mirror of
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232796ce60
* gnu/packages/image-processing.scm (insight-toolkit)[outputs]: Add "python" output. [arguments]: Add configure flags to build Python bindings; add phase 'ignore-warnings. [native-inputs]: Add castxml, swig, and which. (insight-toolkit-4)[outputs]: Override. [native-inputs]: Override. Change-Id: I4177d0c0239027290678a43f2ea26cb8e1e74918
1867 lines
73 KiB
Scheme
1867 lines
73 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2017 John Darrington <jmd@gnu.org>
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;;; Copyright © 2017, 2019, 2022, 2024 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2014, 2021-2023 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
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;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
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;;; Copyright © 2018 Lprndn <guix@lprndn.info>
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;;; Copyright © 2019, 2021, 2023 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
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;;; Copyright © 2020, 2021, 2024 Vinicius Monego <monego@posteo.net>
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;;; Copyright © 2020 Pierre Neidhardt <mail@ambrevar.xyz>
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;;; Copyright © 2020 Brendan Tildesley <mail@brendan.scot>
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;;; Copyright © 2021 Oleh Malyi <astroclubzp@gmail.com>
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;;; Copyright © 2021, 2022, 2024 Felix Gruber <felgru@posteo.net>
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;;; Copyright © 2021 Andy Tai <atai@atai.org>
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;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech>
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;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
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;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
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;;; Copyright © 2021 Ivan Gankevich <i.gankevich@spbu.ru>
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;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
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;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
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;;; Copyright © 2023 Cairn <cairn@pm.me>
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;;;
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;;; This file is part of GNU Guix.
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;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
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;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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|
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(define-module (gnu packages image-processing)
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#:use-module ((guix licenses) #:prefix license:)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix gexp)
|
||
#:use-module (guix utils)
|
||
#:use-module (guix download)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix build-system qt)
|
||
#:use-module (guix build-system cmake)
|
||
#:use-module (guix build-system gnu)
|
||
#:use-module (guix build-system python)
|
||
#:use-module (gnu packages)
|
||
#:use-module (gnu packages algebra)
|
||
#:use-module (gnu packages base)
|
||
#:use-module (gnu packages bison)
|
||
#:use-module (gnu packages boost)
|
||
#:use-module (gnu packages check)
|
||
#:use-module (gnu packages compression)
|
||
#:use-module (gnu packages cpp)
|
||
#:use-module (gnu packages curl)
|
||
#:use-module (gnu packages docbook)
|
||
#:use-module (gnu packages documentation)
|
||
#:use-module (gnu packages flex)
|
||
#:use-module (gnu packages fontutils)
|
||
#:use-module (gnu packages game-development)
|
||
#:use-module (gnu packages gcc)
|
||
#:use-module (gnu packages gd)
|
||
#:use-module (gnu packages geo)
|
||
#:use-module (gnu packages ghostscript)
|
||
#:use-module (gnu packages gimp)
|
||
#:use-module (gnu packages gl)
|
||
#:use-module (gnu packages glib)
|
||
#:use-module (gnu packages gnome)
|
||
#:use-module (gnu packages graphics)
|
||
#:use-module (gnu packages graphviz)
|
||
#:use-module (gnu packages gstreamer)
|
||
#:use-module (gnu packages gtk)
|
||
#:use-module (gnu packages icu4c)
|
||
#:use-module (gnu packages image)
|
||
#:use-module (gnu packages imagemagick)
|
||
#:use-module (gnu packages linux)
|
||
#:use-module (gnu packages maths)
|
||
#:use-module (gnu packages mpi)
|
||
#:use-module (gnu packages opencl)
|
||
#:use-module (gnu packages pdf)
|
||
#:use-module (gnu packages perl)
|
||
#:use-module (gnu packages photo)
|
||
#:use-module (gnu packages pkg-config)
|
||
#:use-module (gnu packages pretty-print)
|
||
#:use-module (gnu packages protobuf)
|
||
#:use-module (gnu packages python)
|
||
#:use-module (gnu packages python-check)
|
||
#:use-module (gnu packages python-science)
|
||
#:use-module (gnu packages python-xyz)
|
||
#:use-module (gnu packages qt)
|
||
#:use-module (gnu packages sdl)
|
||
#:use-module (gnu packages serialization)
|
||
#:use-module (gnu packages sphinx)
|
||
#:use-module (gnu packages sqlite)
|
||
#:use-module (gnu packages swig)
|
||
#:use-module (gnu packages tbb)
|
||
#:use-module (gnu packages textutils)
|
||
#:use-module (gnu packages tls)
|
||
#:use-module (gnu packages version-control)
|
||
#:use-module (gnu packages video)
|
||
#:use-module (gnu packages xiph)
|
||
#:use-module (gnu packages xml)
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||
#:use-module (gnu packages xorg)
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||
#:use-module (ice-9 match)
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#:use-module (srfi srfi-1))
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||
|
||
;; TODO: this is not reproducible.
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(define-public bart
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(package
|
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(name "bart")
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(version "0.8.00")
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(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/mrirecon/bart")
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||
(commit "eacc67b95cf128487ecc48f0e6541ea4dca08818")))
|
||
(file-name (git-file-name name version))
|
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(sha256
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(base32 "05lcf7c3g7ms5h82bw1mi4kzkdv5wpqi1zrfhqfkgbcpd3irj6aq"))))
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(build-system gnu-build-system)
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(arguments
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||
(list
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#:test-target "utest"
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#:make-flags #~(list
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(string-append "PREFIX=" #$output)
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"PARALLEL=1"
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"PARALLEL_NJOBS=1"
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"OPENBLAS=1"
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"SCALAPACK=1"
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||
(string-append "BLAS_BASE=" #$(this-package-input "openblas"))
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(string-append "FFTW_BASE=" #$(this-package-input "fftw")))
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#:parallel-build? #false ;leads to non-deterministic output
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#:phases
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||
#~(modify-phases %standard-phases
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||
(delete 'configure)
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||
(add-after 'unpack 'patch-/bin/bash
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(lambda _
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(substitute* "tests/pics.mk"
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(("/bin/bash") (which "bash"))))))))
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(inputs
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(list fftw
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fftwf
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libpng
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openblas
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python
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scalapack))
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(native-inputs
|
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(list doxygen
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util-linux)) ;for flock
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(home-page "https://mrirecon.github.io/bart/")
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(synopsis "Toolbox for computational magnetic resonance imaging")
|
||
(description "The Berkeley Advanced Reconstruction Toolbox (BART) is an
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image-reconstruction framework for Computational Magnetic Resonance Imaging.
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The tools in this software implement various reconstruction algorithms for
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Magnetic Resonance Imaging.")
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(license license:bsd-3)))
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|
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(define-public dcmtk
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||
(package
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||
(name "dcmtk")
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(version "3.6.7")
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||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri
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||
(string-append "ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/"
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"dcmtk" (string-join (string-split version #\.) "")
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||
"/dcmtk-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "02kix73qhndgb56cmi5327666i6imp7hi17wwqp26q4d7s72jn3w"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
;; By default, only static archives are built.
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(list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
|
||
(inputs
|
||
(list icu4c
|
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libjpeg-turbo
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||
libpng
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||
libtiff
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||
libxml2
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||
openssl
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||
zlib))
|
||
(native-inputs
|
||
(list doxygen)) ; for HTML documentation
|
||
(home-page "https://dcmtk.org")
|
||
(synopsis "Libraries and programs implementing parts of the DICOM standard")
|
||
(description "DCMTK is a collection of libraries and applications
|
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implementing large parts the DICOM standard. It includes software for
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examining, constructing and converting DICOM image files, handling offline
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||
media, sending and receiving images over a network connection, as well as
|
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demonstrative image storage and worklist servers.")
|
||
(license (license:fsf-free
|
||
"file://COPYRIGHT"
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"A union of the Apache 2.0 licence and various non-copyleft
|
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licences similar to the Modified BSD licence."))))
|
||
|
||
(define-public mia
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||
(package
|
||
(name "mia")
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||
(version "2.4.7")
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||
(source (origin
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||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/mia/mia/"
|
||
(version-major+minor version)
|
||
"/mia-" version ".tar.xz"))
|
||
(sha256
|
||
(base32
|
||
"0qpcd3n26q52dpyibm11f5l6cgscdr54p2jish39gc3p1f5h3ws1"))
|
||
(patches (search-patches "mia-fix-boost-headers.patch"
|
||
"mia-vtk9.patch"
|
||
"mia-vtk92.patch"
|
||
"mia-vtk-version.patch"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list "-DMIA_CREATE_NIPYPE_INTERFACES=OFF"
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||
"-DCMAKE_CXX_FLAGS=-fpermissive")))
|
||
(inputs
|
||
(list boost
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dcmtk
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||
doxygen
|
||
eigen
|
||
fftw
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||
fftwf
|
||
gsl
|
||
gts
|
||
hdf5
|
||
itpp
|
||
libjpeg-turbo
|
||
libpng
|
||
libtiff
|
||
libxml2
|
||
libxml++
|
||
maxflow
|
||
niftilib
|
||
nlopt
|
||
openexr-2
|
||
python-lxml
|
||
vtk))
|
||
(native-inputs
|
||
(list pkg-config
|
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python-wrapper))
|
||
(home-page "https://mia.sourceforge.net")
|
||
(synopsis "Toolkit for gray scale medical image analysis")
|
||
(description "MIA provides a combination of command line tools, plug-ins,
|
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and libraries that make it possible run image processing tasks interactively
|
||
in a command shell and to prototype using the shell's scripting language. It
|
||
is built around a plug-in structure that makes it easy to add functionality
|
||
without compromising the original code base and it makes use of a wide variety
|
||
of external libraries that provide additional functionality.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public opencolorio
|
||
(package
|
||
(name "opencolorio")
|
||
(version "1.1.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/AcademySoftwareFoundation/OpenColorIO")
|
||
(commit (string-append "v" version))))
|
||
(patches (search-patches "opencolorio-fix-build-with-gcc11.patch"))
|
||
(sha256
|
||
(base32 "12srvxca51czpfjl0gabpidj9n84mw78ivxy5w75qhq2mmc798sb"))
|
||
(file-name (git-file-name name version))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
`(begin
|
||
;; Remove bundled tarballs, patches, and .jars(!). XXX: Upstream
|
||
;; claims to have fixed USE_EXTERNAL_YAML, but it still fails with:
|
||
;; https://github.com/AcademySoftwareFoundation/OpenColorIO/issues/517
|
||
;; When removing it, also remove it from the licence field comment.
|
||
(for-each delete-file-recursively
|
||
(filter
|
||
(lambda (full-name)
|
||
(let ((file (basename full-name)))
|
||
(not (or (string-prefix? "yaml-cpp-0.3" file)
|
||
(string=? "unittest.h" file)))))
|
||
(find-files "ext" ".*")))
|
||
|
||
#t))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list (string-append "-DCMAKE_CXX_FLAGS="
|
||
"-Wno-error=deprecated-declarations "
|
||
"-Wno-error=unused-function")
|
||
"-DOCIO_BUILD_STATIC=OFF"
|
||
;; "-DUSE_EXTERNAL_YAML=ON"
|
||
"-DUSE_EXTERNAL_TINYXML=ON"
|
||
"-DUSE_EXTERNAL_LCMS=ON")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'patch-test-suite
|
||
(lambda _
|
||
(substitute* "src/core_tests/CMakeLists.txt"
|
||
(("/bin/sh") (which "bash")))
|
||
#t)))))
|
||
(native-inputs
|
||
(list git pkg-config))
|
||
(inputs
|
||
;; XXX Adding freeglut, glew, ilmbase, mesa, and openimageio for
|
||
;; ocioconvert fails: error: conflicting declaration ?typedef void
|
||
;; (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, GLfloat*)
|
||
(list lcms openexr-2 tinyxml))
|
||
(home-page "https://opencolorio.org")
|
||
(synopsis "Color management for visual effects and animation")
|
||
(description
|
||
"OpenColorIO, or OCIO, is a complete color management solution geared
|
||
towards motion picture production, with an emphasis on visual effects and
|
||
computer animation. It provides a straightforward and consistent user
|
||
experience across all supporting applications while allowing for sophisticated
|
||
back-end configuration options suitable for high-end production usage.
|
||
|
||
OCIO is compatible with the @acronym{ACES, Academy Color Encoding
|
||
Specification} and is @acronym{LUT, look-up table}-format agnostic, supporting
|
||
many popular formats.")
|
||
(license (list license:expat ; docs/ociotheme/static, ext/yaml-cpp-*
|
||
license:zlib ; src/core/md5
|
||
license:bsd-3)))) ; the rest
|
||
|
||
(define-public vtk
|
||
(package
|
||
(name "vtk")
|
||
(version "9.2.2")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://vtk.org/files/release/"
|
||
(version-major+minor version)
|
||
"/VTK-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0x8h2bwxq2870067j7wqd0qym87pa3inkbri93zrdb0zwwmhlnqw"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
(for-each
|
||
(lambda (dir)
|
||
(delete-file-recursively
|
||
(string-append "ThirdParty/" dir "/vtk" dir)))
|
||
;; pugixml depended upon unconditionally
|
||
'("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
|
||
"glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
|
||
"libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
|
||
"tiff" "zlib"))
|
||
(substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
|
||
(("\\bHPDF_UINT16 (noPen|dash|dot|denseDot|dashDot|dashDotDot)\\b"
|
||
_ var)
|
||
(string-append "HPDF_REAL " var)))))))
|
||
(properties `((release-monitoring-url . "https://vtk.org/download/")))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list #:build-type "Release" ;Build without '-g' to save space.
|
||
#:configure-flags
|
||
#~'( ;;"-DBUILD_TESTING:BOOL=TRUE" ;not honored
|
||
"-DVTK_USE_EXTERNAL=OFF" ;default
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_libharu=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
|
||
;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON" ;breaks IO/CityGML
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"
|
||
"-DVTK_MODULE_ENABLE_VTK_RenderingExternal=YES" ;for F3D
|
||
"-DVTK_WRAP_PYTHON=ON"
|
||
"-DVTK_PYTHON_VERSION:STRING=3"
|
||
|
||
"-DVTK_SMP_ENABLE_OPENNMP=ON"
|
||
"-DVTK_SMP_ENABLE_TBB=ON"
|
||
"-DVTK_USE_MPI=ON"
|
||
#$@(if (target-riscv64?)
|
||
'("-DCMAKE_SHARED_LINKER_FLAGS=-latomic"
|
||
"-DCMAKE_EXE_LINKER_FLAGS=-latomic")
|
||
'()))
|
||
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'unpack 'clear-reference-to-compiler
|
||
(lambda _
|
||
(define (choose . files)
|
||
(let loop ((files files))
|
||
(if (null? files)
|
||
#f
|
||
(if (file-exists? (car files))
|
||
(car files)
|
||
(loop (cdr files))))))
|
||
|
||
;; Do not retain a reference to GCC.
|
||
(substitute* (choose
|
||
"Common/Core/vtkConfigureDeprecated.h.in" ;v9.x
|
||
"Common/Core/vtkConfigure.h.in") ;v7.x
|
||
(("@CMAKE_CXX_COMPILER@") "c++")))))
|
||
|
||
#:tests? #f)) ;XXX: test data not included
|
||
(inputs
|
||
(list double-conversion
|
||
eigen
|
||
expat
|
||
freetype
|
||
gl2ps
|
||
glew
|
||
glu
|
||
hdf5
|
||
libharu
|
||
libjpeg-turbo
|
||
jsoncpp
|
||
libtheora
|
||
libx11
|
||
libxml2
|
||
libxt
|
||
lz4
|
||
mesa
|
||
netcdf
|
||
libpng
|
||
libtiff
|
||
openmpi
|
||
proj
|
||
python
|
||
;("pugixml" ,pugixml)
|
||
sqlite
|
||
xorgproto
|
||
zlib))
|
||
(propagated-inputs
|
||
;; VTK's 'VTK-vtk-module-find-packages.cmake' calls
|
||
;; 'find_package(THEORA)', which in turns looks for libogg. Likewise for
|
||
;; TBB.
|
||
(list libogg
|
||
tbb))
|
||
(home-page "https://vtk.org/")
|
||
(synopsis "Libraries for 3D computer graphics")
|
||
(description
|
||
"The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics,
|
||
image processing and visualization. It supports a wide variety of
|
||
visualization algorithms including: scalar, vector, tensor, texture, and
|
||
volumetric methods; and advanced modeling techniques such as: implicit
|
||
modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay
|
||
triangulation. VTK has an extensive information visualization framework, has
|
||
a suite of 3D interaction widgets, supports parallel processing, and
|
||
integrates with various databases on GUI toolkits such as Qt and Tk.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public vtk-7
|
||
(package
|
||
(inherit vtk)
|
||
(version "7.1.1")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://vtk.org/files/release/"
|
||
(version-major+minor version)
|
||
"/VTK-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0nm7xwwj7rnsxjdv2ssviys8nhci4n9iiiqm2y14s520hl2dsp1d"))
|
||
(patches (search-patches "vtk-7-python-compat.patch"
|
||
"vtk-7-hdf5-compat.patch"
|
||
"vtk-7-gcc-10-compat.patch"
|
||
"vtk-7-gcc-11-compat.patch"))))
|
||
(arguments
|
||
(substitute-keyword-arguments (package-arguments vtk)
|
||
((#:configure-flags flags)
|
||
;; Otherwise, the build would fail with: "error: invalid conversion
|
||
;; from ‘const char*’ to ‘char*’ [-fpermissive]".
|
||
#~(cons "-DCMAKE_CXX_FLAGS=-fpermissive" #$flags))
|
||
((#:phases phases)
|
||
#~(modify-phases #$phases
|
||
(add-after 'unpack 'remove-kernel-version
|
||
;; Avoid embedding the kernel version for reproducible builds
|
||
(lambda _
|
||
(substitute*
|
||
"ThirdParty/hdf5/vtkhdf5/config/cmake/libhdf5.settings.cmake.in"
|
||
(("Host system: \\@CMAKE_HOST_SYSTEM\\@")
|
||
"Host system: @CMAKE_SYSTEM_NAME@"))))))))))
|
||
|
||
(define-public opencv
|
||
(package
|
||
(name "opencv")
|
||
(version "4.9.0")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/opencv/opencv")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
;; Remove external libraries. Almost all of them are
|
||
;; available in Guix.
|
||
(with-directory-excursion "3rdparty"
|
||
(for-each delete-file-recursively
|
||
'("carotene"
|
||
"cpufeatures"
|
||
"flatbuffers"
|
||
"ffmpeg"
|
||
"include"
|
||
"ippicv"
|
||
"ittnotify"
|
||
"libjasper"
|
||
"libjpeg"
|
||
"libjpeg-turbo"
|
||
"libpng"
|
||
"libtiff"
|
||
"libwebp"
|
||
"openexr"
|
||
"openjpeg"
|
||
"openvx"
|
||
"protobuf"
|
||
;;"quirc"
|
||
"tbb"
|
||
"zlib")))
|
||
|
||
;; Delete any bundled .jar files.
|
||
(for-each delete-file (find-files "." "\\.jar$"))))
|
||
(sha256
|
||
(base32
|
||
"1s3d2bzf74biz18flb33533dfx3j31305ddh4gzgvg55hpr1zp55"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list "-DWITH_ADE=OFF" ;we don't have a package for ade yet
|
||
"-DWITH_IPP=OFF"
|
||
"-DWITH_ITT=OFF"
|
||
"-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64
|
||
"-DENABLE_PRECOMPILED_HEADERS=OFF"
|
||
"-DOPENCV_GENERATE_PKGCONFIG=ON"
|
||
|
||
;; CPU-Features:
|
||
;; See cmake/OpenCVCompilerOptimizations.cmake
|
||
;; (CPU_ALL_OPTIMIZATIONS) for a list of all optimizations
|
||
;; BASELINE is the minimum optimization all CPUs must support
|
||
;;
|
||
;; DISPATCH is the list of optional dispatches.
|
||
"-DCPU_BASELINE=SSE2"
|
||
|
||
;; Build Python bindings.
|
||
"-DBUILD_opencv_python3=ON"
|
||
|
||
,@(match (%current-system)
|
||
("x86_64-linux"
|
||
'("-DCPU_DISPATCH=NEON;VFPV3;FP16;SSE;SSE2;SSE3;SSSE3;SSE4_1;SSE4_2;POPCNT;AVX;FP16;AVX2;FMA3;AVX_512F;AVX512_SKX"
|
||
"-DCPU_DISPATCH_REQUIRE=SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2"))
|
||
("armhf-linux"
|
||
'("-DCPU_BASELINE_DISABLE=NEON")) ; causes build failures
|
||
("aarch64-linux"
|
||
'("-DCPU_BASELINE=NEON"
|
||
"-DCPU_DISPATCH=NEON;VFPV3;FP16"))
|
||
(_ '()))
|
||
|
||
"-DBUILD_PERF_TESTS=OFF"
|
||
"-DBUILD_TESTS=ON"
|
||
|
||
(string-append "-DOPENCV_EXTRA_MODULES_PATH=" (getcwd)
|
||
"/opencv-contrib/modules")
|
||
|
||
;;Define test data:
|
||
(string-append "-DOPENCV_TEST_DATA_PATH=" (getcwd)
|
||
"/opencv-extra/testdata")
|
||
|
||
;; Is ON by default and would try to rebuild 3rd-party protobuf,
|
||
;; which we had removed, which would lead to an error:
|
||
"-DBUILD_PROTOBUF=OFF"
|
||
|
||
;; OpenCV tries to use flatbuffers in 3rdparty which we removed
|
||
;; so for now we don't buildfor flatbuffer support
|
||
;; TODO: make OpenCV use system flatbuffers which involves
|
||
;; modifying CMake files
|
||
"-DWITH_FLATBUFFERS=OFF"
|
||
|
||
;; Rebuild protobuf files, because we have a slightly different
|
||
;; version than the included one. If we would not update, we
|
||
;; would get a compile error later:
|
||
"-DPROTOBUF_UPDATE_FILES=ON"
|
||
|
||
;; For xfeatures2d.
|
||
"-DOPENCV_SKIP_FEATURES2D_DOWNLOADING=ON")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'disable-broken-tests
|
||
(lambda _
|
||
;; This test fails with "unknown file: Failure"
|
||
;; But I couldn't figure out which file was missing:
|
||
(substitute* "../opencv-contrib/modules/face/test/test_face_align.cpp"
|
||
(("\\bcan_detect_landmarks\\b" all)
|
||
(string-append "DISABLED_" all)))
|
||
|
||
;; This all fails with a comparison between the expected 396 and
|
||
;; the actual 440 in file size.
|
||
(substitute* "modules/imgcodecs/test/test_exr.impl.hpp"
|
||
(("\\breadWrite_32FC1\\b" all)
|
||
(string-append "DISABLED_" all)))
|
||
|
||
;; These fail with protobuf parse errors that come from
|
||
;; opencv-extra/alldata.
|
||
(substitute* "modules/dnn/test/test_layers.cpp"
|
||
(("\\b(Accum|DataAugmentation|Resample|Correlation|Interp)\\b" all)
|
||
(string-append "DISABLED_" all)))
|
||
|
||
;; This test fails on x86-64, loosen the bounds.
|
||
;; Expected: (max) < (0.1), actual: 0.2 vs 0.1
|
||
(substitute* "modules/photo/test/test_hdr.cpp"
|
||
(("0\\.1\\)") "0.222)"))
|
||
|
||
,@(if (target-aarch64?)
|
||
`(;; This test fails on aarch64, loosen the bounds.
|
||
;; Expected: (max) < (0.131), actual: 0.207148 vs 0.131
|
||
(substitute* "modules/photo/test/test_hdr.cpp"
|
||
(("0\\.131") "0.222"))
|
||
;; These tests hang forever on aarch64.
|
||
(delete-file-recursively "modules/videoio/test/"))
|
||
'())
|
||
|
||
,@(if (target-riscv64?)
|
||
`(;; This test fails on riscv64, loosen the bounds.
|
||
;; Expected: (max) < (0.1), actual: 0.220829 vs 0.1
|
||
(substitute* "modules/photo/test/test_hdr.cpp"
|
||
(("0\\.1") "0.240"))
|
||
;; Expected equality of these values:
|
||
;; ellipses.size()
|
||
;; Which is: 668
|
||
;; ellipses_size
|
||
;; Which is: 2449
|
||
(substitute* "../opencv-contrib/modules/ximgproc/test/test_fld.cpp"
|
||
(("\\bManySmallCircles\\b" all)
|
||
(string-append "DISABLED_" all))))
|
||
'())))
|
||
(add-after 'unpack 'unpack-submodule-sources
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(mkdir "../opencv-extra")
|
||
(mkdir "../opencv-contrib")
|
||
(copy-recursively (assoc-ref inputs "opencv-extra")
|
||
"../opencv-extra")
|
||
(copy-recursively (assoc-ref inputs "opencv-contrib")
|
||
"../opencv-contrib")
|
||
|
||
;; Disable downloads of Boost and VGG descriptors as we include
|
||
;; them in native inputs.
|
||
(substitute* "../opencv-contrib/modules/xfeatures2d/CMakeLists.txt"
|
||
(("download_(boost|vgg)_descriptors") "#"))
|
||
(copy-recursively (assoc-ref inputs "opencv-3rdparty-boost")
|
||
"../downloads/xfeatures2d")
|
||
(for-each make-file-writable
|
||
(find-files "../downloads/xfeatures2d" "."))
|
||
(copy-recursively (assoc-ref inputs "opencv-3rdparty-vgg")
|
||
"../downloads/xfeatures2d")))
|
||
(add-after 'build 'do-not-install-3rdparty-file
|
||
(lambda _
|
||
(substitute* "cmake_install.cmake"
|
||
(("file\\(INSTALL .*3rdparty/include/opencl/LICENSE.txt.*")
|
||
""))))
|
||
(add-before 'check 'start-xserver
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(let ((xorg-server (assoc-ref inputs "xorg-server"))
|
||
(disp ":1"))
|
||
(setenv "HOME" (getcwd))
|
||
(setenv "DISPLAY" disp)
|
||
;; There must be a running X server and make check doesn't start one.
|
||
;; Therefore we must do it.
|
||
(zero? (system (format #f "~a/bin/Xvfb ~a &" xorg-server disp)))))))))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("xorg-server" ,xorg-server-for-tests) ;For running the tests
|
||
;; These are files that are derived from the binary descriptors that
|
||
;; are part of the BinBoost package. The BinBoost package is released
|
||
;; under GPLv2+. See
|
||
;; https://www.epfl.ch/labs/cvlab/research/descriptors-and-keypoints/research-detect-binboost/
|
||
;; See xfeatures2d/cmake/download_boostdesc.cmake for commit hash.
|
||
("opencv-3rdparty-boost"
|
||
,(let ((commit "34e4206aef44d50e6bbcd0ab06354b52e7466d26"))
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference (url "https://github.com/opencv/opencv_3rdparty")
|
||
(commit commit)))
|
||
(file-name (git-file-name "opencv_3rdparty" commit))
|
||
(sha256
|
||
(base32
|
||
"13yig1xhvgghvxspxmdidss5lqiikpjr0ddm83jsi0k85j92sn62")))))
|
||
;; These are the Visual Geometry Group descriptors, released under
|
||
;; BSD-3. They are generated files produced by the DLCO framework.
|
||
;; See xfeatures2d/cmake/download_vgg.cmake for commit hash.
|
||
("opencv-3rdparty-vgg"
|
||
,(let ((commit "fccf7cd6a4b12079f73bbfb21745f9babcd4eb1d"))
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference (url "https://github.com/opencv/opencv_3rdparty")
|
||
(commit commit)))
|
||
(file-name (git-file-name "opencv_3rdparty" commit))
|
||
(sha256
|
||
(base32
|
||
"0r9fam8dplyqqsd3qgpnnfgf9l7lj44di19rxwbm8mxiw0rlcdvy")))))
|
||
("opencv-extra"
|
||
,(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/opencv/opencv_extra")
|
||
(commit version)))
|
||
(file-name (git-file-name "opencv_extra" version))
|
||
(sha256
|
||
(base32
|
||
"1x095sgc0fkl8zzpxlswpnmxkf80cvzab1ddcq792dys5qm2s1x4"))))
|
||
("opencv-contrib"
|
||
,(origin
|
||
(method git-fetch)
|
||
(uri (git-reference (url "https://github.com/opencv/opencv_contrib")
|
||
(commit version)))
|
||
(file-name (git-file-name "opencv_contrib" version))
|
||
(sha256
|
||
(base32
|
||
"17xrvzllbcrprxn6c0g4x25i2wa7yqa0ycv177wah3if9s30dgib"))))))
|
||
(inputs
|
||
(list eigen
|
||
ffmpeg-4
|
||
;; TODO: add gstreamer
|
||
gtk+
|
||
gtkglext
|
||
hdf5
|
||
ilmbase
|
||
imath ;should be propagated by openexr
|
||
jasper
|
||
libgphoto2
|
||
libjpeg-turbo
|
||
libpng
|
||
libtiff
|
||
libwebp
|
||
openblas
|
||
opencl-headers
|
||
openexr
|
||
openmpi
|
||
openjpeg
|
||
protobuf
|
||
python
|
||
python-numpy
|
||
vtk
|
||
zlib))
|
||
;; These three CVEs are not a problem of OpenCV, see:
|
||
;; https://github.com/opencv/opencv/issues/10998
|
||
(properties '((lint-hidden-cve . ("CVE-2018-7712"
|
||
"CVE-2018-7713"
|
||
"CVE-2018-7714"))))
|
||
(synopsis "Computer vision library")
|
||
(description "OpenCV is a library aimed at real-time computer vision,
|
||
including several hundred computer vision algorithms. It can be used to do
|
||
things like:
|
||
|
||
@itemize
|
||
@item image and video input and output
|
||
@item image and video processing
|
||
@item displaying
|
||
@item feature recognition
|
||
@item segmentation
|
||
@item facial recognition
|
||
@item stereo vision
|
||
@item structure from motion
|
||
@item augmented reality
|
||
@item machine learning
|
||
@end itemize\n
|
||
|
||
This package includes the Python bindings for OpenCV, which are also known as
|
||
the OpenCV-Python library.")
|
||
(home-page "https://opencv.org/")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public vips
|
||
(package
|
||
(name "vips")
|
||
(version "8.13.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://github.com/libvips/libvips/releases/download/v"
|
||
version "/vips-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "00kp3439jcqv9l2gcjg88xzvlq8clv54z1m3x66i3chvarz7ndxd"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list gobject-introspection pkg-config))
|
||
(inputs
|
||
(list expat
|
||
fftw
|
||
giflib
|
||
glib
|
||
hdf5
|
||
imagemagick
|
||
lcms
|
||
libexif
|
||
libgsf
|
||
libjpeg-turbo
|
||
libpng
|
||
(librsvg-for-system)
|
||
libtiff
|
||
libxml2
|
||
libwebp
|
||
matio
|
||
niftilib
|
||
openexr-2
|
||
orc
|
||
pango
|
||
poppler))
|
||
(home-page "https://libvips.github.io/libvips/")
|
||
(synopsis "Multithreaded image processing system with low memory needs")
|
||
(description
|
||
"VIPS is a demand-driven, horizontally threaded image processing library.
|
||
It's particularly good at processing large images, working with colour,
|
||
scientific analysis, and general research & development.
|
||
|
||
Compared to most image processing libraries VIPS needs little RAM and runs
|
||
quickly, especially on machines with more than one CPU core. This is primarily
|
||
due to its architecture which automatically parallelises the image workflows.")
|
||
(license license:lgpl2.1+)))
|
||
|
||
(define-public gmic
|
||
(package
|
||
(name "gmic")
|
||
(version "3.3.5")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://gmic.eu/files/source/gmic_"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "06vcwn8c8zhr1j0jy79an1f6vvjh47ipm19a20g3qsnxv7h5c905"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:tests? #f ;there are no tests
|
||
#:configure-flags '("-DBUILD_LIB_STATIC=OFF"
|
||
"-DENABLE_DYNAMIC_LINKING=ON"
|
||
"-DENABLE_LTO=ON")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'configure 'set-LDFLAGS
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(setenv "LDFLAGS"
|
||
(string-append
|
||
"-Wl,-rpath="
|
||
(assoc-ref outputs "out") "/lib")))))))
|
||
(native-inputs
|
||
(list pkg-config))
|
||
(inputs
|
||
(list curl
|
||
fftw
|
||
graphicsmagick
|
||
imath
|
||
libjpeg-turbo
|
||
libpng
|
||
libtiff
|
||
libx11
|
||
openexr
|
||
zlib))
|
||
(home-page "https://gmic.eu/")
|
||
(synopsis "Full-featured framework for digital image processing")
|
||
(description "G'MIC is a full-featured framework for digital image
|
||
processing. It provides several user interfaces to convert / manipulate
|
||
/ filter / visualize generic image datasets, ranging from 1D scalar
|
||
signals to 3D+t sequences of multi-spectral volumetric images, hence
|
||
including 2D color images.")
|
||
;; Dual-licensed, either license applies.
|
||
(license (list license:cecill license:cecill-c))))
|
||
|
||
(define-public gmic-qt
|
||
(package
|
||
(inherit gmic)
|
||
(name "gmic-qt")
|
||
(arguments
|
||
(substitute-keyword-arguments (package-arguments gmic)
|
||
((#:configure-flags _)
|
||
`(list "-DGMIC_QT_HOST=none" "-DENABLE_DYNAMIC_LINKING=ON"
|
||
(string-append "-DGMIC_LIB_PATH="
|
||
(assoc-ref %build-inputs "gmic") "/lib")))
|
||
((#:phases phases)
|
||
`(modify-phases ,phases
|
||
(add-after 'unpack 'qt-chdir
|
||
(lambda _ (chdir "gmic-qt") #t))))))
|
||
(native-inputs
|
||
(list pkg-config qttools-5))
|
||
(inputs
|
||
(modify-inputs (package-inputs gmic)
|
||
(prepend gmic qtbase-5)))
|
||
(synopsis "Qt frontend for the G'MIC image processing framework")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public gmic-qt-gimp
|
||
(package
|
||
(inherit gmic-qt)
|
||
(name "gmic-qt-gimp")
|
||
(inputs
|
||
;; GIMP and its dependencies.
|
||
(modify-inputs (package-inputs gmic-qt)
|
||
(prepend gimp gdk-pixbuf cairo gegl)))
|
||
(arguments
|
||
(substitute-keyword-arguments (package-arguments gmic-qt)
|
||
((#:configure-flags flags)
|
||
'(list "-DGMIC_QT_HOST=gimp" "-DENABLE_DYNAMIC_LINKING=ON"
|
||
(string-append "-DGMIC_LIB_PATH="
|
||
(assoc-ref %build-inputs "gmic") "/lib")))))
|
||
(synopsis "GIMP plugin for the G'MIC image processing framework")))
|
||
|
||
(define-public nip2
|
||
(package
|
||
(name "nip2")
|
||
(version "8.7.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/libvips/nip2/releases/download/v"
|
||
version "/nip2-" version ".tar.gz" ))
|
||
(sha256
|
||
(base32 "0l7n427njif53npqn02gfjjly8y3khbrkzqxp10j5vp9h97psgiw"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
;; test_conv.ws keep failing so disabling for now.
|
||
(add-after 'unpack 'disable-test-conv
|
||
(lambda _
|
||
(delete-file "test/workspaces/test_conv.ws")
|
||
#t))
|
||
(add-before 'check 'set-home
|
||
(lambda _
|
||
(setenv "HOME" "/tmp") #t)))))
|
||
(inputs
|
||
(list vips
|
||
glib
|
||
libtiff
|
||
gtk+-2
|
||
libxml2
|
||
libexif
|
||
libjpeg-turbo ;required by vips.pc
|
||
(librsvg-for-system)
|
||
fftw
|
||
libgsf
|
||
imagemagick
|
||
orc
|
||
matio
|
||
lcms
|
||
libwebp
|
||
openexr-2
|
||
poppler
|
||
gsl))
|
||
(native-inputs
|
||
(list flex bison pkg-config))
|
||
(home-page "https://github.com/libvips/nip2")
|
||
(synopsis "Spreadsheet-like GUI for libvips")
|
||
(description "This package provide a graphical user interface (GUI) for
|
||
the VIPS image processing library. It's a little like a spreadsheet: you
|
||
create a set of formula connecting your objects together, and on a change nip2
|
||
recalculates.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public paraview
|
||
(package
|
||
(name "paraview")
|
||
(version "5.11.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://gitlab.kitware.com/paraview/paraview.git")
|
||
(commit (string-append "v" version))
|
||
(recursive? #t)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0m1lgkl95f0pyhxp97gq2rf8hibv39v4c49imfj1va40z0flvard"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
;; TODO: Also remove unused bundled libraries and plugins?
|
||
#~(begin
|
||
;; Remove bundled ParaView libraries which are available in Guix
|
||
;; or undesired.
|
||
(for-each (lambda (dir)
|
||
(delete-file-recursively
|
||
(string-append "ThirdParty/" dir "/vtk"
|
||
(string-downcase dir))))
|
||
'(;;"CosmoHaloFinder"
|
||
;;"IceT"
|
||
"NvPipe" ; Don't want NvPipe support
|
||
;;"QtTesting"
|
||
;;"cinema"
|
||
;;"cinemasci"
|
||
"protobuf"))
|
||
;; Remove undesired ParaView plugins.
|
||
(delete-file-recursively "Plugins/pvNVIDIAIndeX")
|
||
;; Remove bundled VTK libraries which are available in Guix.
|
||
(for-each (lambda (dir)
|
||
(delete-file-recursively
|
||
(string-append "VTK/ThirdParty/" dir "/vtk" dir)))
|
||
'(;;"cgns"
|
||
"cli11"
|
||
;;"diy2"
|
||
"doubleconversion"
|
||
"eigen"
|
||
;;"exodusII"
|
||
"expat"
|
||
;;"exprtk"
|
||
;;"fides"
|
||
"fmt"
|
||
"freetype"
|
||
"gl2ps"
|
||
"glew"
|
||
;;"h5part"
|
||
"hdf5"
|
||
;;"ioss"
|
||
"jpeg"
|
||
"jsoncpp"
|
||
;;"kissfft"
|
||
;;"libharu" ; Requires some PRs applied to 2.3.0
|
||
"libproj"
|
||
"libxml2"
|
||
;;"loguru"
|
||
"lz4"
|
||
"lzma"
|
||
"mpi4py"
|
||
"netcdf"
|
||
"nlohmannjson"
|
||
"ogg"
|
||
;;"pegtl"
|
||
"png"
|
||
"pugixml"
|
||
"sqlite"
|
||
"theora"
|
||
"tiff"
|
||
"utf8"
|
||
;;"verdict"
|
||
;;"vpic"
|
||
;;"vtkm"
|
||
;;"xdmf2"
|
||
;;"xdmf3"
|
||
;;"zfp"
|
||
"zlib"))))))
|
||
(build-system qt-build-system)
|
||
(arguments
|
||
(list
|
||
#:build-type "Release" ; 542 MiB in release mode
|
||
#:tests? #f ; Downloads test data
|
||
#:configure-flags
|
||
#~(let ((doc (string-append #$output "/share/doc/" #$name "-" #$version)))
|
||
(list
|
||
(string-append "-DCMAKE_INSTALL_DOCDIR=" doc) ; For paraview.qch
|
||
|
||
;; ParaView build options
|
||
"-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION=ON"
|
||
(string-append "-DPARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY=" doc)
|
||
|
||
;; ParaView capability options
|
||
;;"-DPARAVIEW_USE_EXTERNAL_VTK=ON" ; Unsupported by ParaView
|
||
"-DPARAVIEW_USE_MPI=ON"
|
||
"-DPARAVIEW_USE_PYTHON=ON"
|
||
"-DPARAVIEW_USE_QTWEBENGINE=ON"
|
||
|
||
;; ParaView features
|
||
;;
|
||
;; Enable those that are disabled by default.
|
||
;; Commented means the dependencies are missing from Guix
|
||
;; (or are otherwise described).
|
||
;;"-DPARAVIEW_ENABLE_ADIOS2=ON"
|
||
;;"-DPARAVIEW_ENABLE_COSMOTOOLS=ON"
|
||
;;"-DPARAVIEW_ENABLE_CATALYST=ON"
|
||
"-DPARAVIEW_ENABLE_FFMPEG=ON"
|
||
;;"-DPARAVIEW_ENABLE_FIDES=ON"
|
||
"-DPARAVIEW_ENABLE_GDAL=ON"
|
||
;;"-DPARAVIEW_ENABLE_LAS=ON"
|
||
;;"-DPARAVIEW_ENABLE_LOOKINGGLASS=ON" ; Downloads dependency
|
||
;;"-DPARAVIEW_ENABLE_MOMENTINVARIANTS=ON" ; Downloads dependency
|
||
"-DPARAVIEW_ENABLE_MOTIONFX=ON"
|
||
;;"-DPARAVIEW_ENABLE_OPENTURNS=ON"
|
||
;;"-DPARAVIEW_ENABLE_OPENVDB=ON" ; Dependency not found
|
||
;;"-DPARAVIEW_ENABLE_PDAL=ON"
|
||
;;"-DPARAVIEW_ENABLE_RAYTRACING=ON"
|
||
"-DPARAVIEW_ENABLE_VISITBRIDGE=ON"
|
||
"-DPARAVIEW_ENABLE_XDMF3=ON"
|
||
|
||
;; ParaView miscellaneous options
|
||
;;
|
||
;; Without -DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF, test data is
|
||
;; downloaded even with tests disabled.
|
||
"-DPARAVIEW_VERSIONED_INSTALL=OFF"
|
||
"-DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF"
|
||
|
||
;; ParaView plugins
|
||
;;
|
||
;; Enable those that are disabled by default.
|
||
;; Commented means the dependencies are missing from Guix
|
||
;; (or are otherwise described).
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderPixie=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderStaging=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_CAVEInteraction=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_CDIReader=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_GeographicalMap=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_GmshIO=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_InSituExodus=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_LookingGlass=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_ParFlow=ON" ; Build fails
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_PythonQtPlugin=ON"
|
||
"-DPARAVIEW_PLUGIN_ENABLE_SpaceMouseInteractor=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_VDFReaderPlugin=ON"
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_XRInterface=ON" ; Build fails
|
||
;;"-DPARAVIEW_PLUGIN_ENABLE_zSpace=ON"
|
||
|
||
;; VTK options
|
||
"-DVTK_SMP_IMPLEMENTATION_TYPE=TBB"
|
||
"-DVTKm_ENABLE_MPI=ON"
|
||
|
||
;; External libraries for ParaView and VTK
|
||
"-DVTK_MODULE_USE_EXTERNAL_ParaView_protobuf=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_cli11=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_fmt=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_lzma=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_mpi4py=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
|
||
;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_utf8=ON"
|
||
"-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'set-paths 'hide-gfortran
|
||
(lambda _
|
||
(setenv "CPLUS_INCLUDE_PATH"
|
||
(string-join
|
||
(delete (string-append #$(this-package-native-input "gfortran")
|
||
"/include/c++")
|
||
(string-split (getenv "CPLUS_INCLUDE_PATH") #\:))
|
||
":"))))
|
||
(replace 'install-license-files
|
||
(lambda _
|
||
(let ((src (string-append #$output "/share/licenses/ParaView"))
|
||
(dst (string-append #$output "/share/doc/"
|
||
#$name "-" #$version "/licenses")))
|
||
(copy-recursively src dst)
|
||
(delete-file-recursively (dirname src))))))))
|
||
(native-inputs
|
||
(list gfortran
|
||
;; For the documentation
|
||
doxygen
|
||
graphviz
|
||
perl
|
||
python-sphinx))
|
||
(inputs
|
||
(list boost
|
||
cli11
|
||
curl
|
||
double-conversion
|
||
eigen
|
||
expat
|
||
ffmpeg
|
||
fmt
|
||
freetype
|
||
gdal
|
||
gl2ps
|
||
glew
|
||
gmsh
|
||
hdf5
|
||
nlohmann-json ;For ParFlow; build fails
|
||
jsoncpp
|
||
libjpeg-turbo
|
||
libogg
|
||
libpng
|
||
libtheora
|
||
libtiff
|
||
libxcursor
|
||
libxml2
|
||
libxt
|
||
lz4
|
||
lzip
|
||
mesa
|
||
netcdf
|
||
openmpi
|
||
;;openvdb ;For OpenVDB; dependency not found
|
||
;;openvr ;For XRInterface; build fails
|
||
;;pegtl ;For VTK; build fails
|
||
proj
|
||
protobuf
|
||
pugixml
|
||
python-cftime
|
||
python-matplotlib
|
||
python-mpi4py
|
||
python-numpy
|
||
python-wrapper
|
||
qtbase-5
|
||
qtdeclarative-5
|
||
qtmultimedia-5
|
||
qtsvg-5
|
||
qttools-5
|
||
qtwebchannel-5
|
||
qtwebengine-5
|
||
qtx11extras
|
||
qtxmlpatterns
|
||
sdl2
|
||
sqlite
|
||
tbb
|
||
utfcpp
|
||
zlib))
|
||
(home-page "https://www.paraview.org/")
|
||
(synopsis "VTK-based, parallel data analyzer and visualizer")
|
||
(description "ParaView is a VTK-based, parallel data analyzer and
|
||
visualizer which allows exploring data interactively in 3D or
|
||
programmatically.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public vxl
|
||
(package
|
||
(name "vxl")
|
||
(version "3.5.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/vxl/vxl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0iqq4lm51l5gvkax6r79ypifqmgir3p3vman9gsc2085d2agjvbs"))
|
||
(modules '((guix build utils)))
|
||
;; TODO: vxl includes an old version of dcmtk. It won't build with
|
||
;; version 3.6.x.
|
||
(snippet
|
||
'(begin
|
||
(for-each delete-file-recursively
|
||
'("v3p/bzlib/"
|
||
"v3p/geotiff/"
|
||
"v3p/jpeg/"
|
||
"v3p/png/"
|
||
"v3p/tiff/"
|
||
"v3p/zlib/"))
|
||
(substitute* "v3p/CMakeLists.txt"
|
||
(("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
|
||
""))
|
||
#t))))
|
||
(build-system cmake-build-system)
|
||
(inputs
|
||
(list libgeotiff libtiff libjpeg-turbo libpng zlib))
|
||
(home-page "https://github.com/vxl/vxl/")
|
||
(synopsis "Collection of C++ libraries for computer vision")
|
||
(description "VXL (the Vision-something-Libraries) is a collection of C++
|
||
libraries designed for computer vision research and implementation.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public vxl-1
|
||
(package (inherit vxl)
|
||
(name "vxl")
|
||
(version "1.18.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/vxl/vxl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1g4mr2cc58jwm0vasscbd4y5380wj3ahkvq121z4gs83fhavvxgz"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
(for-each delete-file-recursively
|
||
'("v3p/bzlib/"
|
||
"v3p/geotiff/"
|
||
"v3p/png/"
|
||
"v3p/tiff/"
|
||
"v3p/zlib/"))
|
||
(substitute* "v3p/CMakeLists.txt"
|
||
(("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
|
||
""))
|
||
#t))))
|
||
(arguments
|
||
`(#:configure-flags
|
||
;; Needed for itk-snap
|
||
(list "-DVNL_CONFIG_LEGACY_METHODS=ON")))))
|
||
|
||
(define-public insight-toolkit
|
||
(package
|
||
(name "insight-toolkit")
|
||
(version "5.0.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
|
||
"releases/download/v" version "/InsightToolkit-"
|
||
version ".tar.xz"))
|
||
(sha256
|
||
(base32 "0bs63mk4q8jmx38f031jy5w5n9yy5ng9x8ijwinvjyvas8cichqi"))))
|
||
(build-system cmake-build-system)
|
||
(outputs '("out" "python"))
|
||
(arguments
|
||
(list #:tests? #f ; tests require network access and external data
|
||
#:configure-flags
|
||
#~(list "-DITK_USE_GPU=ON"
|
||
"-DITK_USE_SYSTEM_LIBRARIES=ON"
|
||
"-DITK_USE_SYSTEM_GOOGLETEST=ON"
|
||
"-DITK_USE_SYSTEM_CASTXML=ON"
|
||
"-DITK_BUILD_SHARED=ON"
|
||
"-DITK_WRAPPING=ON"
|
||
"-DITK_WRAP_PYTHON=ON"
|
||
"-DITK_DYNAMIC_LOADING=ON"
|
||
(let* ((python-version
|
||
#$(version-major+minor
|
||
(package-version (this-package-input "python"))))
|
||
(python-lib-path
|
||
(string-append #$output:python
|
||
"/lib/python" python-version
|
||
"/site-packages")))
|
||
(string-append "-DPY_SITE_PACKAGES_PATH=" python-lib-path))
|
||
;; This prevents "GTest::GTest" from being added to the ITK_LIBRARIES
|
||
;; variable in the installed CMake files. This is necessary as other
|
||
;; packages using insight-toolkit could not be configured otherwise.
|
||
"-DGTEST_ROOT=gtest"
|
||
"-DCMAKE_CXX_STANDARD=17")
|
||
|
||
#:phases #~(modify-phases %standard-phases
|
||
(add-after 'unpack 'do-not-tune
|
||
(lambda _
|
||
(substitute* "CMake/ITKSetStandardCompilerFlags.cmake"
|
||
(("-mtune=native")
|
||
""))))
|
||
(add-after 'unpack 'ignore-warnings
|
||
(lambda _
|
||
(substitute* "Wrapping/Generators/Python/CMakeLists.txt"
|
||
(("-Werror") "")))))))
|
||
(inputs
|
||
(list eigen
|
||
expat
|
||
fftw
|
||
fftwf
|
||
hdf5
|
||
libjpeg-turbo
|
||
libpng
|
||
libtiff
|
||
mesa-opencl
|
||
perl
|
||
python
|
||
tbb
|
||
vxl-1
|
||
zlib))
|
||
(native-inputs
|
||
(list castxml googletest pkg-config swig which))
|
||
|
||
;; The 'CMake/ITKSetStandardCompilerFlags.cmake' file normally sets
|
||
;; '-mtune=native -march=corei7', suggesting there's something to be
|
||
;; gained from CPU-specific optimizations.
|
||
(properties '((tunable? . #t)))
|
||
|
||
(home-page "https://github.com/InsightSoftwareConsortium/ITK/")
|
||
(synopsis "Scientific image processing, segmentation and registration")
|
||
(description "The Insight Toolkit (ITK) is a toolkit for N-dimensional
|
||
scientific image processing, segmentation, and registration. Segmentation is
|
||
the process of identifying and classifying data found in a digitally sampled
|
||
representation. Typically the sampled representation is an image acquired
|
||
from such medical instrumentation as CT or MRI scanners. Registration is the
|
||
task of aligning or developing correspondences between data. For example, in
|
||
the medical environment, a CT scan may be aligned with a MRI scan in order to
|
||
combine the information contained in both.")
|
||
(license license:asl2.0)))
|
||
|
||
(define-public insight-toolkit-4
|
||
(package (inherit insight-toolkit)
|
||
(version "4.13.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
|
||
"releases/download/v" version "/InsightToolkit-"
|
||
version ".tar.xz"))
|
||
(sha256
|
||
(base32 "19cgfpd63gqrvc3m27m394gy2d7w79g5y6lvznb5qqr49lihbgns"))))
|
||
(outputs '("out"))
|
||
(arguments
|
||
(list #:tests? #f ; tests require network access and external data
|
||
#:configure-flags #~'("-DITKV3_COMPATIBILITY=ON" ; needed for itk-snap
|
||
"-DITK_USE_GPU=ON"
|
||
"-DITK_USE_SYSTEM_LIBRARIES=ON"
|
||
"-DITK_USE_SYSTEM_GOOGLETEST=ON"
|
||
"-DITK_USE_SYSTEM_VXL=ON")))
|
||
(native-inputs
|
||
(list googletest pkg-config))))
|
||
|
||
(define-public insight-toolkit-4.12
|
||
(package (inherit insight-toolkit-4)
|
||
(version "4.12.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/itk/itk/4.12/"
|
||
"InsightToolkit-" version ".tar.xz"))
|
||
(sha256
|
||
(base32 "1qw9mxbh083siljygahl4gdfv91xvfd8hfl7ghwii19f60xrvn2w"))))
|
||
(arguments
|
||
(substitute-keyword-arguments (package-arguments insight-toolkit-4)
|
||
((#:configure-flags cf #~'())
|
||
;; error: ISO C++17 does not allow dynamic exception specifications
|
||
#~(cons* "-DCMAKE_CXX_FLAGS=-std=c++14" #$cf))))))
|
||
|
||
(define-public itk-snap
|
||
(package
|
||
(name "itk-snap")
|
||
(version "3.8.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://git.code.sf.net/p/itk-snap/src")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "15i5ixpryfrbf3vrrb5rici8fb585f25k0v1ljds16bp1f1msr4q"))
|
||
(patches (search-patches "itk-snap-alt-glibc-compat.patch"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list "-DSNAP_VERSION_GIT_SHA1=release"
|
||
"-DSNAP_VERSION_GIT_BRANCH=release"
|
||
"-DSNAP_VERSION_GIT_TIMESTAMP=0"
|
||
"-DSNAP_PACKAGE_QT_PLUGINS=OFF"
|
||
"-DCMAKE_POSITION_INDEPENDENT_CODE=ON")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
;; During the installation phase all libraries provided by all
|
||
;; dependencies will be copied to the lib directory. That's insane,
|
||
;; so we disable this.
|
||
(add-after 'unpack 'do-not-copy-dependencies
|
||
(lambda _
|
||
(substitute* "CMakeLists.txt"
|
||
(("install_qt5_executable\
|
||
\\(\\$\\{SNAP_MAIN_INSTALL_DIR\\}/\\$\\{SNAP_EXE\\}\\)")
|
||
""))))
|
||
(add-after 'unpack 'disable-gui-tests
|
||
(lambda _
|
||
;; The GUI tests just time out.
|
||
(substitute* "CMakeLists.txt"
|
||
((" (Workspace|DiffSpace|ProbeIntensity|RegionCompetition\
|
||
|RandomForest|RandomForestBailOut)")
|
||
""))))
|
||
(add-after 'unpack 'make-reproducible
|
||
(lambda _
|
||
(substitute* "CMakeLists.txt"
|
||
(("TODAY\\(SNAP_VERSION_COMPILE_DATE\\)")
|
||
"SET(SNAP_VERSION_COMPILE_DATE \"(removed for reproducibility)\")"))))
|
||
(add-after 'unpack 'prepare-submodules
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(rmdir "Submodules/c3d")
|
||
(copy-recursively (assoc-ref inputs "c3d-src")
|
||
"Submodules/c3d")
|
||
(substitute* '("Submodules/c3d/adapters/BiasFieldCorrectionN4.cxx"
|
||
"Submodules/c3d/adapters/ApplyMetric.cxx")
|
||
(("vcl_") "std::"))
|
||
(rmdir "Submodules/greedy")
|
||
(symlink (assoc-ref inputs "greedy-src")
|
||
"Submodules/greedy")))
|
||
(add-after 'unpack 'fix-includes
|
||
(lambda _
|
||
(substitute* "GUI/Model/RegistrationModel.cxx"
|
||
(("<vnl_symmetric_eigensystem.h>")
|
||
"<vnl/algo/vnl_symmetric_eigensystem.h>"))))
|
||
(add-before 'check 'prepare-tests
|
||
(lambda _
|
||
;; Needed by at least one test.
|
||
(setenv "HOME" "/tmp")))
|
||
(add-after 'install 'wrap-executable
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(wrap-program (string-append out "/bin/itksnap")
|
||
`("QT_PLUGIN_PATH" ":" prefix
|
||
,(map (lambda (label)
|
||
(string-append (assoc-ref inputs label)
|
||
"/lib/qt5/plugins"))
|
||
'("qtbase" "qtdeclarative-5"))))))))))
|
||
(inputs
|
||
(list curl
|
||
fftw
|
||
fftwf
|
||
glu
|
||
hdf5
|
||
mesa-opencl
|
||
;; This package does not build with either insight-toolkit 5.0.0
|
||
;; and not with 4.13. It really needs to be 4.12.
|
||
insight-toolkit-4.12
|
||
vtk-7
|
||
qtbase-5
|
||
qtdeclarative-5
|
||
vxl-1
|
||
zlib))
|
||
(native-inputs
|
||
`(("googletest" ,googletest)
|
||
("qttools-5" ,qttools-5)
|
||
("pkg-config" ,pkg-config)
|
||
("c3d-src"
|
||
,(let* ((commit "f521358db26e00002c911cc47bf463b043942ad3")
|
||
(revision "1")
|
||
(version (git-version "0" revision commit)))
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/pyushkevich/c3d")
|
||
(commit commit)))
|
||
(file-name (git-file-name "c3d" version))
|
||
(sha256
|
||
(base32
|
||
"0kyv3rxrxwr8c3sa9zv01lsnhk95b27gx1s870k3yi8qp52h7bx3")))))
|
||
;; We are using an arbitrary commit from 2017 because the latest
|
||
;; version breaks the build...
|
||
("greedy-src"
|
||
,(let* ((commit "97e340f7e8e66597599144947775e6039e79a0d3")
|
||
(revision "1")
|
||
(version (git-version "0" revision commit)))
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/pyushkevich/greedy")
|
||
(commit commit)))
|
||
(file-name (git-file-name "greedy" version))
|
||
(sha256
|
||
(base32
|
||
"0k5bc9za4jrc8z9dj08z1rkcp5xf0gnd1d2jmi1w9ny4vxh2q2ab")))))))
|
||
(home-page "https://sourceforge.net/p/itk-snap/")
|
||
(synopsis "Medical image segmentation")
|
||
(description "ITK-SNAP is a tool for segmenting anatomical structures in
|
||
medical images. It provides an automatic active contour segmentation
|
||
pipeline, along with supporting a manual segmentation toolbox. ITK-SNAP has a
|
||
full-featured UI aimed at clinical researchers.")
|
||
;; This includes the submodules greedy and c3d.
|
||
(license license:gpl3+)))
|
||
|
||
(define-public metapixel
|
||
;; Follow stable branch.
|
||
(let ((commit "98ee9daa093b6c334941242e63f90b1c2876eb4f"))
|
||
(package
|
||
(name "metapixel")
|
||
(version (git-version "1.0.2" "1" commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/schani/metapixel")
|
||
(commit commit)
|
||
;; TODO: Package rwimg and lispreader?
|
||
(recursive? #t)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0r7n3a6bvcxkbpda4mwmrpicii09iql5z69nkjqygkwxw7ny3309"))))
|
||
(build-system gnu-build-system)
|
||
(inputs
|
||
`(("giflib" ,giflib)
|
||
("libjpeg" ,libjpeg-turbo)
|
||
("libpng" ,libpng)
|
||
("perl" ,perl)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("docbook-xml" ,docbook-xml)
|
||
("docbook-xsl" ,docbook-xsl)
|
||
("xsltproc" ,libxslt)))
|
||
(arguments
|
||
`(#:tests? #f ; No tests.
|
||
#:make-flags (list
|
||
(string-append "PREFIX=" (assoc-ref %outputs "out"))
|
||
(string-append "MANPAGE_XSL="
|
||
(assoc-ref %build-inputs "docbook-xsl")
|
||
"/xml/xsl/docbook-xsl-*/manpages/docbook.xsl"))
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(delete 'configure)
|
||
(add-before 'install 'make-local-docbook-xml
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(substitute* "metapixel.xml"
|
||
(("http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd")
|
||
(string-append (assoc-ref inputs "docbook-xml")
|
||
"/xml/dtd/docbook/docbookx.dtd")))
|
||
#t))
|
||
(add-before 'install 'fix-directory-creation
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(mkdir-p (string-append (assoc-ref outputs "out") "/share/man/man1"))
|
||
#t)))))
|
||
(home-page "https://www.complang.tuwien.ac.at/schani/metapixel/")
|
||
(synopsis "Photomosaics generator")
|
||
(description "Metapixel is a program for generating photomosaics. It can
|
||
generate classical photomosaics, in which the source image is viewed as a
|
||
matrix of equally sized rectangles for each of which a matching image is
|
||
substituted, as well as collage-style photomosaics, in which rectangular parts
|
||
of the source image at arbitrary positions (i.e. not aligned to a matrix) are
|
||
substituted by matching images.")
|
||
(license license:gpl2))))
|
||
|
||
(define-public scantailor-advanced
|
||
(let ((commit "3d1e74e6ace413733511086934a66f4e3f7a6027"))
|
||
(package
|
||
(name "scantailor-advanced")
|
||
(version (string-append "1.0.16-" (string-take commit 7)))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/4lex4/scantailor-advanced")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0kixwjb2x457dq7927hkh34c803p7yh1pmn6n61rk9shqrcg492h"))))
|
||
(build-system qt-build-system)
|
||
(native-inputs
|
||
(list qttools-5))
|
||
(inputs
|
||
`(("boost" ,boost)
|
||
("libjpeg" ,libjpeg-turbo)
|
||
("libpng" ,libpng)
|
||
("libtiff" ,libtiff)
|
||
("qtbase" ,qtbase-5)
|
||
("qtsvg-5" ,qtsvg-5)
|
||
("zlib" ,zlib)))
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
;; Some tests require a display and fail with offscreen mode.
|
||
(add-after 'unpack 'disable-failing-tests
|
||
(lambda _
|
||
(setenv "ARGS" "--exclude-regex \"imageproc_.*\"")
|
||
#t)))))
|
||
(home-page "https://github.com/4lex4/scantailor-advanced")
|
||
(synopsis "Clean up scanned pages")
|
||
(description "Scan Tailor is an interactive post-processing tool for
|
||
scanned pages. It performs operations such as page splitting, deskewing,
|
||
adding/removing borders, and others. You give it raw scans, and you get pages
|
||
ready to be printed or assembled into a PDF or DJVU file. Scanning, optical
|
||
character recognition, and assembling multi-page documents are out of scope of
|
||
this project.
|
||
|
||
Scan Tailer Advanced is a fork of Scan Tailer that merges Scan Tailor Featured
|
||
and Scan Tailor Enhanced versions as well as including many more bug fixes.")
|
||
(license license:gpl3+))))
|
||
|
||
(define-public stiff
|
||
(package
|
||
(name "stiff")
|
||
(version "2.4.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/stiff/stiff-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "14m92dskzw7bwsr64ha4p0mj3ndv13gwcbfic3qxrs3zq5353s7l"))))
|
||
(build-system gnu-build-system)
|
||
(inputs
|
||
(list libtiff zlib libjpeg-turbo))
|
||
(home-page "https://www.astromatic.net/software/stiff")
|
||
(synopsis "Convert scientific FITS images to TIFF format")
|
||
(description
|
||
"STIFF is a program that converts scientific @acronym{FITS, Flexible Image
|
||
Transport System} images to the more popular TIFF format for illustration
|
||
purposes.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public python-imgviz
|
||
(package
|
||
(name "python-imgviz")
|
||
(version "1.2.6")
|
||
(source
|
||
(origin
|
||
;; PyPi tarball lacks tests.
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/wkentaro/imgviz.git")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1bm0wdv5p26i8nl4kx3145cz553v401sgbpgc96sddzjfmfiydcw"))
|
||
(snippet
|
||
#~(begin (use-modules (guix build utils))
|
||
(substitute* "imgviz/draw.py"
|
||
(("collections\\.Iterable") "collections.abc.Iterable"))
|
||
(substitute* "imgviz/tile.py"
|
||
(("collections\\.Sequence") "collections.abc.Sequence"))))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(invoke "pytest" "-v" "tests"))
|
||
#t)))))
|
||
(propagated-inputs
|
||
(list python-matplotlib python-numpy python-pillow python-pyyaml))
|
||
(native-inputs (list python-pytest))
|
||
(home-page "http://github.com/wkentaro/imgviz")
|
||
(synopsis "Image Visualization Tools")
|
||
(description "Python library for object detection, semantic and instance
|
||
segmentation.")
|
||
(license license:expat)))
|
||
|
||
(define-public labelme
|
||
(package
|
||
(name "labelme")
|
||
(version "4.5.13")
|
||
(source
|
||
(origin
|
||
;; PyPi tarball lacks tests.
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/wkentaro/labelme.git")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0cmi2xb4dgh7738l259rgwhn9l134f0vnaaqc2gflc5yr3lqhrv2"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'loosen-requirements
|
||
(lambda _
|
||
;; Don't require an outdated version of matplotlib.
|
||
(substitute* "setup.py"
|
||
(("matplotlib<3\\.3")
|
||
"matplotlib"))))
|
||
(add-before 'check 'start-xserver
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(let ((xorg-server (assoc-ref inputs "xorg-server")))
|
||
;; Options taken from CI workflow.
|
||
(system (string-append xorg-server "/bin/Xvfb :99 -screen 0 "
|
||
"1920x1200x24 -ac +extension GLX +render "
|
||
"-noreset &"))
|
||
(setenv "DISPLAY" ":99.0"))))
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
;; Fails when invoking help2man for unknown reason.
|
||
(delete-file "tests/docs_tests/man_tests/test_labelme_1.py")
|
||
;; One test hangs.
|
||
(delete-file "tests/labelme_tests/widgets_tests/test_label_dialog.py")
|
||
;; Calls incompatible function signatures.
|
||
(delete-file "tests/labelme_tests/widgets_tests/test_label_list_widget.py")
|
||
(setenv "MPLBACKEND" "agg")
|
||
(invoke "pytest" "-v" "tests" "-m" "not gpu")))))))
|
||
(propagated-inputs
|
||
(list python-imgviz
|
||
python-matplotlib
|
||
python-numpy
|
||
python-pillow
|
||
python-pyyaml
|
||
python-qtpy
|
||
python-termcolor))
|
||
(native-inputs
|
||
(list python-pytest python-pytest-qt xorg-server-for-tests))
|
||
(home-page "https://github.com/wkentaro/labelme")
|
||
(synopsis
|
||
"Image Polygonal Annotation")
|
||
(description
|
||
"Image and video labeling tool supporting different shapes like
|
||
polygons, rectangles, circles, lines, points and VOC/COCO export.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public charls
|
||
(package
|
||
(name "charls")
|
||
(version "2.3.4")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/team-charls/charls/")
|
||
(commit (string-append version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0g3f1rfimk30rqmi7ic4i5vfphyqbbpsyyhwqq1iss9wjwaz2vs5"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:configure-flags '("-DCMAKE_BUILD_TYPE:STRING=Release"
|
||
"-DBUILD_SHARED_LIBS=On")))
|
||
(native-inputs (list git pkg-config))
|
||
(home-page "https://github.com/team-charls/charls")
|
||
(synopsis "Library for using JPEG-LS compliant images")
|
||
(description
|
||
"CharLS is a codec library that can be used to build applications that
|
||
can handle JPEG-LS compliant images. In the application you are writing you
|
||
can call the CharLS codec and pass it images (sometimes called raster bitmaps),
|
||
to have them encoded to JPEG-LS, or JPEG-LS streams, which CharLS will decode
|
||
to images.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public libansilove
|
||
(package
|
||
(name "libansilove")
|
||
(version "1.4.1")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/ansilove/libansilove")
|
||
(commit (string-append version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"169njlck4a2bmf1kmjas1w594hyda543ykdnwg7fwkviij39l9z6"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list #:tests? #f)) ; No tests included
|
||
(native-inputs
|
||
(list gd))
|
||
(home-page "https://www.ansilove.org/")
|
||
(synopsis "Library for converting ANSI, ASCII, and other formats to PNG")
|
||
(description
|
||
"libansilove is a library for converting artscene file types to PNG images,
|
||
including ANSI (.ANS) and many others. The library primarily serves to support
|
||
the ansilove tool.")
|
||
(license license:bsd-2)))
|
||
|
||
(define-public ansilove
|
||
(package
|
||
(name "ansilove")
|
||
(version "4.2.0")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/ansilove/ansilove")
|
||
(commit (string-append version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1h9r759krjl8wi68yxs1d46qfrx6v89a8vmmv3aqym8vn9x430kh"))))
|
||
(build-system cmake-build-system)
|
||
(native-inputs
|
||
(list libansilove))
|
||
(home-page "https://www.ansilove.org/")
|
||
(synopsis "ANSI and ASCII art to PNG converter")
|
||
(description
|
||
"AnsiLove is an ANSI and ASCII art to PNG converter, allowing to convert
|
||
ANSI and artscene-related file formats into PNG images, supporting ANSI (.ANS),
|
||
PCBoard (.PCB), Binary (.BIN), Artworx (.ADF), iCE Draw (.IDF), Tundra (.TND)
|
||
and XBin (.XB) formats.")
|
||
(license license:bsd-2)))
|