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https://git.in.rschanz.org/ryan77627/guix.git
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7fedc3fdfb
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
61 lines
2.9 KiB
Diff
61 lines
2.9 KiB
Diff
--- a/src/H5.c
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+++ b/src/H5.c
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@@ -138,7 +138,7 @@
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if (mpi_initialized && !mpi_finalized) {
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int key_val;
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- if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_NULL_COPY_FN,
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+ if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,
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(MPI_Comm_delete_attr_function *)H5_mpi_delete_cb,
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&key_val, NULL)))
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HMPI_GOTO_ERROR(FAIL, "MPI_Comm_create_keyval failed", mpi_code)
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--- hdf5-1.10.4/testpar/t_cache.c
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+++ hdf5-1.10.4/testpar/t_cache.c
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@@ -1217,20 +1217,20 @@
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struct mssg_t sample; /* used to compute displacements */
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/* setup the displacements array */
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- if ( ( MPI_SUCCESS != MPI_Address(&sample.req, &displs[0]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.src, &displs[1]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.dest, &displs[2]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.mssg_num, &displs[3]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.base_addr, &displs[4]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.len, &displs[5]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.ver, &displs[6]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.count, &displs[7]) ) ||
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- ( MPI_SUCCESS != MPI_Address(&sample.magic, &displs[8]) ) ) {
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+ if ( ( MPI_SUCCESS != MPI_Get_address(&sample.req, &displs[0]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.src, &displs[1]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.dest, &displs[2]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.mssg_num, &displs[3]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.base_addr, &displs[4]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.len, &displs[5]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.ver, &displs[6]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.count, &displs[7]) ) ||
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+ ( MPI_SUCCESS != MPI_Get_address(&sample.magic, &displs[8]) ) ) {
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nerrors++;
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success = FALSE;
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if ( verbose ) {
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- HDfprintf(stdout, "%d:%s: MPI_Address() call failed.\n",
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+ HDfprintf(stdout, "%d:%s: MPI_Get_address() call failed.\n",
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world_mpi_rank, FUNC);
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}
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@@ -1245,14 +1245,14 @@
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if ( success ) {
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- result = MPI_Type_struct(9, block_len, displs, mpi_types, &mpi_mssg_t);
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+ result = MPI_Type_create_struct(9, block_len, displs, mpi_types, &mpi_mssg_t);
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if ( result != MPI_SUCCESS ) {
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nerrors++;
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success = FALSE;
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if ( verbose ) {
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- HDfprintf(stdout, "%d:%s: MPI_Type_struct() call failed.\n",
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+ HDfprintf(stdout, "%d:%s: MPI_Type_create_struct() call failed.\n",
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world_mpi_rank, FUNC);
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}
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}
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