guix/gnu/packages
Jean-Baptiste Volatier 3af351a7de
build-system/julia: Enable Julia Pkg to find installed packages.
Julia's built-in package manager (Pkg) looks for packages in
JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string
encoding package UUID and SHA1 of files.  The link-depot phase creates
a link at the correct location to allow Pkg to find packages that were
already installed by Guix.

* guix/build/julia-build-system.scm (link-depot): New phase.
(%package-path): Modified package path from packages/ to loadpath/.
(project.toml->uuid): New procedure, retrive package uuid from TOML file.
(precompile, check): Adjust to the change in paths.
(%standard-phases): Add link-depot phase.
(julia-build): Add julia-package-uuid keyword.
* guix/build-system/julia.scm (julia-build): Also use the
julia-package-uuid keyword.
* gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll,
julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll,
julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll,
julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll,
julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll,
julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll,
julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll,
julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll,
julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll,
julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll,
julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll,
julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll,
julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll,
julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll,
julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll,
julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll,
julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll,
julia-xorg-libxfixes-jll, julia-xorg-libxi-jll,
julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll,
julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll,
julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll,
julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll,
julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll,
julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll)
[argument]: Adjust the order of the phases to the change in the
julia-build-system.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus,
julia-dataframes, julia-datavalues, julia-distances, julia-documenter,
julia-dualnumbers, julia-ellipsisnotation, julia-expronicon,
julia-fileio, julia-fixedpointnumbers, julia-functionwrappers,
julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur,
julia-geometrybasics, julia-imagemagick, julia-infinity,
julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib,
julia-optimtestproblems, julia-orderedcollections, julia-prettytables,
julia-pycall, julia-quadmath, julia-safetests, julia-stackviews)
[arguments]: Correct paths to reflect change of %package-path modify
order of phases as link-depot needs to run on an unmodified src
directory add package-name-uuid keyword argument to packages without
Project.toml file.
* gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to
reflect change of %package-path modify order of phases as link-depot
needs to run on an unmodified src directory.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-16 14:39:51 +02:00
..
aux-files
patches gnu: python-pytorch: Update to 1.10.0. 2021-11-15 17:55:50 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: di: Update to 4.51. 2021-11-10 02:19:14 +01:00
adns.scm gnu: Add c-ares-for-node. 2021-11-15 22:43:23 +01:00
agda.scm
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: fmt: Update to 8.0.1. 2021-11-14 00:10:58 +01:00
attr.scm
audio.scm gnu: patchage: Build with Python 3. 2021-11-08 23:00:56 +01:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: borgmatic: Fix typo in description. 2021-11-15 21:17:21 +01:00
base.scm gnu: tar: Replace with 1.34 [fixes CVE-2021-20193]. 2021-11-12 02:52:46 -05:00
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
bioconductor.scm gnu: r-msfeatures: Fix typo. 2021-11-14 17:41:48 -08:00
bioinformatics.scm gnu: python-scanpy: Run tests conditionally. 2021-11-15 15:21:06 +00:00
bison.scm
bittorrent.scm
boost.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
bootloaders.scm gnu: u-boot, u-boot-am335x-boneblack, u-boot-novena: Fix lint warnings. 2021-11-14 13:47:51 -08:00
bootstrap.scm
browser-extensions.scm
build-tools.scm gnu: bear: Update to 3.0.16. 2021-11-14 00:10:58 +01:00
busybox.scm
c.scm gnu: libhx: Update to 4.2. 2021-11-10 02:19:14 +01:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm gnu: cuirass: Update to 1.1.0-5.ea09658. 2021-11-12 10:30:59 +00:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
cppi.scm
cran.scm
crates-graphics.scm
crates-gtk.scm
crates-io.scm gnu: Add rust-adblock-0.4. 2021-11-15 11:39:17 +01:00
cross-base.scm
crypto.scm gnu: Add BLAKE3 command line tool. 2021-11-10 11:35:58 -05:00
cryptsetup.scm
cups.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
curl.scm
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
databases.scm gnu: python-sqlalchemy: Update to 1.4.27. 2021-11-15 00:25:06 +01:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm gnu: debianutils: Update to 5.5-1. 2021-11-09 08:48:49 +02:00
debug.scm
dejagnu.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm gnu: diffoscope: Update to 192. 2021-11-12 15:08:55 -08:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
djvu.scm
dlang.scm
dns.scm gnu: knot: Update to 3.1.4. 2021-11-08 02:15:24 +01:00
docbook.scm
docker.scm
documentation.scm
dunst.scm gnu: dunst: Update to 1.7.1. 2021-11-09 17:38:54 +01:00
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-helm: Update to 3.8.1. 2021-11-15 21:43:39 +01:00
emacs.scm
embedded.scm
emulators.scm
enchant.scm
engineering.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
enlightenment.scm gnu: terminology: Update to 1.11.0. 2021-11-14 09:17:59 +02:00
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm gnu: fcitx5-configtool: Update to 5.0.8. 2021-11-10 20:24:54 +08:00
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: Add python-ta-lib. 2021-11-15 17:40:30 +01:00
firmware.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
games.scm gnu: stockfish: Update to 14.1. 2021-11-15 11:33:24 +01:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm gnu: genimage: Update to 14. 2021-11-12 12:02:32 +00:00
geo.scm gnu: Add python-rtree. 2021-11-15 17:49:24 +01:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm
gnome-xyz.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
gnome.scm
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm gnu: pinentry-tty: Update to 1.2.0. 2021-11-14 14:11:59 +02:00
gnustep.scm
gnuzilla.scm gnu: mozjs-78: Update to 78.6.1. 2021-11-09 12:45:08 +01:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
gtk.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
guile-wm.scm
guile-xyz.scm gnu: guile-netlink: Update to 1.1. 2021-11-15 16:05:19 +01:00
guile.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
gv.scm
gxmessage.scm
hardware.scm
haskell-apps.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
haskell-check.scm gnu: ghc-quickcheck-classes-base: Fix typo. 2021-11-14 17:50:49 -08:00
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: Add nsxiv. 2021-11-14 15:20:18 +01:00
image.scm gnu: libavif: Restrict dependency on rav1e to x86_64. 2021-11-08 12:22:13 -05:00
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
ipfs.scm
irc.scm
irods.scm
iso-codes.scm
jami.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia-jll.scm build-system/julia: Enable Julia Pkg to find installed packages. 2021-11-16 14:39:51 +02:00
julia-xyz.scm build-system/julia: Enable Julia Pkg to find installed packages. 2021-11-16 14:39:51 +02:00
julia.scm build-system/julia: Enable Julia Pkg to find installed packages. 2021-11-16 14:39:51 +02:00
jupyter.scm
kawa.scm
kde-frameworks.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
key-mon.scm
kodi.scm gnu: fmt: Update to 8.0.1. 2021-11-14 00:10:58 +01:00
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm gnu: libuv-for-node: Update to 1.42.0. 2021-11-15 22:43:24 +01:00
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre 4.9: Update to 4.9.292. 2021-11-13 22:44:03 -05:00
lirc.scm
lisp-check.scm gnu: cl-fiasco: Update to 0.0.1-2.bb47d2f. 2021-11-08 09:34:02 +01:00
lisp-xyz.scm gnu: Add cl-https-everywhere. 2021-11-16 12:51:45 +01:00
lisp.scm
llvm.scm gnu: clang-toolchain: Add libomp. 2021-11-15 17:55:49 +01:00
logging.scm gnu: spdlog: Update to 1.9.2. 2021-11-14 00:10:58 +01:00
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm gnu: fmt: Update to 8.0.1. 2021-11-14 00:10:58 +01:00
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: python-pytorch: Update to 1.10.0. 2021-11-15 17:55:50 +01:00
magic-wormhole.scm
mail.scm gnu: alot: Disable hanging test. 2021-11-14 23:18:08 +01:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: profanity: Update to 0.11.1. 2021-11-15 11:10:16 +01:00
microcom.scm
minetest.scm
mingw.scm
moe.scm
monitoring.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: MPD: Update to 0.23.4. 2021-11-14 20:55:00 -05:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add music21. 2021-11-15 11:17:50 +01:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: mbuffer: Update to 20211018. 2021-11-08 23:00:57 +01:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm gnu: node-lts: Update to 14.18.1 [security fixes]. 2021-11-15 22:43:24 +01:00
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-37.200ffe7. 2021-11-15 21:49:21 +00:00
pantheon.scm
parallel.scm
pascal.scm
password-utils.scm
patchutils.scm
patool.scm
pciutils.scm
pcre.scm
pdf.scm gnu: pdfarranger: Update to 1.8.0. 2021-11-15 21:41:26 +01:00
pem.scm
pep.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
photo.scm
php.scm
piet.scm
pkg-config.scm
plan9.scm
plotutils.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm gnu: fmt: Update to 8.0.1. 2021-11-14 00:10:58 +01:00
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm gnu: python-poetry-core: Update to 1.0.7. 2021-11-11 00:18:15 +01:00
python-check.scm gnu: python-pytest-astropy: Adjust inputs. 2021-11-08 10:04:31 +02:00
python-compression.scm
python-crypto.scm
python-science.scm gnu: python-pingouin: Update to 0.5.0. 2021-11-15 17:19:52 +05:30
python-web.scm gnu: python-furl: Update to 2.1.3. 2021-11-15 11:57:37 +05:30
python-xyz.scm gnu: Add python-minikanren. 2021-11-15 17:55:50 +01:00
python.scm
qt.scm
racket.scm
radio.scm
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm
ruby.scm
rush.scm
rust-apps.scm
rust.scm
sagemath.scm
samba.scm gnu: samba: Update to 4.13.14. 2021-11-10 00:09:40 +02:00
sawfish.scm
scanner.scm gnu: scandb: Fix typo. 2021-11-14 17:57:22 -08:00
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm gnu: plocate: Update to 1.1.13. 2021-11-08 23:00:56 +01:00
security-token.scm
selinux.scm
sequoia.scm
serialization.scm
serveez.scm
shells.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
shellutils.scm gnu: renameutils: Fix license and tweak. 2021-11-14 00:29:58 +01:00
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm
spice.scm
sqlite.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
squirrel.scm
ssh.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
sssd.scm
stalonetray.scm
statistics.scm
stb.scm
stenography.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm
syndication.scm
synergy.scm
task-management.scm gnu: taskwarrior: Update to 2.6.1. 2021-11-15 22:26:50 +01:00
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm
terminals.scm gnu: Add mtm. 2021-11-15 11:26:17 +01:00
terraform.scm
tex.scm gnu: Add texlive-fira. 2021-11-15 11:34:58 +00:00
texinfo.scm
text-editors.scm
textutils.scm
time.scm
tls.scm gnu: certbot, python-acme: Update to 1.18.0. 2021-11-10 01:03:37 -05:00
tmux.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: diff-so-fancy: Update to 1.4.2. 2021-11-15 11:07:31 +01:00
video.scm gnu: libaom: Update to 3.2.0. 2021-11-09 10:30:02 -05:00
vim.scm
virtualization.scm gnu: libx86emu: Update to 3.4. 2021-11-08 23:00:57 +01:00
visidata.scm
vlang.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
vnc.scm
vpn.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: lagrange: Update to 1.8.2. 2021-11-15 10:18:09 +02:00
web.scm gnu: hpcguix-web: Update to 0.2.0. 2021-11-15 17:55:50 +01:00
webkit.scm
wget.scm
wicd.scm
wine.scm
wireservice.scm
wm.scm gnu: waybar: Update to 0.9.8. 2021-11-14 00:10:58 +01:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: scrot: Update to 1.7. 2021-11-15 11:05:29 +01:00
xfce.scm
xfig.scm
xiph.scm
xml.scm gnu: minixml: Update to 3.3. 2021-11-08 23:00:56 +01:00
xnee.scm
xorg.scm gnu: packages: Remove last year's deprecations. 2021-11-08 23:00:55 +01:00
zig.scm
zile.scm
zwave.scm