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96c4621056
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools, plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'. * gnu/packages/check.scm (catch-framework): Likewise. * gnu/packages/code.scm (global): Likewise. * gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools): Likewise. * gnu/packages/engineering.scm (fastcap, fasthenry): Likewise. * gnu/packages/gnuzilla.scm (nss): Likewise. * gnu/packages/guile.scm (guile-minikanren): Likewise. * gnu/packages/java.scm (swt): Likewise. * gnu/packages/make-bootstrap.scm (%static-binaries): Likewise. * gnu/packages/maths.scm (lpsolve): Likewise. * gnu/packages/mp3.scm (mpc123): Likewise. * gnu/packages/ninja.scm (ninja): Likewise. * gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise. * gnu/packages/screen.scm (dtach): Likewise. * gnu/packages/synergy.scm (synergy): Likewise. * gnu/packages/textutils.scm (utf8proc): Likewise. * gnu/packages/version-control.scm (git-test-sequence): Likewise. * gnu/packages/wicd.scm (wicd): Likewise.
588 lines
23 KiB
Scheme
588 lines
23 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2015 Christopher Allan Webber <cwebber@dustycloud.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages guile)
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#:use-module (guix licenses)
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#:use-module (gnu packages)
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#:use-module (gnu packages bash)
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#:use-module (gnu packages bdw-gc)
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#:use-module (gnu packages gawk)
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#:use-module (gnu packages gperf)
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#:use-module (gnu packages libffi)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages libunistring)
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#:use-module (gnu packages m4)
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#:use-module (gnu packages multiprecision)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages ncurses)
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#:use-module (gnu packages ed)
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#:use-module (gnu packages base)
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#:use-module (gnu packages texinfo)
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#:use-module (gnu packages gettext)
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#:use-module (gnu packages gdbm)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system trivial)
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#:use-module (guix utils)
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#:use-module (ice-9 match))
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;;; Commentary:
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;;;
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;;; GNU Guile, and modules and extensions.
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;;;
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;;; Code:
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(define-public guile-1.8
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(package
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(name "guile")
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(version "1.8.8")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/guile/guile-" version
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".tar.gz"))
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(sha256
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(base32
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"0l200a0v7h8bh0cwz6v7hc13ds39cgqsmfrks55b1rbj5vniyiy3"))
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(patches (list (search-patch "guile-1.8-cpp-4.5.patch")))))
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(build-system gnu-build-system)
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(arguments '(#:configure-flags '("--disable-error-on-warning")
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;; Insert a phase before `configure' to patch things up.
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#:phases (alist-cons-before
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'configure
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'patch-stuff
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(lambda* (#:key outputs #:allow-other-keys)
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;; Add a call to `lt_dladdsearchdir' so that
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;; `libguile-readline.so' & co. are in the
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;; loader's search path.
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(substitute* "libguile/dynl.c"
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(("lt_dlinit.*$" match)
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(format #f
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" ~a~% lt_dladdsearchdir(\"~a/lib\");~%"
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match
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(assoc-ref outputs "out"))))
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;; The usual /bin/sh...
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(substitute* "ice-9/popen.scm"
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(("/bin/sh") (which "sh"))))
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%standard-phases)))
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(inputs `(("gawk" ,gawk)
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("readline" ,readline)))
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;; Since `guile-1.8.pc' has "Libs: ... -lgmp -lltdl", these must be
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;; propagated.
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(propagated-inputs `(("gmp" ,gmp)
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("libltdl" ,libltdl)))
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;; When cross-compiling, a native version of Guile itself is needed.
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(self-native-input? #t)
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(native-search-paths
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(list (search-path-specification
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(variable "GUILE_LOAD_PATH")
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(files '("share/guile/site")))))
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(synopsis "Scheme implementation intended especially for extensions")
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(description
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"Guile is the GNU Ubiquitous Intelligent Language for Extensions, the
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official extension language of the GNU system. It is an implementation of
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the Scheme language which can be easily embedded in other applications to
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provide a convenient means of extending the functionality of the application
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without requiring the source code to be rewritten.")
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(home-page "http://www.gnu.org/software/guile/")
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(license lgpl2.0+)))
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(define-public guile-2.0
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(package
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(name "guile")
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(version "2.0.11")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/guile/guile-" version
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".tar.xz"))
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(sha256
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(base32
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"1qh3j7308qvsjgwf7h94yqgckpbgz2k3yqdkzsyhqcafvfka9l5f"))
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(patches (list (search-patch "guile-arm-fixes.patch")))))
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(build-system gnu-build-system)
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(native-inputs `(("pkgconfig" ,pkg-config)))
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(inputs `(("libffi" ,libffi)
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("readline" ,readline)
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("bash" ,bash)))
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(propagated-inputs
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`( ;; These ones aren't normally needed here, but since `libguile-2.0.la'
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;; reads `-lltdl -lunistring', adding them here will add the needed
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;; `-L' flags. As for why the `.la' file lacks the `-L' flags, see
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;; <http://thread.gmane.org/gmane.comp.lib.gnulib.bugs/18903>.
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("libunistring" ,libunistring)
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;; Depend on LIBLTDL, not LIBTOOL. That way, we avoid some the extra
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;; dependencies that LIBTOOL has, which is helpful during bootstrap.
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("libltdl" ,libltdl)
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;; The headers and/or `guile-2.0.pc' refer to these packages, so they
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;; must be propagated.
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("bdw-gc" ,libgc)
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("gmp" ,gmp)))
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(self-native-input? #t)
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(outputs '("out" "debug"))
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(arguments
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`(#:phases (alist-cons-before
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'configure 'pre-configure
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(lambda* (#:key inputs #:allow-other-keys)
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;; Tell (ice-9 popen) the file name of Bash.
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(let ((bash (assoc-ref inputs "bash")))
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(substitute* "module/ice-9/popen.scm"
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(("/bin/sh")
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(string-append bash "/bin/bash")))))
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%standard-phases)))
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(native-search-paths
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(list (search-path-specification
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(variable "GUILE_LOAD_PATH")
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(files '("share/guile/site/2.0")))
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(search-path-specification
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(variable "GUILE_LOAD_COMPILED_PATH")
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(files '("share/guile/site/2.0")))))
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(synopsis "Scheme implementation intended especially for extensions")
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(description
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"Guile is the GNU Ubiquitous Intelligent Language for Extensions, the
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official extension language of the GNU system. It is an implementation of
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the Scheme language which can be easily embedded in other applications to
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provide a convenient means of extending the functionality of the application
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without requiring the source code to be rewritten.")
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(home-page "http://www.gnu.org/software/guile/")
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(license lgpl3+)))
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(define-public guile-2.0/fixed
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;; A package of Guile 2.0 that's rarely changed. It is the one used
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;; in the `base' module, and thus changing it entails a full rebuild.
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guile-2.0)
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(define-public guile-for-guile-emacs
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(package (inherit guile-2.0)
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(name "guile-for-guile-emacs")
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(version "20150510.d8d9a8d")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "git://git.hcoop.net/git/bpt/guile.git")
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(commit "d8d9a8da05ec876acba81a559798eb5eeceb5a17")))
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(sha256
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(base32
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"00sprsshy16y8pxjy126hr2adqcvvzzz96hjyjwgg8swva1qh6b0"))))
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(arguments
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(substitute-keyword-arguments `(;; Tests aren't passing for now.
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;; Obviously we should re-enable this!
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#:tests? #f
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,@(package-arguments guile-2.0))
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((#:phases phases)
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`(modify-phases ,phases
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(add-after 'unpack 'autogen
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(lambda _
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(zero? (system* "sh" "autogen.sh"))))
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(add-before 'autogen 'patch-/bin/sh
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(lambda _
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(substitute* "build-aux/git-version-gen"
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(("#!/bin/sh") (string-append "#!" (which "sh"))))
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#t))))))
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(native-inputs
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`(("autoconf" ,autoconf)
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("automake" ,automake)
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("libtool" ,libtool)
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("flex" ,flex)
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("texinfo" ,texinfo)
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("gettext" ,gnu-gettext)
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,@(package-native-inputs guile-2.0)))))
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;;;
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;;; Extensions.
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;;;
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(define-public guile-reader
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(package
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(name "guile-reader")
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(version "0.6.1")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://savannah/guile-reader/guile-reader-"
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version ".tar.gz"))
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(sha256
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(base32
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"020wz5w8z6g79nbqifg2n496wxwkcjzh8xizpv6mz0hczpl155ma"))))
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(build-system gnu-build-system)
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(native-inputs `(("pkgconfig" ,pkg-config)
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("gperf" ,gperf)))
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(inputs `(("guile" ,guile-2.0)))
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(arguments `(#:configure-flags
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(let ((out (assoc-ref %outputs "out")))
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(list (string-append "--with-guilemoduledir="
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out "/share/guile/site/2.0")))))
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(synopsis "Framework for building readers for GNU Guile")
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(description
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"Guile-Reader is a simple framework for building readers for GNU Guile.
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The idea is to make it easy to build procedures that extend Guile’s read
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procedure. Readers supporting various syntax variants can easily be written,
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possibly by re-using existing “token readers” of a standard Scheme
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readers. For example, it is used to implement Skribilo’s R5RS-derived
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document syntax.
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Guile-Reader’s approach is similar to Common Lisp’s “read table”, but
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hopefully more powerful and flexible (for instance, one may instantiate as
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many readers as needed).")
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(home-page "http://www.nongnu.org/guile-reader/")
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(license gpl3+)))
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(define-public guile-ncurses
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(package
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(name "guile-ncurses")
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(version "1.6")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/guile-ncurses/guile-ncurses-"
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version ".tar.gz"))
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(sha256
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(base32
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"0wmk681zzi1wxw543r2s2r84ndnzxp69kr7pc01aw4l55hg7jn73"))))
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(build-system gnu-build-system)
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(inputs `(("ncurses" ,ncurses)
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("guile" ,guile-2.0)))
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(arguments
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'(#:configure-flags (list "--with-ncursesw" ; Unicode support
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(string-append "--with-guilesitedir="
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(assoc-ref %outputs "out")
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"/share/guile/site/2.0"))
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#:phases (alist-cons-before
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'check 'change-locale
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(lambda _
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;; Use the locale that's actually available in the build
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;; environment.
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(substitute* "test/f009_form_wide.test"
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(("en_US\\.utf8")
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"en_US.UTF-8")))
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(alist-cons-after
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'install 'post-install
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(dir (string-append out "/share/guile/site/"))
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(files (find-files dir ".scm")))
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(substitute* files
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(("\"libguile-ncurses\"")
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(format #f "\"~a/lib/libguile-ncurses\""
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out)))))
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%standard-phases))))
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(home-page "http://www.gnu.org/software/guile-ncurses/")
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(synopsis "Guile bindings to ncurses")
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(description
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"guile-ncurses provides Guile language bindings for the ncurses
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library.")
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(license lgpl3+)))
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(define-public mcron
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(package
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(name "mcron")
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(version "1.0.8")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/mcron/mcron-"
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version ".tar.gz"))
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(sha256
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(base32
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"0zparwgf01jgl1x53ik71ghabldq6zz18ha4dscps1i0qrzgap1b"))
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(patches (list (search-patch "mcron-install.patch")))))
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(build-system gnu-build-system)
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(native-inputs `(("pkg-config" ,pkg-config)))
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(inputs `(("ed" ,ed) ("which" ,which) ("guile" ,guile-2.0)))
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(home-page "http://www.gnu.org/software/mcron/")
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(synopsis "Run jobs at scheduled times")
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(description
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"GNU Mcron is a complete replacement for Vixie cron. It is used to run
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tasks on a schedule, such as every hour or every Monday. Mcron is written in
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Guile, so its configuration can be written in Scheme; the original cron
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format is also supported.")
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(license gpl3+)))
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(define-public guile-lib
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(package
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(name "guile-lib")
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(version "0.2.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://savannah/guile-lib/guile-lib-"
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version ".tar.gz"))
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(sha256
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(base32
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"1f9n2b5b5r75lzjinyk6zp6g20g60msa0jpfrk5hhg4j8cy0ih4b"))))
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(build-system gnu-build-system)
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(arguments
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'(#:phases (alist-cons-before
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'configure 'patch-module-dir
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(lambda _
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(substitute* "src/Makefile.in"
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(("^moddir[[:blank:]]*=[[:blank:]]*([[:graph:]]+)" _ rhs)
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(string-append "moddir = " rhs "/2.0\n"))))
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%standard-phases)))
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(inputs `(("guile" ,guile-2.0)))
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(home-page "http://www.nongnu.org/guile-lib/")
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(synopsis "Collection of useful Guile Scheme modules")
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(description
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"Guile-Lib is intended as an accumulation place for pure-scheme Guile
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modules, allowing for people to cooperate integrating their generic Guile
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modules into a coherent library. Think \"a down-scaled, limited-scope CPAN
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for Guile\".")
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;; The whole is under GPLv3+, but some modules are under laxer
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;; distribution terms such as LGPL and public domain. See `COPYING' for
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;; details.
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(license gpl3+)))
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(define-public guile-json
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(package
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(name "guile-json")
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(version "0.4.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://savannah/guile-json/guile-json-"
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version ".tar.gz"))
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(sha256
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||
(base32
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"0v06272rw4ycwzssjf3fzpk2vhpslvl55hz94q80vc6f74j0d5h6"))
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(modules '((guix build utils)))
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(snippet
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;; Make sure everything goes under .../site/2.0, like Guile's
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;; search paths expects.
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'(substitute* '("Makefile.in" "json/Makefile.in")
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(("moddir =.*/share/guile/site" all)
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(string-append all "/2.0"))))))
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(build-system gnu-build-system)
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(native-inputs `(("guile" ,guile-2.0)))
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(home-page "http://savannah.nongnu.org/projects/guile-json/")
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(synopsis "JSON module for Guile")
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(description
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"Guile-json supports parsing and building JSON documents according to the
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http:://json.org specification. These are the main features:
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- Strictly complies to http://json.org specification.
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- Build JSON documents programmatically via macros.
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- Unicode support for strings.
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- Allows JSON pretty printing.")
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(license lgpl3+)))
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(define-public guile-minikanren
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(package
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(name "guile-minikanren")
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(version "20150424.e844d85")
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(source (origin
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(method git-fetch)
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||
(uri (git-reference
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(url "https://github.com/ijp/minikanren.git")
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(commit "e844d85512f8c055d3f96143ee506007389a25e3")))
|
||
(sha256
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||
(base32
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"0r50jlpzi940jlmxyy3ddqqwmj5r12gb4bcv0ssini9v8km13xz6"))))
|
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(build-system trivial-build-system)
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||
(arguments
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`(#:modules
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||
((guix build utils)
|
||
(ice-9 match))
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#:builder
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||
(begin
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||
(use-modules (guix build utils)
|
||
(ice-9 match))
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(let* ((out (assoc-ref %outputs "out"))
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(module-dir (string-append out "/share/guile/site/2.0"))
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(source (assoc-ref %build-inputs "source"))
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(doc (string-append out "/share/doc/guile-minikanren"))
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(scm-files '("minikanren.scm"
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"minikanren/mkextraforms.scm"
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"minikanren/mkprelude.scm"
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"minikanren/mk.scm"))
|
||
(guild (string-append (assoc-ref %build-inputs "guile")
|
||
"/bin/guild")))
|
||
;; Make installation directories.
|
||
(mkdir-p (string-append module-dir "/minikanren"))
|
||
(mkdir-p doc)
|
||
|
||
;; Compile .scm files and install.
|
||
(chdir source)
|
||
(setenv "GUILE_AUTO_COMPILE" "0")
|
||
(for-each (lambda (file)
|
||
(let* ((dest-file (string-append module-dir "/"
|
||
file ".scm"))
|
||
(go-file (match (string-split file #\.)
|
||
((base _)
|
||
(string-append module-dir "/"
|
||
base ".go")))))
|
||
;; Install source module.
|
||
(copy-file file dest-file)
|
||
;; Install compiled module.
|
||
(unless (zero? (system* guild "compile"
|
||
"-L" source
|
||
"-o" go-file
|
||
file))
|
||
(error (format #f "Failed to compile ~s to ~s!"
|
||
file go-file)))))
|
||
scm-files)
|
||
|
||
;; Also copy over the README.
|
||
(install-file "README.org" doc)
|
||
#t))))
|
||
(inputs
|
||
`(("guile" ,guile-2.0)))
|
||
(home-page "https://github.com/ijp/minikanren")
|
||
(synopsis "MiniKanren declarative logic system, packaged for Guile")
|
||
(description
|
||
"MiniKanren is a relational programming extension to the Scheme
|
||
programming Language, written as a smaller version of Kanren suitable for
|
||
pedagogical purposes. It is featured in the book, The Reasoned Schemer,
|
||
written by Dan Friedman, William Byrd, and Oleg Kiselyov.
|
||
|
||
This is Ian Price's r6rs packaged version of miniKanren, which deviates
|
||
slightly from miniKanren mainline.
|
||
|
||
See http://minikanren.org/ for more on miniKanren generally.")
|
||
(license expat)))
|
||
|
||
|
||
;; There are two guile-gdbm packages, one using the FFI and one with
|
||
;; direct C bindings, hence the verbose name.
|
||
|
||
(define-public guile-gdbm-ffi
|
||
(package
|
||
(name "guile-gdbm-ffi")
|
||
(version "20120209.fa1d5b6")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/ijp/guile-gdbm.git")
|
||
(commit "fa1d5b6231d0e4d096687b378c025f2148c5f246")))
|
||
(sha256
|
||
(base32
|
||
"1j8wrsw7v9w6qkl47xz0rdikg50v16nn6kbs3lgzcymjzpa7babj"))))
|
||
(build-system trivial-build-system)
|
||
(arguments
|
||
`(#:modules
|
||
((guix build utils))
|
||
#:builder
|
||
(begin
|
||
(use-modules (guix build utils)
|
||
(system base compile))
|
||
|
||
(let* ((out (assoc-ref %outputs "out"))
|
||
(module-dir (string-append out "/share/guile/site/2.0"))
|
||
(source (assoc-ref %build-inputs "source"))
|
||
(doc (string-append out "/share/doc"))
|
||
(guild (string-append (assoc-ref %build-inputs "guile")
|
||
"/bin/guild"))
|
||
(gdbm.scm-dest
|
||
(string-append module-dir "/gdbm.scm"))
|
||
(gdbm.go-dest
|
||
(string-append module-dir "/gdbm.go")))
|
||
;; Make installation directories.
|
||
(mkdir-p module-dir)
|
||
(mkdir-p doc)
|
||
|
||
;; Switch directory for compiling and installing
|
||
(chdir source)
|
||
|
||
;; copy the source
|
||
(copy-file "gdbm.scm" gdbm.scm-dest)
|
||
|
||
;; Patch the FFI
|
||
(substitute* gdbm.scm-dest
|
||
(("\\(dynamic-link \"libgdbm\"\\)")
|
||
(format #f "(dynamic-link \"~a/lib/libgdbm.so\")"
|
||
(assoc-ref %build-inputs "gdbm"))))
|
||
|
||
;; compile to the destination
|
||
(compile-file gdbm.scm-dest
|
||
#:output-file gdbm.go-dest)))))
|
||
(inputs
|
||
`(("guile" ,guile-2.0)))
|
||
(propagated-inputs
|
||
`(("gdbm" ,gdbm)))
|
||
(home-page "https://github.com/ijp/guile-gdbm")
|
||
(synopsis "Guile bindings to the GDBM library via Guile's FFI")
|
||
(description
|
||
"Guile bindings to the GDBM key-value storage system, using
|
||
Guile's foreign function interface.")
|
||
(license gpl3+)))
|
||
|
||
(define-public haunt
|
||
(package
|
||
(name "haunt")
|
||
(version "0.1")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "http://files.dthompson.us/haunt/haunt-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"15q1qwjnay7k90ppqrzqsmikvwyj61mjvf1zahyd9gm4vi2fgb3x"))))
|
||
(build-system gnu-build-system)
|
||
(inputs
|
||
`(("guile" ,guile-2.0)))
|
||
(synopsis "Functional static site generator")
|
||
(description "Haunt is a static site generator written in Guile
|
||
Scheme. Haunt features a functional build system and an extensible
|
||
interface for reading articles in any format.")
|
||
(home-page "http://haunt.dthompson.us")
|
||
(license gpl3+)))
|
||
|
||
(define-public guile-redis
|
||
(package
|
||
(name "guile-redis")
|
||
(version "0.1.0")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://savannah/guile-redis/guile-redis-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0vx6if6b4r3kwx64vzbs6vpc0cpcr85x11w9vkzq27gw8n7isv56"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
;; Make sure everything goes under .../site/2.0, like Guile's
|
||
;; search paths expects.
|
||
'(substitute* '("Makefile.in"
|
||
"redis/Makefile.in"
|
||
"redis/commands/Makefile.in")
|
||
(("moddir =.*/share/guile/site" all)
|
||
(string-append all "/2.0"))))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
`(("guile" ,guile-2.0)))
|
||
(home-page "http://savannah.nongnu.org/projects/guile-redis/")
|
||
(synopsis "Redis client library for Guile")
|
||
(description "Guile-redis provides a Scheme interface to the Redis
|
||
key-value cache and store.")
|
||
(license lgpl3+)))
|
||
|
||
;;; guile.scm ends here
|