guix/gnu
Maxim Cournoyer 4e01bc440a
gnu: python-pysam: Update to version 0.16.0.1.
The check phase was failing with:

starting phase `check'
make: Entering directory '...drv-0/python-pysam-0.15.1-checkout/tests/pysam_data'
samtools faidx ex1.fa
samtools import ex1.fa.fai ex1.sam.gz ex1.bam
[main] "samtools import" has been removed. Please use "samtools view" instead.
make: *** [Makefile:56: ex1.bam] Error 1

* gnu/packages/bioinformatics.scm (python-pysam): Update to version 0.16.0.1.
[phases]{check}: Delete a couple more failing test files.
[native-inputs]: Add python-pytest.
2020-11-13 10:17:00 -05:00
..
bootloader system: Generate grub locale directory for grub.cfg. 2020-11-01 01:14:36 +01:00
build shepherd: Remove dependency on (guix utils). 2020-11-05 16:13:50 +01:00
installer installer: parted: Add debug output. 2020-11-08 19:40:44 +01:00
machine machine: ssh: Do not import the host (guix config). 2020-11-09 23:27:09 +01:00
packages gnu: python-pysam: Update to version 0.16.0.1. 2020-11-13 10:17:00 -05:00
services services: nginx: Re-introduce server-names-hash-bucket-size. 2020-11-09 22:53:50 +01:00
system vm: expression->derivation-in-linux-vm: Run in a UTF-8 locale. 2020-11-10 21:49:15 +01:00
tests tests: nfs-root-fs: Use the right store file name. 2020-11-07 12:48:24 +01:00
artwork.scm
bootloader.scm
ci.scm ci: Restore license handling. 2020-11-02 21:02:39 +01:00
image.scm
installer.scm
local.mk gnu: audiofile: Shorten patch file names. 2020-11-10 17:49:14 +01:00
machine.scm
packages.scm
services.scm
system.scm system: Change comment wording. 2020-11-02 18:22:33 +01:00
tests.scm