mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-26 06:18:07 -05:00
392 lines
16 KiB
Scheme
392 lines
16 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
||
;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
|
||
;;; Copyright © 2016, 2017, 2019–2021 Tobias Geerinckx-Rice <me@tobias.gr>
|
||
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
|
||
;;; Copyright © 2019, 2020, 2022 Efraim Flashner <efraim@flashner.co.il>
|
||
;;; Copyright © 2020 Mark H Weaver <mhw@netris.org>
|
||
;;; Copyright © 2020, 2022 Marius Bakke <marius@gnu.org>
|
||
;;;
|
||
;;; This file is part of GNU Guix.
|
||
;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||
;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||
|
||
(define-module (gnu packages datastructures)
|
||
#:use-module (gnu packages)
|
||
#:use-module (gnu packages autotools)
|
||
#:use-module (gnu packages boost)
|
||
#:use-module (gnu packages perl)
|
||
#:use-module ((guix licenses) #:prefix license:)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix gexp)
|
||
#:use-module (guix download)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix build-system cmake)
|
||
#:use-module (guix build-system gnu)
|
||
#:use-module (guix build-system meson))
|
||
|
||
(define-public gdsl
|
||
(package
|
||
(name "gdsl")
|
||
(version "1.8")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://example.org") ;only hosted on Software Heritage
|
||
(commit "6adb53be8b8f9f2e4bbfc92d357eedeefb4c7430")))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0a52g12d9sf9hhcyvwfd7xdazj2a9i9jh97cnlqf2ymvwnvjk1g0"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://web.archive.org/web/20170502005430/http://home.gna.org/gdsl/")
|
||
(synopsis "Generic data structures library")
|
||
(description "The Generic Data Structures Library (GDSL) is a collection
|
||
of routines for generic data structures manipulation. It is a re-entrant
|
||
library fully written from scratch in pure ANSI C. It is designed to offer
|
||
for C programmers common data structures with powerful algorithms, and hidden
|
||
implementation. Available structures are lists, queues, stacks, hash tables,
|
||
binary trees, binary search trees, red-black trees, 2D arrays, permutations
|
||
and heaps.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public marisa
|
||
(package
|
||
(name "marisa")
|
||
(version "0.2.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/s-yata/marisa-trie/files/"
|
||
"4832504/marisa-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1pk6wmi28pa8srb4szybrwfn71jldb61c5vgxsiayxcyg1ya4qqh"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list autoconf automake libtool))
|
||
(home-page "https://github.com/s-yata/marisa-trie")
|
||
(synopsis "Trie data structure C++ library")
|
||
(description "@acronym{MARISA, Matching Algorithm with Recursively
|
||
Implemented StorAge} is a static and space-efficient trie data structure C++
|
||
library.")
|
||
|
||
;; Dual-licensed, according to docs/readme.en.html (source files lack
|
||
;; copyright/license headers.)
|
||
(license (list license:bsd-2 license:lgpl2.1+))))
|
||
|
||
(define-public sparsehash
|
||
(package
|
||
(name "sparsehash")
|
||
(version "2.0.4")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/sparsehash/sparsehash")
|
||
(commit (string-append name "-" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1pf1cjvcjdmb9cd6gcazz64x0cd2ndpwh6ql2hqpypjv725xwxy7"))))
|
||
(build-system gnu-build-system)
|
||
(synopsis "Memory-efficient hashtable implementations")
|
||
(description
|
||
"This library contains several hash-map implementations, similar in API
|
||
to SGI's @code{hash_map} class, but with different performance
|
||
characteristics. @code{sparse_hash_map} uses very little space overhead, 1-2
|
||
bits per entry. @code{dense_hash_map} is very fast, particularly on lookup.
|
||
@code{sparse_hash_set} and @code{dense_hash_set} are the set versions of these
|
||
routines. All these implementation use a hashtable with internal quadratic
|
||
probing. This method is space-efficient -- there is no pointer overhead --
|
||
and time-efficient for good hash functions.")
|
||
(home-page "https://github.com/sparsehash/sparsehash")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public ssdeep
|
||
(package
|
||
(name "ssdeep")
|
||
(version "2.14.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/ssdeep-project/ssdeep/"
|
||
"releases/download/release-" version "/"
|
||
"ssdeep-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "04qkjc6kksxkv7xbnk32rwmf3a8czdv2vvrdzfs0kw06h73snbpz"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list "--disable-static")))
|
||
(home-page "https://ssdeep-project.github.io")
|
||
(synopsis "Context-triggered piecewise hashing algorithm")
|
||
(description "ssdeep computes and matches context triggered piecewise
|
||
hashes (CTPH), also called fuzzy checksums. It can identify similar files
|
||
that have sequences of identical bytes in the same order, even though bytes
|
||
in between these sequences may be different in both content and length.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public libcuckoo
|
||
(package
|
||
(name "libcuckoo")
|
||
(version "0.3.1")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/efficient/libcuckoo")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0h9yhpkhk813dk66y6bs2csybw3pbpfnp3cakr2xism02vjwy19l"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list #:configure-flags #~'("-DBUILD_TESTS=1")))
|
||
(home-page "https://efficient.github.io/libcuckoo/")
|
||
(synopsis "Concurrent hash table")
|
||
(description
|
||
"@code{libcuckoo} provides a high-performance, compact hash table that
|
||
allows multiple concurrent reader and writer threads.")
|
||
(license license:asl2.0)))
|
||
|
||
(define-public liburcu
|
||
(package
|
||
(name "liburcu")
|
||
(version "0.13.1")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.lttng.org/files/urcu/"
|
||
"userspace-rcu-" version ".tar.bz2"))
|
||
(sha256
|
||
(base32
|
||
"10rh6v9j13622cjlzx31cfpghjy0kqkvn6pb42whwwcg5cyz64rj"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list perl)) ; for tests
|
||
(home-page "https://liburcu.org/")
|
||
(synopsis "User-space RCU data synchronisation library")
|
||
(description "liburcu is a user-space @dfn{Read-Copy-Update} (RCU) data
|
||
synchronisation library. It provides read-side access that scales linearly
|
||
with the number of cores. liburcu-cds provides efficient data structures
|
||
based on RCU and lock-free algorithms. These structures include hash tables,
|
||
queues, stacks, and doubly-linked lists.")
|
||
(license (list license:lgpl2.1 license:expat))))
|
||
|
||
(define-public uthash
|
||
(package
|
||
(name "uthash")
|
||
(version "2.1.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/troydhanson/uthash")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0k80bjbb6ss5wpmfmfji6xbyjm990hg9kcshwwnhdnh73vxkcd1m"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list perl))
|
||
(arguments
|
||
`(#:make-flags
|
||
(list "CC=gcc")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(delete 'configure) ; nothing to configure
|
||
(delete 'build) ; nothing to build
|
||
(replace 'check
|
||
(lambda* (#:key make-flags #:allow-other-keys)
|
||
(with-directory-excursion "tests"
|
||
(apply invoke "make" make-flags))))
|
||
(replace 'install
|
||
;; There is no top-level Makefile to do this for us.
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((out (assoc-ref outputs "out"))
|
||
(doc (string-append out "/share/doc/" ,name "-" ,version))
|
||
(include (string-append out "/include")))
|
||
;; Don't install HTML files: they're just the below .txt files
|
||
;; dolled up, can be stale, and regeneration requires asciidoc.
|
||
(for-each (λ (file) (install-file file doc))
|
||
(find-files "doc" "\\.txt$"))
|
||
(for-each (λ (file) (install-file file include))
|
||
(find-files "src" "\\.h$"))
|
||
#t))))))
|
||
(home-page "https://troydhanson.github.io/uthash/")
|
||
(synopsis
|
||
"Hash tables, lists, and other data structures implemented as C macros")
|
||
(description
|
||
"uthash implements a hash table and a few other basic data structures
|
||
as C preprocessor macros. It aims to be minimalistic and efficient: it's
|
||
around 1,000 lines of code which, being macros, inline automatically.
|
||
|
||
Unlike function calls with fixed prototypes, macros operate on untyped
|
||
arguments. Thus, they are able to work with any type of structure and key.
|
||
Any C structure can be stored in a hash table by adding @code{UT_hash_handle}
|
||
to the structure and choosing one or more fields to act as the key.")
|
||
(license license:bsd-2)))
|
||
|
||
(define-public sdsl-lite
|
||
(package
|
||
(name "sdsl-lite")
|
||
(version "2.1.1")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/simongog/sdsl-lite/"
|
||
"releases/download/v" version "/"
|
||
"sdsl-lite-" version
|
||
".tar.gz.offline.install.gz"))
|
||
(sha256
|
||
(base32
|
||
"1v86ivv3mmdy802i9xkjpxb4cggj3s27wb19ja4sw1klnivjj69g"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
(delete-file-recursively "external") #t))
|
||
(patches
|
||
(list (origin
|
||
(method url-fetch)
|
||
(uri "https://salsa.debian.org/science-team/libsdsl/raw/debian/2.1.1+dfsg-2/debian/patches/0001-Patch-cmake-files.patch")
|
||
(file-name "sdsl-lite-dont-use-bundled-libraries.patch")
|
||
(sha256
|
||
(base32
|
||
"0m542xpys54bni29zibgrfpgpd0zgyny4h131virxsanixsbz52z")))))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'install 'install-static-library
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(copy-file "lib/libsdsl_static.a"
|
||
(string-append out "/lib/libsdsl.a")))
|
||
#t))
|
||
(add-after 'install 'install-pkgconfig-file
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((out (assoc-ref outputs "out"))
|
||
(lib (string-append out "/lib")))
|
||
(mkdir-p (string-append lib "/pkgconfig"))
|
||
(with-output-to-file (string-append lib "/pkgconfig/sdsl-lite.pc")
|
||
(lambda _
|
||
(format #t "prefix=~a~@
|
||
exec_prefix=${prefix}~@
|
||
libdir=${exec_prefix}/lib~@
|
||
includedir=${prefix}/include~@
|
||
~@
|
||
~@
|
||
Name: sdsl~@
|
||
Version: ~a~@
|
||
Description: SDSL: Succinct Data Structure Library~@
|
||
Libs: -L${libdir} -lsdsl -ldivsufsort -ldivsufsort64~@
|
||
Cflags: -I${includedir}~%"
|
||
out ,version)))
|
||
#t))))))
|
||
(propagated-inputs
|
||
(list libdivsufsort))
|
||
(home-page "https://github.com/simongog/sdsl-lite")
|
||
(synopsis "Succinct data structure library")
|
||
(description "The Succinct Data Structure Library (SDSL) is a powerful and
|
||
flexible C++11 library implementing succinct data structures. In total, the
|
||
library contains the highlights of 40 research publications. Succinct data
|
||
structures can represent an object (such as a bitvector or a tree) in space
|
||
close to the information-theoretic lower bound of the object while supporting
|
||
operations of the original object efficiently. The theoretical time
|
||
complexity of an operation performed on the classical data structure and the
|
||
equivalent succinct data structure are (most of the time) identical.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public tllist
|
||
(package
|
||
(name "tllist")
|
||
(version "1.0.5")
|
||
(home-page "https://codeberg.org/dnkl/tllist")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference (url home-page) (commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"061mkg6hc9x89zya3bw18ymxlzd8fbhjipxpva8x01lh2vp1d4f0"))))
|
||
(build-system meson-build-system)
|
||
(synopsis "Typed link list for C")
|
||
(description
|
||
"@code{tllist} is a @dfn{typed linked list} C header file only library
|
||
implemented using pre-processor macros. It supports primitive data types as
|
||
well as aggregated ones such as structs, enums and unions.")
|
||
(license license:expat)))
|
||
|
||
(define-public libdivsufsort
|
||
(package
|
||
(name "libdivsufsort")
|
||
(version "2.0.1")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/y-256/libdivsufsort")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; there are no tests
|
||
#:configure-flags
|
||
;; Needed for rapmap and sailfish.
|
||
'("-DBUILD_DIVSUFSORT64=ON")))
|
||
(home-page "https://github.com/y-256/libdivsufsort")
|
||
(synopsis "Lightweight suffix-sorting library")
|
||
(description "libdivsufsort is a software library that implements a
|
||
lightweight suffix array construction algorithm. This library provides a
|
||
simple and an efficient C API to construct a suffix array and a
|
||
Burrows-Wheeler transformed string from a given string over a constant-size
|
||
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
|
||
bytes of memory space, where n is the length of the string.")
|
||
(license license:expat)))
|
||
|
||
(define-public robin-map
|
||
(package
|
||
(name "robin-map")
|
||
(version "0.6.3")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/Tessil/robin-map")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1li70vwsksva9c4yly90hjafgqfixi1g6d52qq9p6r60vqc4pkjj"))))
|
||
(build-system cmake-build-system)
|
||
(native-inputs
|
||
(list boost)) ; needed for tests
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda _
|
||
(mkdir "tests")
|
||
(with-directory-excursion "tests"
|
||
(invoke "cmake" "../../source/tests")
|
||
(invoke "cmake" "--build" ".")
|
||
(invoke "./tsl_robin_map_tests")))))))
|
||
(home-page "https://github.com/Tessil/robin-map")
|
||
(synopsis "C++ implementation of a fast hash map and hash set")
|
||
(description "The robin-map library is a C++ implementation of a fast hash
|
||
map and hash set using open-addressing and linear robin hood hashing with
|
||
backward shift deletion to resolve collisions.
|
||
|
||
Four classes are provided: tsl::robin_map, tsl::robin_set, tsl::robin_pg_map
|
||
and tsl::robin_pg_set. The first two are faster and use a power of two growth
|
||
policy, the last two use a prime growth policy instead and are able to cope
|
||
better with a poor hash function.")
|
||
(license license:expat)))
|