Tobias Geerinckx-Rice 5713bbf157 Use HTTPS for bioconductor.org. ... * doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise.		2017-10-21 17:43:40 +02:00
..
build	download: Download a nar when a VCS checkout fails.	2017-10-19 23:21:49 +02:00
build-system	Use HTTPS for bioconductor.org.	2017-10-21 17:43:40 +02:00
import	Use HTTPS for bioconductor.org.	2017-10-21 17:43:40 +02:00
scripts	Add (guix progress).	2017-10-19 23:21:49 +02:00
store	store: Support 'ssh://' URIs in 'GUIX_DAEMON_SOCKET'.	2017-04-21 19:17:36 +02:00
tests	tests: Support multiple HTTP server instances.	2017-10-12 23:47:48 +02:00
base16.scm	utils: Move base16 procedures to (guix base16).	2017-03-16 22:50:14 +01:00
base32.scm	base32: Export the base32 charsets.	2017-07-21 17:03:24 +02:00
base64.scm	base64: Turn into a regular Guile module.	2017-05-25 14:25:17 +02:00
build-system.scm
cache.scm	cache: Work around 'time-monotonic' bug in Guile 2.2.2.	2017-04-22 14:42:15 +02:00
combinators.scm	Add (guix memoization).	2017-01-28 18:55:20 +01:00
config.scm.in	pull: Install (guix config) module to override the user's one.	2016-07-20 22:53:02 +02:00
cpio.scm
cve.scm	cve: Disable position recording while reading the CVE list.	2017-09-19 23:58:25 +02:00
cvs-download.scm	download: Download a nar when a VCS checkout fails.	2017-10-19 23:21:49 +02:00
derivations.scm	derivations: Introduce 'read-derivation-from-file'.	2017-06-12 17:53:51 +02:00
discovery.scm	discovery: Recurse into directories pointed to by a symlink.	2017-07-03 23:51:23 +02:00
docker.scm	pack: Add '--target'.	2017-03-18 00:38:41 +01:00
download.scm	guix: mirrors: Add kde archive mirror.	2017-10-10 17:01:32 +03:00
elf.scm
ftp-client.scm	ftp-client: Allow custom username and password for FTP servers.	2017-03-21 12:14:05 +01:00
gcrypt.scm
gexp.scm	gexp: Slightly improve error reporting for 'local-file'.	2017-07-20 18:08:00 +02:00
git-download.scm	download: Download a nar when a VCS checkout fails.	2017-10-19 23:21:49 +02:00
git.scm	guix: git: Stop using libgit2-shutdown.	2017-07-01 16:32:42 +02:00
gnu-maintenance.scm	upstream: Add new GNOME updater.	2017-09-26 00:35:06 +02:00
gnupg.scm	ui: Rename '_' to 'G_'.	2017-05-03 16:16:17 +02:00
grafts.scm	derivations: Introduce 'read-derivation-from-file'.	2017-06-12 17:53:51 +02:00
graph.scm	Revert "graph: Provide access to the package record in the emit functions."	2017-08-24 23:55:51 +02:00
hash.scm	Use (ice-9 binary-ports) instead of (rnrs io ports).	2016-10-19 15:54:10 +02:00
hg-download.scm	download: Download a nar when a VCS checkout fails.	2017-10-19 23:21:49 +02:00
http-client.scm	http-client: Reset cache TTL upon 304 "Not Modified" responses.	2017-09-26 00:35:06 +02:00
licenses.scm	licenses: Add CC-Sampling+ 1.0.	2017-09-22 08:04:32 -04:00
memoization.scm	memoization: (mlambda () ...) allows for inner 'define'.	2017-09-03 23:36:17 +02:00
modules.scm	modules: Raise an error when a dependency could not be found.	2017-05-25 14:25:17 +02:00
monad-repl.scm
monads.scm	monads: Add a template and specialization mechanism for monadic procedures.	2017-05-02 23:41:13 +02:00
nar.scm	ui: Rename '_' to 'G_'.	2017-05-03 16:16:17 +02:00
packages.scm	packages: Use Guile 2.0 for grafting.	2017-08-24 00:41:44 +02:00
pk-crypto.scm	publish: The public and private keys are now SRFI-39 parameters.	2017-03-22 14:05:59 +01:00
pki.scm	Use (ice-9 binary-ports) instead of (rnrs io ports).	2016-10-19 15:54:10 +02:00
profiles.scm	profiles: Only check file contents if the file exists.	2017-08-09 14:46:48 +02:00
progress.scm	Add (guix progress).	2017-10-19 23:21:49 +02:00
records.scm	records: Slight simplification.	2017-04-17 23:31:28 +02:00
scripts.scm	scripts: Do not create the config directory.	2017-05-13 00:03:46 +02:00
search-paths.scm	search-paths: Allow specs with #f as their separator.	2017-01-23 22:23:41 +01:00
serialization.scm	serialization: Remove Guile < 2.0.9 workaround.	2017-04-17 23:31:28 +02:00
sets.scm
ssh.scm	ssh: Improve error reporting when 'send-files' fails.	2017-06-04 23:00:32 +02:00
store.scm	store: Add missing import.	2017-10-07 17:08:32 +02:00
svn-download.scm	guix: Add download-svn-to-store.	2017-06-15 17:03:14 +02:00
tests.scm	store: 'GUIX_DAEMON_SOCKET' can now be a URI.	2017-04-21 17:23:37 +02:00
ui.scm	ui: Improve reporting of missing closing parentheses.	2017-10-10 23:12:03 +02:00
upstream.scm	guix: lint: Add checker for new upstream versions.	2017-10-09 14:05:17 +03:00
utils.scm	Add (guix progress).	2017-10-19 23:21:49 +02:00
workers.scm	scripts: Set thread names.	2017-05-28 23:13:39 +02:00
zlib.scm	zlib: Fix memory leak due to revealed ports not being GC'd.	2017-10-11 15:20:50 +02:00