guix/gnu/packages
Ricardo Wurmus 84047fe00d
gnu: r-bionet: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.64.0.

Change-Id: I3a66573dfe5b4a2758bea8e7af6a05b22a14b218
2024-05-08 12:53:40 +02:00
..
aux-files gnu: Remove linux-libre 6.7. 2024-04-30 17:50:21 -04:00
patches gnu: grantlee: Fix build on some architectures. 2024-05-07 00:43:24 +03:00
abduco.scm
abiword.scm
accessibility.scm gnu: mouseloupe: Update the package style. 2024-05-06 23:16:55 +03:00
acct.scm
acl.scm
ada.scm
admin.scm gnu: jc: Update to 1.25.2. 2024-05-01 09:24:57 +03:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: ntl: Correct license. 2024-04-29 16:37:51 +02:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apparmor.scm
apple.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: Add psfex. 2024-04-30 21:36:14 +01:00
attr.scm
audio.scm gnu: darkice: Fix build. 2024-05-06 23:16:46 +03:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr-xyz.scm
avr.scm
axoloti.scm
backup.scm
barrier.scm
base.scm
bash.scm gnu: bats: Update to 1.11.0. 2024-05-01 10:05:42 +03:00
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-bionet: Update to 1.64.0. 2024-05-08 12:53:40 +02:00
bioinformatics.scm gnu: bitmapperbs: Limit to x86_64-linux. 2024-05-07 01:31:20 +03:00
bison.scm
bittorrent.scm
books.scm
boost.scm
bootloaders.scm
bootstrap.scm
bqn.scm
browser-extensions.scm
build-tools.scm
busybox.scm
c.scm gnu: tomlc99: Install pkg-config file. 2024-04-30 17:58:35 +01:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
cedille.scm
certs.scm gnu: nss-certs: Update to 3.99. 2024-04-28 10:01:29 -04:00
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm
cinnamon.scm
clifm.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm
containers.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: psascan: Limit to 64-bit systems. 2024-05-07 01:44:28 +03:00
cppi.scm
cran.scm gnu: Add r-jsonvalidate. 2024-05-08 12:53:14 +02:00
crates-apple.scm
crates-crypto.scm
crates-graphics.scm
crates-gtk.scm
crates-io.scm gnu: Add rust-amd-0.2. 2024-05-05 22:38:15 +02:00
crates-tls.scm
crates-vcs.scm
crates-web.scm
crates-windows.scm
cross-base.scm
cross-toolchain.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
darwin.scm
data-language.scm
databases.scm gnu: sqls: Use go-1.21. 2024-05-07 21:33:44 +01:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dezyne.scm gnu: dezyne: Update to 2.18.2. 2024-05-02 13:15:03 +02:00
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm
dns.scm
docbook.scm
docker.scm
documentation.scm
dvtm.scm
easyrpg.scm
ebook.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir-xyz.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: Add emacs-devicetree-ts-mode. 2024-05-06 14:14:31 +02:00
emacs.scm
embedded.scm
emulators.scm gnu: retroarch: Fix OpenGL core and Vulkan drivers. 2024-05-06 13:46:26 +02:00
enchant.scm
engineering.scm
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm gnu: tmsu: Enable test suite. 2024-05-07 21:33:44 +01:00
file.scm
finance.scm gnu: bitcoin-core: Update to 27.0. 2024-04-26 15:55:21 +01:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm
fontutils.scm gnu: python-statmake: Adjust tests and version checks. 2024-05-05 22:38:18 +02:00
forth.scm
fpga.scm
freedesktop.scm gnu: Add libdecor. 2024-04-29 23:58:11 +02:00
freeipmi.scm
fribidi.scm
fsf.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm gnu: zsnes: Relocate to (gnu packages emulator). 2024-05-05 14:03:17 -04:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm gnu: python-verde: Add missing input. 2024-05-05 22:38:18 +02:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm
gnome-xyz.scm
gnome.scm gnu: gnome-js-common: Fix build on some architectures. 2024-05-06 23:16:51 +03:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gnucash: Update to 5.6. 2024-05-04 19:14:27 +02:00
gnunet.scm
gnupg.scm
gnustep.scm gnu: wmfire: Fix build. 2024-05-06 23:16:46 +03:00
gnuzilla.scm gnu: firefox-decrypt: Update to 1.1.1. 2024-05-01 10:39:25 +03:00
gobby.scm
golang-build.scm
golang-check.scm
golang-compression.scm
golang-crypto.scm gnu: Add go-github-com-golang-jwt-jwt. 2024-05-07 15:38:25 +01:00
golang-web.scm gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web. 2024-05-07 23:18:47 +01:00
golang-xyz.scm gnu: Add go-bazil-org-fuse. 2024-05-07 23:18:48 +01:00
golang.scm gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz. 2024-05-07 23:18:48 +01:00
gperf.scm
gpodder.scm
gps.scm
graph.scm gnu: python-graphtools: Fix tests. 2024-05-05 22:38:18 +02:00
graphics.scm
graphviz.scm gnu: xdot: Update to 1.3. 2024-05-01 22:24:49 +02:00
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm gnu: libvisual-plugins: Reformat with 'guix style'. 2024-05-06 23:16:48 +03:00
gtk.scm gnu: graphene: Fix build on armhf-linux. 2024-05-06 23:16:31 +03:00
guile-wm.scm
guile-xyz.scm gnu: guile-jwt: Update to 0.3.0. 2024-05-06 21:56:59 +02:00
guile.scm gnu: guile-git: Update to 0.7.0. 2024-05-01 17:26:18 +02:00
gv.scm
gxmessage.scm
hardware.scm gnu: hw-probe: Use edid-decode. 2024-04-30 17:58:35 +01:00
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
haxe.scm gnu: hashlink: Update to 1.14 2024-04-28 10:11:25 -04:00
heads.scm
hexedit.scm
high-availability.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
instrumentation.scm gnu: barectf: Use python-termcolor-1. 2024-05-05 22:38:17 +02:00
ipfs.scm gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util. 2024-05-08 00:07:21 +01:00
irc.scm gnu: Add soju. 2024-05-07 21:33:44 +01:00
irods.scm
iso-codes.scm
jami.scm
java-bootstrap.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java-rdf.scm
java-xml.scm
java.scm gnu: jbr: Update to 17.0.10b1207.6. 2024-04-25 23:14:03 +02:00
javascript.scm
jemalloc.scm
jose.scm
julia-jll.scm
julia-xyz.scm
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm gnu: Add phonon-backend-vlc. 2024-05-01 00:21:37 +08:00
kde-games.scm
kde-internet.scm
kde-multimedia.scm gnu: elisa: Update to 23.08.5. 2024-05-06 23:16:49 +03:00
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm gnu: Add kwalletmanager. 2024-04-30 22:55:18 +08:00
kde-utils.scm
kde.scm
kerberos.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm gnu: leocad: Update to 23.03 2024-05-06 13:26:16 +02:00
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
librewolf.scm gnu: librewolf: Update to 125.0.2-1. 2024-04-28 10:01:29 -04:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre 4.19: Update to 4.19.313. 2024-05-05 23:15:59 -04:00
lirc.scm
lisp-check.scm
lisp-xyz.scm
lisp.scm
llvm-meta.scm
llvm.scm
logging.scm
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: python-scikit-learn-extra: Disable a validation test. 2024-05-05 22:38:18 +02:00
magic-wormhole.scm
mail.scm gnu: msmtp: Update to 1.8.26. 2024-05-06 13:24:42 +02:00
make-bootstrap.scm linux-initrd: Further strip the static Guile. 2024-04-29 22:52:08 +02:00
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: wxmaxima: Update to 24.02.2. 2024-05-06 13:47:25 +02:00
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm
microcom.scm
minetest.scm
mingw.scm
moe.scm
mold.scm
monitoring.scm
moreutils.scm gnu: moreutils: Update to 0.69. 2024-04-26 16:45:03 +01:00
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: wolf-shaper: Add tunable property. 2024-05-06 23:16:54 +03:00
musl.scm
myrddin.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: bird: Update to 2.15.1. 2024-05-01 06:48:55 +03:00
nfs.scm
nickle.scm gnu: nickle: Update to 2.97. 2024-04-30 22:03:39 -05:00
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
notcurses.scm
noweb.scm
nss.scm gnu: nss/fixed: Update to 3.99. 2024-04-28 10:01:29 -04:00
ntp.scm
nutrition.scm
nvi.scm
nx.scm
ocaml.scm gnu: haxe: Update to 4.3.4 2024-04-28 10:11:25 -04:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: nar-herder: Update to 0-30.71115bd. 2024-04-30 17:58:34 +01:00
pantheon.scm
parallel.scm gnu: parallel: Update to 20240422. 2024-04-26 16:54:24 +01:00
pascal.scm
password-utils.scm
patchutils.scm
patool.scm
pciutils.scm Revert "gnu: hwdata: Update to 0.378." 2024-05-06 14:29:25 +02:00
pcre.scm
pdf.scm gnu: zathura-pdf-mupdf: Update to 0.4.1. 2024-04-26 16:52:54 +01:00
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm gnu: Add perl-spreadsheet-xlsx. 2024-05-04 19:14:26 +02:00
perl6.scm
phabricator.scm
photo.scm
php-xyz.scm
php.scm gnu: php: Update to 8.3.6. 2024-04-26 16:48:58 +01:00
piet.scm
pikchr.scm
pkg-config.scm
plan9.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
potassco.scm
presentation.scm
pretty-print.scm gnu: highlight: Update to 4.11. 2024-05-06 13:44:24 +02:00
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
pypy.scm
python-build.scm
python-check.scm gnu: python-pytest-shutil: Disable a test. 2024-05-05 22:38:17 +02:00
python-compression.scm
python-crypto.scm
python-science.scm gnu: python-gpy: Update to 1.13.1. 2024-05-05 22:38:18 +02:00
python-web.scm gnu: python-http-client: Fix test suite. 2024-05-06 23:16:56 +03:00
python-xyz.scm gnu: Add python-archspec. 2024-05-06 10:37:41 +02:00
python.scm gnu: python-3.12: Enable loadable sqlite extensions. 2024-04-26 08:12:06 +02:00
qt.scm gnu: grantlee: Fix build on some architectures. 2024-05-07 00:43:24 +03:00
quantum.scm
racket.scm
radio.scm
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm gnu: freerdp: Update to 2.11.7. 2024-04-26 16:53:48 +01:00
rdf.scm
re2c.scm
readline.scm
rednotebook.scm gnu: rednotebook: Correctly wrap the binary. 2024-05-06 23:16:48 +03:00
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm
ruby.scm
rush.scm
rust-apps.scm
rust.scm
sagemath.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm
security-token.scm Revert "gnu: pcsc-lite: Update to 2.1.0." 2024-05-06 19:01:38 +02:00
selinux.scm
sequoia.scm
serialization.scm
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
solidity.scm gnu: solidity: Update to 0.8.25. 2024-05-06 23:16:53 +03:00
sourcehut.scm
specifications.scm
speech.scm
sphinx.scm
spice.scm
spreadsheet.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
statistics.scm gnu: r-desctools: Set HOME variable. 2024-05-08 12:53:14 +02:00
stb.scm
stenography.scm
storage.scm
suckless.scm
sugar.scm
swig.scm
sycl.scm
sync.scm
syncthing.scm gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to 2.0.0. 2024-05-07 21:33:44 +01:00
syndication.scm
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm
terminals.scm
terraform.scm
tex.scm
texinfo.scm
texlive.scm
text-editors.scm
textutils.scm
time.scm
tls.scm gnu: guile-gnutls: Update to 4.0.0. 2024-04-30 17:58:35 +01:00
tmux.scm
toolkits.scm
tor-browsers.scm gnu: make-torbrowser: Fix file picker. 2024-04-29 14:07:06 +02:00
tor.scm
toys.scm
tree-sitter.scm gnu: Add tree-sitter-devicetree. 2024-05-06 14:14:03 +02:00
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: gource: Update to 0.54. 2024-05-01 09:11:05 +03:00
video.scm gnu: theorafile: Fix cross-compiling. 2024-05-06 23:16:50 +03:00
vim.scm
virtualization.scm
vlang.scm
vnc.scm
vpn.scm gnu: strongswan: Remove pre-generated files. 2024-05-06 23:16:52 +03:00
vulkan.scm gnu: spirv-llvm-translator: Update to 18.1.0. 2024-05-01 15:29:53 -04:00
w3m.scm
wdiff.scm
weather.scm
web-browsers.scm gnu: qutebrowser: Add python-tldextract to inputs. 2024-05-06 13:45:30 +02:00
web.scm gnu: web: Remove syncthing module from used modules. 2024-05-07 23:17:46 +01:00
webkit.scm
wget.scm
wine.scm
wireservice.scm
wm.scm gnu: waybar: Update to 0.10.2. 2024-05-06 13:48:38 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm
xfce.scm gnu: thunar: Use glib-or-gtk-build-system. 2024-04-29 08:54:30 +08:00
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm
zig-xyz.scm
zig.scm
zile.scm
zwave.scm