guix/gnu/packages
Ricardo Wurmus 2596200514
gnu: r-methylkit: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1.
2021-02-11 21:33:38 +01:00
..
aux-files guile: Do not install Guile/libgc allocators for GMP. 2021-02-07 22:28:55 +01:00
patches Revert "gnu: inetutils: Update to 2.0." 2021-02-10 00:18:17 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm Revert "gnu: inetutils: Update to 2.0." 2021-02-10 00:18:17 +01:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: giac: Update to 1.6.0-47. 2021-01-22 16:21:41 +01:00
android.scm
animation.scm gnu: Add rlottie. 2021-01-31 09:22:49 +01:00
anthy.scm
antivirus.scm gnu: clamav: Update to 0.103.1. 2021-02-07 23:27:15 +01:00
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: Add jplephem 2021-02-07 10:20:52 +01:00
attr.scm
audio.scm gnu: ztoolkit-rsvg: Move dependencies to propagated-inputs. 2021-02-01 19:54:35 -05:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm gnu: autoconf: Update to 2.71. 2021-01-31 21:49:58 +01:00
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: dump: Update to 0.4b47. 2021-01-31 16:31:30 -05:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-delayedmatrixstats: Update to 1.12.3. 2021-02-11 21:33:37 +01:00
bioinformatics.scm gnu: r-methylkit: Update to 1.16.1. 2021-02-11 21:33:38 +01:00
bison.scm
bittorrent.scm Revert qt-build-system changes that were pushed to a frozen "staging" branch. 2021-01-30 18:05:42 -05:00
boost.scm
bootloaders.scm gnu: u-boot-puma-rk3399: Switch to using arm-trusted-firmware-rk3399. 2021-02-08 07:18:41 -08:00
bootstrap.scm
browser-extensions.scm gnu: uBlock Origin: Update to 1.33.2. 2021-02-03 20:35:58 +01:00
build-tools.scm
busybox.scm
c.scm
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm Revert "gnu: xorriso: Update to 1.5.4.pl02." 2021-02-10 14:21:37 -05:00
cedille.scm
certs.scm
check.scm gnu: python2-fixtures: Remove package. 2021-01-29 10:58:24 -05:00
chemistry.scm gnu: openbabel: Update to 3.1.1. 2021-02-01 12:07:01 -05:00
chez.scm
chicken.scm
chromium.scm gnu: ungoogled-chromium: Update to 88.0.4324.150-0.f7c33de [fixes CVE-2021-21148]. 2021-02-07 13:52:56 +01:00
ci.scm gnu: cuirass: Update to 0.0.1-67.23688a0. 2021-02-08 13:44:06 +01:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm gnu: Add cmake-shared. 2021-01-31 09:22:49 +01:00
cobol.scm
code.scm
commencement.scm
compression.scm gnu: lz4: Disable parallel testing. 2021-02-11 17:25:08 +08:00
compton.scm
configuration-management.scm
conky.scm
connman.scm gnu: connman: Update to 1.39 [fixes CVE-2021-{26675,26676}]. 2021-02-08 17:56:27 -05:00
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: Add range-v3. 2021-01-31 09:22:49 +01:00
cppi.scm
cran.scm gnu: r-mlr3tuning: Update to 0.6.0. 2021-02-11 01:03:26 +01:00
crates-graphics.scm gnu: rust-vecmath-1: Drop minor version from name. 2021-02-05 23:40:43 +01:00
crates-gtk.scm
crates-io.scm gnu: Remove spurious rust-scopeguard-1 package. 2021-02-05 23:44:16 +01:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
databases.scm gnu: libdbi-drivers: Disable tests that get stuck forever. 2021-02-03 18:08:11 +01:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm gnu: dpkg: Update to 1.20.7.1. 2021-02-08 10:14:04 +02:00
debug.scm
dejagnu.scm
dhall.scm
dico.scm
dictionaries.scm gnu: grammalecte: Update to 2.1.0. 2021-02-11 16:14:39 +01:00
diffoscope.scm gnu: diffoscope: Update to 165. 2021-02-07 23:26:01 -08:00
digest.scm
direct-connect.scm
disk.scm gnu: parted: Update to 3.4. 2021-02-11 16:55:12 +08:00
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm gnu: ldc-bootstrap: Update to 0.17.6. 2021-01-25 22:54:35 +02:00
dns.scm gnu: dnsmasq: Update to 2.84. 2021-01-28 20:51:30 +02:00
docbook.scm
docker.scm gnu: docker: Update to 19.03.13. 2021-02-08 03:27:42 +03:00
documentation.scm gnu: zeal: Update to 0.6.1-1.d3c5521. 2021-02-05 17:04:48 +01:00
drones.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-ebdb: Update to 0.6.22. 2021-02-11 14:27:07 +01:00
emacs.scm gnu: emacs-next-pgtk: Update to 28.0.50-1.ae18c8e. 2021-02-01 18:53:28 -05:00
embedded.scm gnu: Add python-psptool. 2021-02-08 20:15:06 +01:00
emulators.scm gnu: dolphin-emu: Update to 5.0-13178. 2021-02-10 13:36:26 -05:00
enchant.scm
engineering.scm gnu: Add emacs-scad-mode. 2021-01-29 12:09:11 +01:00
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm gnu: Add fcitx-qt5. 2021-01-31 09:22:48 +01:00
fcitx5.scm gnu: fcitx5-configtool: Update to 5.0.2. 2021-01-28 21:16:08 +02:00
figlet.scm
file-systems.scm gnu: python-dropbox: Update to 11.2.0. 2021-02-11 16:29:47 +02:00
file.scm
finance.scm gnu: python-duniterpy: Update to 0.61.0. 2021-02-11 14:50:04 +01:00
firmware.scm gnu: u-boot-puma-rk3399: Switch to using arm-trusted-firmware-rk3399. 2021-02-08 07:18:41 -08:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: Add font-cozette. 2021-02-11 17:51:50 +01:00
fontutils.scm
forth.scm
fpga.scm gnu: Add Verilator. 2021-01-28 14:55:14 +01:00
freedesktop.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: python2-renpy: Update to 7.4.2. 2021-02-07 20:25:54 +01:00
games.scm gnu: hedgewars: Fix build. 2021-02-11 11:56:09 +08:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm gnu: genimage: Use GIT-FILE-NAME. 2021-01-22 10:11:45 +01:00
geo.scm gnu: postgis: Update to 3.1.1. 2021-02-09 10:45:43 +01:00
gettext.scm gnu: Add mdpo. 2021-02-02 10:24:26 +01:00
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
glib.scm
gnome-xyz.scm gnu: Add tiramisu. 2021-02-11 18:15:26 +08:00
gnome.scm gnu: Add gnome-recipes. 2021-02-08 20:36:46 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm gnu: gnupg: Update to 2.2.27. 2021-02-08 23:50:36 +01:00
gnustep.scm
gnuzilla.scm gnu: icedove: Update to 78.7.1. 2021-02-07 18:13:59 +01:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm gnu: blender-2.79: Fix build. 2021-01-30 18:38:41 +01:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm gnu: gst-plugins-good: Fix a test failure on 32-bit systems. 2021-01-31 01:00:30 -05:00
gtk.scm gnu: guile-cairo: Update to 1.11.2. 2021-02-04 09:40:49 +01:00
guile-wm.scm
guile-xyz.scm gnu: guile-commonmark: Fix build with Guile 3.0.5. 2021-02-06 21:45:13 +01:00
guile.scm gnu: guile-json-4: Update to 4.5.2. 2021-02-08 23:50:36 +01:00
gv.scm
gxmessage.scm
hardware.scm gnu: Add tpm2-tss. 2021-01-28 18:29:01 +01:00
haskell-apps.scm gnu: git-annex: Update to 8.20210127. 2021-01-28 20:34:45 +02:00
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: catimg: Update to 2.7.0. 2021-01-24 23:58:29 +02:00
image.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
imagemagick.scm
inklingreader.scm
inkscape.scm gnu: inkscape-1.0: Update to 1.0.2. 2021-01-25 09:36:26 -05:00
installers.scm
ipfs.scm
irc.scm gnu: srain: Update to 1.1.3. 2021-02-11 10:52:07 +08:00
iso-codes.scm
jami.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia-xyz.scm gnu: Add julia-json. 2021-01-30 15:36:57 +01:00
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm gnu: libchewing: Disable parallel tests. 2021-01-31 18:00:22 +01:00
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm gnu: Add licenseheaders. 2021-01-31 17:00:29 +01:00
lighting.scm
linphone.scm
linux.scm gnu: procps: Update provided programs list in description. 2021-02-11 11:21:09 +08:00
lirc.scm
lisp-xyz.scm gnu: sbcl-cmd: Update to 20210206. 2021-02-10 12:53:26 +01:00
lisp.scm gnu: ecl: Update to 21.2.1. 2021-02-03 20:59:14 +01:00
llvm.scm
logging.scm
logo.scm
loko.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm gnu: fennel: Always run tests. 2021-01-25 11:55:40 +02:00
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-threadpoolctl. 2021-01-31 16:31:32 +02:00
magic-wormhole.scm
mail.scm gnu: mu: Update to 1.4.15. 2021-02-07 23:27:16 +01:00
make-bootstrap.scm
man.scm
markup.scm gnu: Add md4c. 2021-02-02 10:24:23 +01:00
marst.scm
mastodon.scm gnu: tootle: Update to 1.0. 2021-02-07 16:37:24 +02:00
mate.scm
maths.scm gnu: wxmaxima: Update to 21.01.0. 2021-02-09 16:28:58 -05:00
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm gnu: mc: Update to 4.8.26. 2021-02-07 23:27:15 +01:00
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: gajim-openpgp: Update to 1.3.9. 2021-02-11 16:23:47 +08:00
microcom.scm
mingw.scm gnu: Add mingw-w64-tools. 2021-02-03 10:26:22 -05:00
moe.scm
monitoring.scm gnu: Add python-pyzabbix. 2021-02-06 13:13:57 +01:00
mono.scm gnu: libgdiplus: Update to 6.0.5. 2021-01-28 20:48:55 +02:00
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: ncmpc: Update to 0.44. 2021-02-07 12:07:24 -05:00
mpi.scm
mtools.scm
multiprecision.scm gnu: libtomcrypt: Patch pkg-config file to pull libtommath. 2021-02-11 12:04:37 +02:00
music.scm gnu: musescore: Update to 3.6.2. 2021-02-11 14:32:46 +01:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: miredo: Fix creation of .pid file. 2021-02-11 17:18:15 +08:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm gnu: nim: Update to 1.4.2. 2021-02-11 11:30:49 +08:00
ninja.scm
node-xyz.scm
node.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm gnu: OpenLDAP: Update to 2.4.57 [security fixes]. 2021-02-11 15:02:53 -05:00
openpgp.scm
openstack.scm gnu: python2-git-review: Remove package. 2021-01-29 10:58:23 -05:00
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-18.88fbb69. 2021-02-10 08:26:53 +00:00
pantheon.scm
parallel.scm gnu: slurm-18.08: Update to 18.08.9. 2021-01-31 00:04:11 +02:00
pascal.scm
password-utils.scm gnu: keepassxc: Update to 2.6.4. 2021-02-01 21:42:05 +01:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: Xpdf: Update to 4.03. 2021-02-09 15:38:03 -05:00
pem.scm
pep.scm
perl-check.scm gnu: perl-test-trailingspace: Update to 0.0600. 2021-02-08 13:46:26 +02:00
perl-compression.scm
perl-web.scm
perl.scm gnu: perl-time-local: Update to 1.30. 2021-02-08 13:46:25 +02:00
perl6.scm
phabricator.scm
photo.scm
php.scm gnu: php: Disable failing tests on arm. 2021-02-09 17:09:49 +01:00
piet.scm
pkg-config.scm
plotutils.scm gnu: guile-charting: Update to commit 75f755b. 2021-02-03 12:41:29 +01:00
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm gnu: python-xyz: Move a few modules to (gnu packages python-build). 2021-01-27 08:05:42 -05:00
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm gnu: python-wheel: Update to 0.36.2 (again) 2021-01-27 18:17:33 +01:00
python-check.scm gnu: Add python-eradicate. 2021-01-25 15:57:23 -05:00
python-compression.scm
python-crypto.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
python-science.scm gnu: python-scipy: Update to 1.6.0. 2021-02-09 16:33:12 +01:00
python-web.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
python-xyz.scm gnu: Add python-crayons. 2021-02-11 17:50:16 +01:00
python.scm
qt.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
radio.scm gnu: Add direwolf. 2021-02-09 17:48:05 +01:00
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rpc.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: jekyll: Update to 4.2.0. 2021-02-09 11:11:58 +01:00
rush.scm
rust-apps.scm gnu: rust-natord-1: Drop minor version from name. 2021-02-05 23:40:32 +01:00
rust.scm
sagemath.scm
samba.scm gnu: samba: Update to 4.13.4. 2021-02-07 23:27:18 +01:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm gnu: Add ugrep. 2021-01-27 16:43:51 +01:00
security-token.scm gnu: ccid: Update to 1.4.34. 2021-02-07 23:27:18 +01:00
selinux.scm
sequoia.scm gnu: rust-dirs-2: Drop minor version from name. 2021-01-30 15:34:41 +01:00
serialization.scm
serveez.scm
shells.scm gnu: xonsh: Update to 0.9.25. 2021-02-07 23:27:17 +01:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm gnu: s6-dns: Update to 2.3.5.0. 2021-02-07 23:27:17 +01:00
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm gnu: Add python2-sphinx. 2021-02-05 23:30:43 +01:00
spice.scm
sqlite.scm
squirrel.scm
ssh.scm gnu: dropbear: Unbundle libraries. 2021-02-11 12:04:37 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-forcats: Update to 0.5.1. 2021-02-11 01:03:28 +01:00
stb.scm
stenography.scm gnu: plover: Update to 4.0.0.dev8. 2021-02-02 19:29:52 +00:00
storage.scm
suckless.scm
swig.scm
sync.scm gnu: owncloud-client: Update to 2.7.5.3180. 2021-02-07 02:38:52 +01:00
syncthing.scm gnu: syncthing-gtk: Switch source to use Debian's Python 3 port. 2021-01-29 10:58:25 -05:00
syndication.scm gnu: rust-natord-1: Drop minor version from name. 2021-02-05 23:40:32 +01:00
synergy.scm
task-management.scm gnu: taskwarrior: Update to 2.5.3. 2021-02-04 15:21:08 -06:00
tbb.scm
tcl.scm
telegram.scm gnu: telegram-desktop: Comment materialdecoration input. 2021-02-10 01:18:23 +03:00
telephony.scm
terminals.scm gnu: foot: Update to 1.6.3. 2021-02-07 23:27:16 +01:00
terraform.scm
tex.scm gnu: lyx: Update to 2.3.6.1. 2021-02-11 15:11:57 +01:00
texinfo.scm
text-editors.scm gnu: texmacs: Update to 1.99.18. 2021-02-11 15:15:23 +01:00
textutils.scm
time.scm gnu: python-arrow: Adjust test suite. 2021-02-08 09:59:54 +02:00
tls.scm
tmux.scm
tor.scm gnu: tor: Update to 0.4.4.7 [mitigates DoSes]. 2021-02-04 22:07:36 +01:00
toys.scm
tryton.scm gnu: tryton applcations and framework: Update to 5.8.2. 2021-02-08 19:47:13 +01:00
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: subversion: Update to 1.14.1 [fixes CVE-2020-17525]. 2021-02-10 21:03:32 -05:00
video.scm gnu: streamlink: Update to 2.0.0. 2021-02-09 19:45:05 +03:00
vim.scm gnu: vim: Fix test_signals test. 2021-02-11 17:12:17 +08:00
virtualization.scm gnu: python-xyz: Move a few modules to (gnu packages python-build). 2021-01-27 08:05:42 -05:00
visidata.scm gnu: visidata: Update to 2.2.1. 2021-02-11 19:55:38 +08:00
vlang.scm
vnc.scm
vpn.scm
vulkan.scm Merge branch 'staging' 2021-02-01 14:18:38 -05:00
w3m.scm
wdiff.scm
web-browsers.scm gnu: nyxt: Fix hu.dwim.defclass-star version. 2021-02-05 12:47:55 +01:00
web.scm gnu: esbuild: Update to 0.8.43. 2021-02-11 13:17:08 +02:00
webkit.scm
wget.scm
wicd.scm
wine.scm gnu: wine: Update to 6.0. 2021-01-29 12:46:19 +01:00
wireservice.scm
wm.scm
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: Add wob. 2021-02-11 20:54:04 +01:00
xfce.scm gnu: thunar: Update to 4.16.3. 2021-02-10 11:08:42 +02:00
xfig.scm
xiph.scm gnu: vorbis-tools: Update to 1.4.2. 2021-02-09 15:06:08 -05:00
xml.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
xnee.scm
xorg.scm Merge branch 'master' into staging 2021-01-25 15:40:55 -05:00
zile.scm
zwave.scm