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183ce98849
* gnu/packages/bioconductor.scm (r-regioner): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
72 lines
2.6 KiB
Scheme
72 lines
2.6 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2018 Roel Janssen <roel@gnu.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages bioconductor)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix build-system r)
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#:use-module (gnu packages)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages bioinformatics))
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(define-public r-hpar
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(package
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(name "r-hpar")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "hpar" version))
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(sha256
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(base32
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"0s5v79mgxdx862v1jrdf5pdap81nz5vjx25ni8s3sl97ldckf6j8"))))
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(build-system r-build-system)
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(home-page "https://bioconductor.org/packages/hpar/")
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(synopsis "Human Protein Atlas in R")
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(description "This package provides a simple interface to and data from
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the Human Protein Atlas project.")
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(license license:artistic2.0)))
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(define-public r-regioner
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(package
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(name "r-regioner")
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(version "1.10.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "regioneR" version))
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(sha256
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(base32
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"1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp"))))
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(properties `((upstream-name . "regioneR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-memoise" ,r-memoise)
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("r-genomicranges" ,r-genomicranges)
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("r-bsgenome" ,r-bsgenome)
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("r-rtracklayer" ,r-rtracklayer)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-iranges" ,r-iranges)))
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(home-page "https://bioconductor.org/packages/regioneR/")
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(synopsis "Association analysis of genomic regions")
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(description "This package offers a statistical framework based on
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customizable permutation tests to assess the association between genomic
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region sets and other genomic features.")
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(license license:artistic2.0)))
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