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2d6f68aa3b
* gnu/packages/mpi.scm (intel-mpi-benchmarks): Remove. * gnu/packages/benchmark.scm (imb): Rename to... (intel-mpi-benchmarks): ... this. Change 'name'. Update to 2019.3. [arguments]: Remove 'build phase. Rewrite 'install phase. Pass #:parallel-build? and #:make-flags. (intel-mpi-benchmarks/openmpi): New variable. (imb-openmpi): Rewrite in terms of 'deprecated-package'.
233 lines
9.7 KiB
Scheme
233 lines
9.7 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
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;;; Copyright © 2017 Dave Love <fx@gnu.org>
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;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2019 Eric Bavier <bavier@member.fsf.org>
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;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com>
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;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages benchmark)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages storage)
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#:use-module (ice-9 match))
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(define-public fio
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(package
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(name "fio")
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(version "3.16")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://brick.kernel.dk/snaps/"
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"fio-" version ".tar.bz2"))
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(sha256
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(base32
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"17hi6cd4wahghh7kgvxcvmrhcqlmqag3a07id90hhzwd3zhvdxbp"))))
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(build-system gnu-build-system)
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(arguments
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'(#:test-target "test"
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#:phases
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(modify-phases %standard-phases
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(add-after
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'unpack 'patch-paths
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out"))
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(gnuplot (string-append (assoc-ref inputs "gnuplot")
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"/bin/gnuplot")))
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(substitute* "tools/plot/fio2gnuplot"
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(("/usr/share/fio") (string-append out "/share/fio"))
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;; FIXME (upstream): The 'gnuplot' executable is used inline
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;; in various os.system() calls mixed with *.gnuplot filenames.
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(("; do gnuplot") (string-append "; do " gnuplot))
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(("gnuplot mymath") (string-append gnuplot " mymath"))
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(("gnuplot mygraph") (string-append gnuplot " mygraph")))
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#t)))
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(replace 'configure
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(lambda* (#:key outputs #:allow-other-keys)
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;; The configure script doesn't understand some of the
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;; GNU options, so we can't use #:configure-flags.
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(let ((out (assoc-ref outputs "out")))
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(invoke "./configure"
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(string-append "--prefix=" out))
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#t)))
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;; The main `fio` executable is fairly small and self contained.
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;; Moving the auxiliary python and gnuplot scripts to a separate
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;; output saves almost 400 MiB on the closure.
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(add-after 'install 'move-outputs
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((oldbin (string-append (assoc-ref outputs "out") "/bin"))
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(newbin (string-append (assoc-ref outputs "utils") "/bin")))
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(mkdir-p newbin)
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(for-each (lambda (file)
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(let ((src (string-append oldbin "/" file))
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(dst (string-append newbin "/" file)))
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(link src dst)
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(delete-file src)))
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'("fio2gnuplot" "fiologparser_hist.py"
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"fiologparser.py"))
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;; Make sure numpy et.al is found.
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(wrap-program (string-append newbin "/fiologparser_hist.py")
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`("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))))
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#t))))))
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(outputs '("out" "utils"))
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(inputs
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`(("ceph" ,ceph "lib")
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("libaio" ,libaio)
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("gnuplot" ,gnuplot)
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("zlib" ,zlib)
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("python-numpy" ,python2-numpy)
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("python-pandas" ,python2-pandas)
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("python" ,python-2)))
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(home-page "https://github.com/axboe/fio")
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(synopsis "Flexible I/O tester")
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(description
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"fio is a tool that will spawn a number of threads or processes doing a
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particular type of I/O action as specified by the user. The typical use of fio
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is to write a job file matching the I/O load one wants to simulate.")
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;; The software is distributed under the GPL2, but a handful of components
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;; are covered by other licenses.
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(license (list license:gpl2 license:gpl2+ license:bsd-2
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license:public-domain))))
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;; Parameterized in anticipation of m(va)pich support
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(define (intel-mpi-benchmarks mpi)
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(package
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(name (string-append "intel-mpi-benchmarks"
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(if (string=? (package-name mpi) "openmpi")
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""
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(string-append "-" (package-name mpi)))))
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(version "2019.3")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/intel/mpi-benchmarks.git")
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(commit (string-append "IMB-v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0si5xi6ilhd3w0gbsg124589pvp094hvf366rvjjb9pi7pdk5p4i"))))
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(build-system gnu-build-system)
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(inputs
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`(("mpi" ,mpi)))
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(delete 'check)
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(define (benchmark? file stat)
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(and (string-prefix? "IMB-" (basename file))
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(executable-file? file)))
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin")))
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(for-each (lambda (file)
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(install-file file bin))
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(find-files "." benchmark?))
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#t))))
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;; The makefile doesn't express all the dependencies, it seems.
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#:parallel-build? #t
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#:make-flags '("CC=mpicc" "CXX=mpicxx")))
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(home-page "https://software.intel.com/en-us/articles/intel-mpi-benchmarks")
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(synopsis "Benchmarks for the Message Passing Interface (MPI)")
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(description
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"This package provides benchmarks for implementations of the @dfn{Message
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Passing Interface} (MPI). It contains MPI performance measurements for
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point-to-point and global communication, and file, operations for a range of
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message sizes. The generated benchmark data fully characterize:
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@itemize
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@item
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Performance of a cluster system, including node performance, network latency,
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and throughput;
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@item
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Efficiency of the MPI implementation.
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@end itemize")
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(license license:cpl1.0)))
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(define-public intel-mpi-benchmarks/openmpi
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(intel-mpi-benchmarks openmpi))
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(define-public imb-openmpi
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(deprecated-package "imb-openmpi" intel-mpi-benchmarks/openmpi))
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(define-public multitime
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(package
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(name "multitime")
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(version "1.4")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://tratt.net/laurie/src/"
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"multitime/releases/"
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"multitime-" version ".tar.gz"))
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(sha256
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(base32
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"0iyfsdrbyqa7a4ifrh19l9a48hgv7ld6m0d8yf9bkl12q0qw91fx"))))
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(build-system gnu-build-system)
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(arguments '(#:tests? #f)) ; there are no tests
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(home-page "https://tratt.net/laurie/src/multitime/")
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(synopsis "Time command execution over multiple executions")
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(description
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"The @code{time} utility is a simple and often effective way of measuring
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how long a command takes to run (wall time). Unfortunately, running a command
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once can give misleading timings. @code{multitime} is, in essence, a simple
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extension to @code{time} which runs a command multiple times and prints the
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timing means, standard deviations, mins, medians, and maxes having done so.
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This can give a much better understanding of the command's performance.")
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(license license:expat)))
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(define-public benchmark
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(package
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(name "benchmark")
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(version "1.5.0")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/google/benchmark.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0r9dbg4cbk47gwmayys31a83m3y67k0kh1f6pl8i869rbd609ndh"))
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(patches (search-patches "benchmark-unbundle-googletest.patch"))))
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(build-system cmake-build-system)
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(native-inputs
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`(("googletest" ,googletest)))
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(home-page "https://github.com/google/benchmark")
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(synopsis "Microbenchmark support library")
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(description
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"Benchmark is a library to benchmark code snippets,
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similar to unit tests.")
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(license license:asl2.0)))
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