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guix/gnu/packages/patches/openfoam-4.1-cleanup.patch
Paul Garlick 8f21aa22bf
gnu: Add openfoam. 
*gnu/packages/patches/openfoam-4.1-cleanup.patch: New file
*gnu/packages/simulation.scm: New file
*gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00

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# This patch removes all need for the ThirdParty files of OpenFOAM.
# Derived from EasyBuild patch by Ward Poelmans <wpoely86@gmail.com>.
# Modified for GNU Guix by Paul Garlick <pgarlick@tourbillion-technology.com>.
diff -ur OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
--- OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake
+++ OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
@@ -9,7 +9,7 @@
#
# use readline if available
#
-if [ -f /usr/include/readline/readline.h ]
+if true
then
echo "Found <readline/readline.h> -- enabling readline support."
export COMP_FLAGS="-DHAS_READLINE"
diff -ur OpenFOAM-4.x-version-4.1.org/etc/bashrc OpenFOAM-4.x-version-4.1/etc/bashrc
--- OpenFOAM-4.x-version-4.1.org/etc/bashrc
+++ OpenFOAM-4.x-version-4.1/etc/bashrc
@@ -43,8 +43,10 @@
# Please set to the appropriate path if the default is not correct.
#
[ $BASH_SOURCE ] && \
-export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
+export FOAM_INST_DIR=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P) || \
export FOAM_INST_DIR=$HOME/$WM_PROJECT
+# For GNU Guix: set initially for build then re-set at runtime
+#
# export FOAM_INST_DIR=~$WM_PROJECT
# export FOAM_INST_DIR=/opt/$WM_PROJECT
# export FOAM_INST_DIR=/usr/local/$WM_PROJECT
diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL
+++ OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
@@ -36,37 +36,7 @@
#
#------------------------------------------------------------------------------
-boost_version=boost-system
-cgal_version=cgal-system
-#cgal_version=CGAL-4.8
-
-if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ]
-then
-
- common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
-
- export BOOST_ARCH_PATH=$common_path/$boost_version
- export CGAL_ARCH_PATH=$common_path/$cgal_version
-
- if [ "$FOAM_VERBOSE" -a "$PS1" ]
- then
- echo "Using CGAL and boost" 1>&2
- echo " $cgal_version at $CGAL_ARCH_PATH" 1>&2
- echo " $boost_version at $BOOST_ARCH_PATH" 1>&2
- fi
-
- if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ]
- then
- _foamAddLib $CGAL_ARCH_PATH/lib
- fi
-
- if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ]
- then
- _foamAddLib $BOOST_ARCH_PATH/lib
- fi
-
- unset boost_version cgal_version common_path
-
-fi
+export CGAL_ARCH_PATH=$CGAL_ROOT
+export BOOST_ARCH_PATH=$BOOST_ROOT
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools
+++ OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
@@ -29,13 +29,5 @@
#
#------------------------------------------------------------------------------
-version=svn
-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
-
-GPERFTOOLS_VERSION=gperftools-$version
-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
-
-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis OpenFOAM-4.x-version-4.1/etc/config.sh/metis
--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis
+++ OpenFOAM-4.x-version-4.1/etc/config.sh/metis
@@ -34,7 +34,7 @@
#
#------------------------------------------------------------------------------
-export METIS_VERSION=metis-5.1.0
-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
+export METIS_VERSION=metis-$METISVERSION
+export METIS_ARCH_PATH=$METIS_ROOT
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch
+++ OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
@@ -37,7 +37,7 @@
#
#------------------------------------------------------------------------------
-export SCOTCH_VERSION=scotch_6.0.3
-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
+export SCOTCH_VERSION=scotch_$SCOTCHVERSION
+export SCOTCH_ARCH_PATH=$SCOTCH_ROOT
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings OpenFOAM-4.x-version-4.1/etc/config.sh/settings
--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings
+++ OpenFOAM-4.x-version-4.1/etc/config.sh/settings
@@ -279,6 +279,9 @@
;;
system)
# Use system compiler
+ # Use system GMP and MPFR packages
+ export GMP_ARCH_PATH=$GMP_ROOT
+ export MPFR_ARCH_PATH=$MPFR_ROOT
;;
*)
echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2
diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options
+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
@@ -5,8 +5,7 @@
$(PFLAGS) $(PINC) \
-I$(SCOTCH_ROOT)/include \
-I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
+ -L$(SCOTCH_ROOT)/lib -L$(MPI_ARCH_PATH)/lib -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options
+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
@@ -9,8 +9,7 @@
$(PFLAGS) $(PINC) \
-I$(SCOTCH_ROOT)/include \
-I$(SCOTCH_ARCH_PATH)/include \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt
+ -L$(SCOTCH_ROOT)/lib -lscotch -lscotcherrexit -lrt
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general OpenFOAM-4.x-version-4.1/wmake/makefiles/general
--- OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general
+++ OpenFOAM-4.x-version-4.1/wmake/makefiles/general
@@ -33,7 +33,6 @@
# The Makefile uses a POSIX shell
#------------------------------------------------------------------------------
-SHELL = /bin/sh
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmake OpenFOAM-4.x-version-4.1/wmake/wmake
--- OpenFOAM-4.x-version-4.1.org/wmake/wmake
+++ OpenFOAM-4.x-version-4.1/wmake/wmake
@@ -163,7 +163,7 @@
then
if [ "$WM_NCOMPPROCS" -gt 1 -a ! "$MAKEFLAGS" ]
then
- lockDir=$HOME/.$WM_PROJECT/.wmake
+ lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
if [ -d $lockDir ]
then
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler
+++ OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
@@ -53,7 +53,7 @@
# csh sets HOST, bash sets HOSTNAME
: ${HOST:=$HOSTNAME}
-lockDir=$HOME/.$WM_PROJECT/.wmake
+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
# Fallback - 1 core on current host
: ${WM_HOSTS:=$HOST:1}
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime
+++ OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
@@ -53,7 +53,7 @@
# csh sets HOST, bash sets HOSTNAME
: ${HOST:=$HOSTNAME}
-lockDir=$HOME/.$WM_PROJECT/.wmake
+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
# Fallback - 1 core on current host
: ${WM_HOSTS:=$HOST:1}
diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C
+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
@@ -67,7 +67,7 @@
// Processor weights initialised with no size, only used if specified in
// a file
- Field<scalar> processorWeights;
+ Field<floatScalar> processorWeights;
// Cell weights (so on the vertices of the dual)
List<label> cellWeights;
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
--- OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL
+++ OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
@@ -6,9 +6,10 @@
-I/usr/include
CGAL_LIBS = \
- -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
- -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
+ -L$(MPFR_ARCH_PATH)/lib \
+ -L$(GMP_ARCH_PATH)/lib \
-L$(BOOST_ARCH_PATH)/lib \
-L$(CGAL_ARCH_PATH)/lib \
-lCGAL \
+ -lgmp \
-lmpfr
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
--- OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++
+++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
@@ -20,5 +20,5 @@
LINK_LIBS = $(c++DBUG)
-LINKLIBSO = $(CC) $(c++FLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
-LINKEXE = $(CC) $(c++FLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
+LINKLIBSO = $(CC) $(c++FLAGS) $(LDFLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
+LINKEXE = $(CC) $(c++FLAGS) $(LDFLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
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