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Author SHA1 Message Date
Tobias Geerinckx-Rice
2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice
55f4282e0c
gnu: guile-colorized: Move project home. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source, home-page]: Update.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice
1340ce2899
gnu: guile-colorized: Don't use unstable tarball. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-12 02:22:33 +01:00
Brian Leung
1bc24bbf00
gnu: Add emacs-debpaste. 
* gnu/packages/emacs-xyz.scm (emacs-debpaste): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Brian Leung
6f93b525d3
gnu: Add emacs-xml-rpc. 
* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Rutger Helling
7959ccac3f
gnu: swaylock: Fix indentation. 
* gnu/packages/wm.scm (swaylock): Fix indentation.
 2019-03-11 20:31:30 +01:00
Rutger Helling
b0805973cd
gnu: Add swaylock. 
* gnu/packages/wm.scm (swaylock): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling
06ae5efcf3
gnu: Add swayidle. 
* gnu/packages/wm.scm (swayidle): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling
2ff844f090
gnu: Add sway. 
* gnu/packages/wm.scm (sway): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling
eea969cf8d
gnu: Add wlroots. 
* gnu/packages/wm.scm (wlroots): New variable.
 2019-03-11 20:28:41 +01:00
Pierre Neidhardt
684626763f
gnu: emacs-magit: Fix perl path in dedicated variable. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Do it.
 2019-03-11 19:01:49 +01:00
Pierre Neidhardt
842e66c573
gnu: Add emacs-lorem-ipsum. 
* gnu/packages/emacs-xyz.scm (emacs-lorem-ipsum): New variable.
 2019-03-11 18:46:25 +01:00
Oleg Pykhalov
34e3d028b9
gnu: emacs-json-reformat: Fix test. 
This patch deletes a test which tries to compare JSON objects order.

* gnu/packages/emacs-xyz.scm (emacs-json-reformat): Delete
'json-reformat-test:json-reformat-region' test.
 2019-03-11 19:52:39 +03:00
Ricardo Wurmus
4948c23677
gnu: r-with-tests: Update to 3.5.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.3.
 2019-03-11 15:25:27 +01:00
Tobias Geerinckx-Rice
e445bd1607
gnu: s6-linux-utils: Update to 2.5.0.1. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.0.1.
 2019-03-11 13:25:15 +01:00
Tobias Geerinckx-Rice
8dc458bb18
gnu: s6-linux-init: Update to 0.4.0.1. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 0.4.0.1.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice
b673d2d793
gnu: s6-portable-utils: Update to 2.2.1.3. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.3.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice
0953b09aa8
gnu: s6-rc: Update to 0.5.0.0. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.0.0.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice
8722fd43d4
gnu: s6-networking: Update to 2.3.0.4. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.4.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice
ce3262e9a3
gnu: s6-dns: Update to 2.3.0.2. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.2.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice
6954594d5c
gnu: s6: Update to 2.8.0.0. 
* gnu/packages/skarnet.scm (s6): Update to 2.8.0.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice
5c9bf737c4
gnu: execline: Update to 2.5.1.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.5.1.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice
a699a81b84
gnu: skalibs: Update to 2.8.0.1. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.8.0.1.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice
5e5bd81843
gnu: picocom: Fix description. 
* gnu/packages/terminals.scm (picocom)[synopsis]: Shorten.
[description]: Properly introduce.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice
33238b5520
gnu: picocom: Update to 3.1. 
* gnu/packages/terminals.scm (picocom): Update to 3.1.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice
130c12c9b9
gnu: perl-image-exiftool: Update to 11.31. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.31.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice
0234f4af27
gnu: perl-image-exiftool: Add upstream URL. 
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Also download
from the home page.
 2019-03-11 13:25:11 +01:00
Mark H Weaver
3edd7a3f4c
gnu: linux-libre: Update to 5.0.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.1.
(%linux-libre-hash): Update hash.
 2019-03-11 07:14:58 -04:00
Mark H Weaver
32ede5bbf9
gnu: linux-libre@4.19: Update to 4.19.28. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.28.
(%linux-libre-4.19-hash): Update hash.
 2019-03-11 07:14:01 -04:00
Efraim Flashner
2206f23679
gnu: Add eternalterminal. 
* gnu/packages/terminals.scm (eternalterminal): New variable.
 2019-03-11 10:30:58 +02:00
Efraim Flashner
a5c8460a6d
gnu: crawl: Build without SSE only on some architecures. 
This is a follow-up to b89284407f.

* gnu/packages/games.scm (crawl)[arguments]: Remove custom 'patch-flags
phase, add make-flag on non-x86* architectures to build without SSE.
 2019-03-11 10:06:29 +02:00
Tobias Geerinckx-Rice
93a72fa7c9
gnu: xvid: Update to 1.3.5. 
* gnu/packages/video.scm (xvid): Update to 1.3.5.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice
d05c14dfc9
gnu: python-acme, certbot: Update to 0.32.0. 
* gnu/packages/tls.scm (python-acme): Update to 0.32.0.
(certbot)[source]: Update hash.
[native-inputs]: Replace python-nose with python-pytest.
[propagated-inputs]: Add python-cryptography.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice
4d34fe4681
gnu: avidemux: Update to 2.7.2. 
* gnu/packages/video.scm (avidemux): Update to 2.7.2.
[arguments]: Update version of included ffmpeg.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice
642de36b9e
gnu: avidemux: Factorise ffmpeg version. 
* gnu/packages/video.scm (avidemux)[arguments]: Move oft-repeated
hard-coded ffmpeg version number to a single let-bound variable.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice
7d3ac6c08e
gnu: avidemux: Don't use NAME in source URI. 
* gnu/packages/video.scm (avidemux)[source]: Hard-code NAME.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice
129294e748
gnu: youtube-dl: Update to 2019.03.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.09.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice
585be42f46
gnu: texmaker: Update to 5.0.3. 
* gnu/packages/tex.scm (texmaker): Update to 5.0.3.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice
dbfb24824b
gnu: stunnel: Update to 5.50. 
* gnu/packages/web.scm (stunnel): Update to 5.50.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice
a9644c5a49
gnu: you-get: Update to 0.4.1270. 
* gnu/packages/video.scm (you-get): Update to 0.4.1270.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice
266cd19eb9
gnu: nginx-documentation: Update to 2019-03-01-2345-7ef11708457e. 
* gnu/packages/web.scm (nginx-documentation): Update to 2019-03-01-2345-7ef11708457e.
[arguments]: Simplify substitution.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice
fd46742dd2
gnu: nginx: Update to 1.15.9. 
* gnu/packages/web.scm (nginx): Update to 1.15.9.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice
0330d6b2bf
gnu: xf86-video-ati: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice
77ad8ec4fc
gnu: xf86-video-amdgpu: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice
c170080689
gnu: console-setup: Update to 1.190. 
* gnu/packages/xorg.scm (console-setup): Update to 1.190.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice
0189045904
gnu: snd: Update to 19.2. 
* gnu/packages/audio.scm (snd): Update to 19.2.
 2019-03-11 02:08:00 +01:00
Ludovic Courtès
45fef894eb
gnu: gnome-shell: Avoid top-level reference to inkscape. 
Fixes <https://bugs.gnu.org/34806>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gnome.scm (gnome-shell)[source](snippet): Remove
reference to INKSCAPE.  Instead, simply copy the SVG file to
data/theme.
[arguments]: Add 'convert-logo-to-png' phase.
[native-inputs]: Add INKSCAPE.
 2019-03-10 23:41:33 +01:00
Tobias Geerinckx-Rice
5ae5932b2f
gnu: ansible: Update to 2.7.8 [fixes CVE-2019-3828]. 
* gnu/packages/admin.scm (ansible): Update to 2.7.8.
 2019-03-10 23:00:08 +01:00
Marius Bakke
7fda7b8fad
gnu: pugixml: Build as shared library. 
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
 2019-03-10 21:44:25 +01:00
Marius Bakke
e2bdf60982
gnu: FileZilla: Update to 3.41.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.41.1.
 2019-03-10 21:44:25 +01:00
Marius Bakke
6324727770
gnu: pugixml is a regular input. 
* gnu/packages/emulators.scm (mame)[native-inputs]: Move PUGIXML ...
[inputs]: ... here.
* gnu/packages/ftp.scm (filezilla)[native-inputs, inputs]: Likewise.
 2019-03-10 21:44:25 +01:00
Marius Bakke
41ce92501b
gnu: xfd: Update to 1.1.3. 
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke
06e3ed5d19
gnu: xprop: Update to 1.2.4. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
 2019-03-10 18:30:51 +01:00
Marius Bakke
df8dbfb30b
gnu: notmuch: Update to 0.28.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke
2c0cf9eec7
gnu: xapian: Update to 1.4.11. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
 2019-03-10 18:30:51 +01:00
Marius Bakke
511930c294
gnu: libmspack: Update to 0.10.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
 2019-03-10 18:30:50 +01:00
Marius Bakke
755226e9c2
gnu: python-dask: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
 2019-03-10 18:30:50 +01:00
Marius Bakke
f1fff66be5
gnu: elogind: Update to 239.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
 2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice
6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner). 
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
 2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice
10bd2889d2
gnu: sane-backends: Support PNG scanimage output. 
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
 2019-03-10 16:33:55 +01:00
Ricardo Wurmus
ca32afacf9
gnu: Add btanks. 
* gnu/packages/games.scm (btanks): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus
d7764d42e4
gnu: Add libsmpeg-with-sdl1. 
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus
8ada024ba6
gnu: Add 4dtris. 
* gnu/packages/games.scm (4dtris): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus
c06709b8a4
gnu: Add slingshot. 
* gnu/packages/games.scm (slingshot): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus
05487ed8e6
gnu: scons: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
 2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice
4eb57ca883
gnu: Add opensmtpd-next. 
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
 2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice
380384e419
gnu: ibus: Update Unicode data to 12.0.0. 
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
 2019-03-10 13:37:18 +01:00
Pierre Neidhardt
2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
 2019-03-09 12:30:24 +01:00
Ricardo Wurmus
7d4cab7473
gnu: Add openfst. 
* gnu/packages/machine-learning.scm (openfst): New variable.
 2019-03-09 10:43:37 +01:00
Pierre Neidhardt
983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Tobias Geerinckx-Rice
373abfb398
gnu: lynis: Update to 2.7.2. 
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
7b957a3344
gnu: youtube-viewer: Update to "3.5.4. 
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
37fc44eab9
gnu: dovecot: Avoid unnecessary patching. 
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
f762e49f28
gnu: dovecot: Indent arguments. 
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice
7969751f54
gnu: i3lock-color: Update to 2.12.c. 
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice
f45cc966ba
gnu: i3lock-color: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice
a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Ricardo Wurmus
74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt. 
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
 2019-03-08 23:18:56 +01:00
Ricardo Wurmus
8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ricardo Wurmus
f87dcb4d75
gnu: Add texlive-latex-pdfx. 
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
 2019-03-08 21:49:25 +01:00
Ricardo Wurmus
cafd4d387b
gnu: Add texlive-latex-xmpincl. 
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
 2019-03-08 21:48:19 +01:00
Ricardo Wurmus
847768b9cc
gnu: Add translate2geda. 
* gnu/packages/engineering.scm (translate2geda): New variable.
 2019-03-08 21:45:29 +01:00
Ricardo Wurmus
a734da8675
gnu: Add rkrlv2. 
* gnu/packages/music.scm (rkrlv2): New variable.
 2019-03-08 21:02:49 +01:00
Danny Milosavljevic
eb6ef893e8
gnu: fc-host-tools: Update to 10. 
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
 2019-03-08 19:33:04 +01:00
Efraim Flashner
606c198788
gnu: crawl: Find all the included headers. 
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
 2019-03-08 17:22:29 +02:00
Efraim Flashner
b89284407f
gnu: crawl: Don't assume system architecture. 
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
 2019-03-08 17:22:29 +02:00
Efraim Flashner
fc7d6bc60d
gnu: crawl: Build with python3-wrapper. 
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
 2019-03-08 17:22:26 +02:00
Vagrant Cascadian
fb0aeaacea
gnu: u-boot: Remove openssl input. 
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-08 12:31:37 +01:00
Rutger Helling
75f0bda71a
gnu: flatpak: Add more dependencies. 
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
 2019-03-08 11:50:56 +01:00
Ricardo Wurmus
daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus
183b6575e7
gnu: r-mzr: Update to 2.16.2. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
6453d7aecc
gnu: r-gviz: Update to 1.26.5. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
101dcc29d3
gnu: r-ensembldb: Update to 2.6.7. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d3713237c5
gnu: r-annotationhub: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
53e7f028ed
gnu: r-rhtslib: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
d493043daf
gnu: r-rtracklayer: Update to 1.42.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus
57f40dc220
gnu: r-rsamtools: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus
58209b1e21
gnu: r-biocparallel: Update to 1.16.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus
cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus
fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus
8972989e10
gnu: r-dexseq: Update to 1.28.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
 2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice
792d3ed7eb
gnu: man-pages: Update to 5.00. 
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
 2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice
13b1fb5c92
gnu: dovecot: Update to 2.3.5. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
 2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice
2fa1a3a808
gnu: dovecot: Don't use NAME in source URI. 
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
 2019-03-08 01:34:40 +01:00
Ricardo Wurmus
933dad9156
gnu: Add mruby. 
* gnu/packages/ruby.scm (mruby): New variable.
 2019-03-08 00:07:45 +01:00
Ricardo Wurmus
20662a3020
gnu: r-ggmap: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus
8f37f53837
gnu: r-readxl: Update to 1.3.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus
f544ab3379
gnu: r-sys: Update to 3.0. 
* gnu/packages/cran.scm (r-sys): Update to 3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus
790db519f4
gnu: r-servr: Update to 0.13. 
* gnu/packages/cran.scm (r-servr): Update to 0.13.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus
e89d54278d
gnu: r-flextable: Update to 0.5.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus
e190d9af6c
gnu: r-proxy: Update to 0.4-23. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
bef78244de
gnu: r-haven: Update to 2.1.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
59c513422c
gnu: r-emdbook: Update to 1.3.11. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
937e15571c
gnu: r-rmysql: Update to 0.10.17. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
2170a36c3b
gnu: r-gower: Update to 0.2.0. 
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
532b359865
gnu: r-jomo: Update to 2.6-7. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus
d2cd541cc7
gnu: r-mice: Update to 3.4.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
22777c8657
gnu: r-xfun: Update to 0.5. 
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
87bb1b8c9e
gnu: r-metap: Update to 1.1. 
* gnu/packages/cran.scm (r-metap): Update to 1.1.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
d8787b3387
gnu: r-ifultools: Update to 2.0-5. 
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
00fb320392
gnu: r-later: Update to 0.8.0. 
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
8b2c80b8a3
gnu: r-vim: Update to 4.8.0. 
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
b9b1041324
gnu: r-fnn: Update to 1.1.3. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus
ea010aa31e
gnu: r-arules: Update to 1.6-3. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
f5ce1dcce2
gnu: r-zip: Update to 2.0.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
bbe9421174
gnu: r-maptools: Update to 0.9-5. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
d3f22f0aea
gnu: r-reticulate: Update to 1.11.1. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
fd1a17a522
gnu: r-officer: Update to 0.3.3. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
7754557090
gnu: r-prediction: Update to 0.3.6.2. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
1007b1b6d2
gnu: r-slam: Update to 0.1-45. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-45.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus
a431c38166
gnu: r-hash: Update to 2.2.6.1. 
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.1.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
a6a87db8ce
gnu: r-dvmisc: Update to 1.1.3. 
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3.
[propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2,
r-mvtnorm, r-pracma, r-purrr, and r-survey.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
5093cbdc04
gnu: r-summarytools: Update to 0.9.2. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.2.
[propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
b1f39e8c38
gnu: r-multcomp: Update to 1.4-10. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-10.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
e0f861649c
gnu: r-emmeans: Update to 1.3.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.3.
[propagated-inputs]: Add r-numderiv.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
e2fee46f04
gnu: r-afex: Update to 0.23-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
f18ca07eef
gnu: r-lmertest: Update to 3.1-0. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
91f0b745f6
gnu: r-ks: Update to 1.11.4. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus
0b14b100a2
gnu: r-tidytree: Update to 0.2.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
4bc5d45144
gnu: r-bigrquery: Update to 1.1.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
8a05d17037
gnu: r-gmp: Update to 0.5-13.4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
7706a98cda
gnu: r-huge: Update to 1.3.0. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
f59cdeaf25
gnu: r-igraph: Update to 1.2.4. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
6caf80fbaf
gnu: r-lme4: Update to 1.1-21. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
34a98f79d7
gnu: r-forcats: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
 2019-03-07 23:52:39 +01:00