mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-26 06:18:07 -05:00
06ed1dba35
* gnu/packages/chemistry.scm (gromacs): New variable. * gnu/packages/patches/gromacs-tinyxml2.patch: New file... * gnu/local.mk (dist_patch_DATA): ...add it here. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
67 lines
2.6 KiB
Diff
67 lines
2.6 KiB
Diff
Unbundling tinyxml2 from gromacs and using our own, which is newer, broke gromacs
|
|
build.
|
|
|
|
This patch fixes three issues:
|
|
|
|
- cmake now errors out if using multiple target_link_libraries with mixed styles
|
|
of signatures.
|
|
|
|
- Error handling API changed, fix the testutils/refdata_xml.cpp code by using the
|
|
new API: document.ErrorStr() & tinyxml2::XML_SUCCESS.
|
|
|
|
Those fixes will be submitted for inclusion to upstream, but may not be suitable
|
|
there as long as they still keep the old version bundled.
|
|
|
|
First hunk has already been requested for merging. Third is in discussion. Second
|
|
will only be sent if third is OK'ed.
|
|
|
|
diff -ruN gromacs-2020.2/src/testutils/CMakeLists.txt gromacs-2020.2-fixed/src/testutils/CMakeLists.txt
|
|
--- gromacs-2020.2/src/testutils/CMakeLists.txt 2020-04-30 18:33:44.000000000 +0200
|
|
+++ gromacs-2020.2-fixed/src/testutils/CMakeLists.txt 2020-05-01 22:52:16.356000000 +0200
|
|
@@ -73,7 +73,7 @@
|
|
|
|
if(HAVE_TINYXML2)
|
|
include_directories(SYSTEM ${TinyXML2_INCLUDE_DIR})
|
|
- target_link_libraries(testutils ${TinyXML2_LIBRARIES})
|
|
+ target_link_libraries(testutils PRIVATE ${TinyXML2_LIBRARIES})
|
|
else()
|
|
include_directories(BEFORE SYSTEM "../external/tinyxml2")
|
|
endif()
|
|
diff -ruN gromacs-2020.2/src/testutils/refdata_xml.cpp gromacs-2020.2-fixed/src/testutils/refdata_xml.cpp
|
|
--- gromacs-2020.2/src/testutils/refdata_xml.cpp 2020-04-30 18:33:44.000000000 +0200
|
|
+++ gromacs-2020.2-fixed/src/testutils/refdata_xml.cpp 2020-05-01 23:17:09.556000000 +0200
|
|
@@ -206,21 +206,12 @@
|
|
document.LoadFile(path.c_str());
|
|
if (document.Error())
|
|
{
|
|
- const char* errorStr1 = document.GetErrorStr1();
|
|
- const char* errorStr2 = document.GetErrorStr2();
|
|
+ const char* errorStr = document.ErrorStr();
|
|
std::string errorString("Error was ");
|
|
- if (errorStr1)
|
|
- {
|
|
- errorString += errorStr1;
|
|
- }
|
|
- if (errorStr2)
|
|
- {
|
|
- errorString += errorStr2;
|
|
- }
|
|
- if (!errorStr1 && !errorStr2)
|
|
- {
|
|
+ if (errorStr)
|
|
+ errorString += errorStr;
|
|
+ else
|
|
errorString += "not specified.";
|
|
- }
|
|
GMX_THROW(TestException("Reference data not parsed successfully: " + path + "\n."
|
|
+ errorString + "\n"));
|
|
}
|
|
@@ -371,7 +362,7 @@
|
|
XMLElementPtr rootElement = createRootElement(&document);
|
|
createChildElements(rootElement, rootEntry);
|
|
|
|
- if (document.SaveFile(path.c_str()) != tinyxml2::XML_NO_ERROR)
|
|
+ if (document.SaveFile(path.c_str()) != tinyxml2::XML_SUCCESS)
|
|
{
|
|
GMX_THROW(TestException("Reference data saving failed in " + path));
|
|
}
|