages/image-viewers.scm (luminance-hdr): Likewise.
* gnu/packages/photo.scm (darktable): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
bf182596a9
gnu: Use 'search-input-directory' for the SDL header directory. 
* gnu/packages/education.scm (gcompris)[arguments]: Use
'search-input-directory' when searching for SDL headers.
* gnu/packages/education.scm (t4k-common): Likewise.
(tuxmath): Likewise.
* gnu/packages/game-development.scm (tesseract-engine): Likewise.
* gnu/packages/games.scm (foobillard++): Likewise.
(ltris): Likewise.
(prboom-plus): Likewise.
(abbaye): Likewise.
(red-eclipse): Likewise.
(kiki): Likewise.
(tome4): Likewise.
(btanks): Likewise.
(4dtris): Likewise.
(edgar): Likewise.
* gnu/packages/python-xyz.scm (python-kivy): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
6ea7297ea4
gnu: Use 'search-input-directory' when looking for tzdata. 
* gnu/packages/backup.scm (duplicity)[arguments]: Use
'search-input-directory' for "share/zoneinfo".
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Likewise.
(pigx-bsseq): Likewise.
* gnu/packages/calcurse.scm (calcurse): Likewise.
* gnu/packages/calendar.scm (date): Likewise.
* gnu/packages/compression.scm (lhasa): Likewise.
* gnu/packages/cran.scm (r-rstan): Likewise.
* gnu/packages/django.scm (python-django): Likewise.
* gnu/packages/dlang.scm (ldc-bootstrap): Likewise.
* gnu/packages/finance.scm (ledger): Likewise.
* gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/kde-frameworks.scm (kcalendarcore): Likewise.
(kdelibs4support): Likewise.
* gnu/packages/kodi.scm (kodi): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Likewise.
* gnu/packages/python-xyz.scm (python-robotframework): Likewise.
(python-dparse): Likewise.
* gnu/packages/rrdtool.scm (rrdtool): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/vim.scm (vim): Likewise.
* gnu/packages/virtualization.scm (ganeti): Likewise.
* gnu/packages/vpn.scm (strongswan): Likewise.
* gnu/packages/xfce.scm (xfce4-panel): Likewise.
* gnu/packages/mate.scm (libmateweather): Use 'search-input-file' for
"share/zoneinfo/zone.tab".
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
07e98fb9c4
gnu: Simplify "Xvbf" invocation in pre-check phases. 
* gnu/packages/geo.scm (qgis)[arguments]: Simplify invocation of 'Xvfb'
in 'check' phase, assuming 'Xvfb' is in $PATH.
* gnu/packages/graphics.scm (opensubdiv)[arguments]: Likewise.
* gnu/packages/java-graphics.scm (java-piccolo2d-extras)[arguments]:
Likewise.
* gnu/packages/kde-frameworks.scm (kcontacts)[arguments]: Likewise.
(kdeclarative)[arguments]: Likewise.
* gnu/packages/kde-multimedia.scm (elisa)[arguments]: Likewise.
* gnu/packages/kde-plasma.scm (kscreenlocker)[arguments]: Likewise.
* gnu/packages/radio.scm (gnuradio)[arguments]: Likewise.
* gnu/packages/education.scm (gcompris-qt)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (weston)[arguments]: Likewise.
 2021-07-24 16:23:21 +02:00
Ludovic Courtès
3bf9c3afc1
gnu: tzdata: Remove input labels. 
* gnu/packages/base.scm (tzdata)[arguments]: Turn flags and phases into
a gexp.
[inputs]: Turn into a plain list.
 2021-07-24 16:23:20 +02:00
Ludovic Courtès
c192751fe1
gnu: commencement: Use gexps and 'local-file' to refer to patches. 
* gnu/packages/commencement.scm (tcc-boot): Remove stale comments.
(gcc-core-mesboot0)[native-inputs]: Remove "boot-patch".
[arguments]: Turn flags and phases into gexps.  Use 'local-file' in the
'apply-boot-patch' phase to refer to the patch.
(glibc-mesboot0)[native-inputs]: Remove "boot-patch" and "system-patch".
[arguments]: Turn flags and phases into gexps.  Use 'local-file' in the
'apply-boot-patch' phase to refer to the patches.
(gcc-mesboot0)[native-inputs]: Remove "boot-patch".
[arguments]: Turn phases into a gexp.
(gcc-core-mesboot1)[native-inputs]: Remove "boot-patch".
[arguments]: Turn flags and phases into gexps.  Use 'local-file' in the
'apply-boot-patch' phase to refer to the patch.
(gcc-mesboot1)[arguments]: Turn flags and phases into gexps.
(glibc-headers-mesboot)[arguments]: Likewise.
(glibc-mesboot)[arguments]: Likewise.
 2021-07-24 16:22:48 +02:00
Guillaume Le Vaillant
e463e09dc2
services: dhcpd: Fix activation with IPv6 configuration. 
* gnu/services/networking.scm (dhcpd-activation): Pass the IP version
  parameter to dhcpd.
 2021-07-24 15:38:03 +02:00
Pierre Neidhardt
fe0c3aee02
gnu: Add feeder. 
* gnu/packages/lisp-xyz.scm (cl-feeder, ecl-feeder, sbcl-feeder): New variables.
 2021-07-24 11:58:45 +02:00
Tobias Geerinckx-Rice
c3c003be69
gnu: java-xmlpull2: Use mirrored source and archived home page. 
* gnu/packages/xml.scm (java-xmlpull2)[source]: Download from a Gentoo
distfiles mirror.
[home-page]: Point to an archive.org snapshot.
 2021-07-23 23:29:34 +02:00
Marius Bakke
277f58040b
gnu: graphviz: Use HTTPS home page. 
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
 2021-07-23 17:29:34 +02:00
Marius Bakke
379bb236d4
gnu: php: Update to 7.4.21. 
* gnu/packages/php.scm (php): Update to 7.4.21.
[arguments]: Remove trailing #t's.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
 2021-07-23 17:29:34 +02:00
Marius Bakke
71ec85b295
gnu: Python: Disable indeterministic optimizations. 
* gnu/packages/python.scm (python-2.7)[arguments]: Remove "--with-lto" and
"--enable-optimizations" from #:configure-flags.
 2021-07-23 17:26:47 +02:00
Marius Bakke
79c2812130
gnu: Python: Compile bytecode in all outputs. 
* gnu/packages/python.scm (python-2.7)[arguments]: Ensure the post-install
phases run in order.  Move rebuild-bytecode last and run it on every output.
* gnu/packages/python.scm (python-3.9)[arguments]: Run the rebuild-bytecode
phase on every output.
 2021-07-23 17:26:47 +02:00
Marius Bakke
65c5efd14e
gnu: Python: Delete existing compiled files before compiling bytecode. 
* gnu/packages/python.scm (python-3.9)[arguments]: Delete existing pycs before
calling "compileall".
 2021-07-23 17:26:47 +02:00
Marius Bakke
7c2c698862
gnu: Python: Fix bytecode compilation. 
* gnu/packages/python.scm (python-3.9)[arguments]: In the rebuild-bytecode
phase, actully run Python instead of defining an anonymous procedure.  While
at it, create all optimization levels with the same command instead of running
once for each level.
 2021-07-23 17:26:46 +02:00
Marius Bakke
ea562aba69
gnu: Python: Do not embed timestamps in wheel files. 
* gnu/packages/python.scm (python-3.9)[arguments]: Reset timestamps before
zipping wheels.  While at it, remove redundant regex argument.
 2021-07-23 17:26:46 +02:00
Marius Bakke
09b002622e
gnu: graphviz: Update to 2.48.0. 
* gnu/packages/graphviz.scm (graphviz): Update to 2.48.0.
[source](uri): Adjust for upstream change.
[source](file-name): Remove.
[inputs]: Change from GUILE-2.0 to GUILE-3.0.
 2021-07-23 17:26:46 +02:00
Marius Bakke
b389d1b18c
gnu: graphviz: Don't hard code Guile version. 
* gnu/packages/graphviz.scm (graphviz)[arguments]: Install Guile bindings for
the version of Guile provided as input.
 2021-07-23 17:26:46 +02:00
Marius Bakke
8561fdc85b
gnu: graphviz: Turn arguments into a gexp. 
* gnu/packages/graphviz.scm (graphviz)[arguments]: Use a gexp for the
modify-phases block.  Remove trailing #t's while at it.
 2021-07-23 17:26:46 +02:00
Marius Bakke
9141483dee
gnu: perl-test-needs: Update to 0.002009. 
* gnu/packages/perl-check.scm (perl-test-needs): Update to 0.002009.
 2021-07-23 17:26:46 +02:00
Marius Bakke
8e0927faea
gnu: libcap: Update to 2.51. 
* gnu/packages/linux.scm (libcap): Update to 2.51.
 2021-07-23 17:26:46 +02:00